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Biology

2019

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Full-Text Articles in Social and Behavioral Sciences

Early Child Development Amid The Pandemic, Zain Saeed Siddiqui Dec 2019

Early Child Development Amid The Pandemic, Zain Saeed Siddiqui

MSJ Capstone Projects

I would like to bring to notice the importance of early child development because the early years are crucial for the development especially the skills that are going to help children succeed in life. Basically, I would like to focus on the natural development of the human being from birth to maturity, enabling children to become the transforming elements of society, leading to a harmonious and peaceful world.

Emotional well-being and social competence provide a strong foundation for emerging cognitive abilities, and together they are the bricks and mortar that comprise the foundation of human development.

Generally, development happens in …


Undergraduates And Stress, Mahra Crone Dec 2019

Undergraduates And Stress, Mahra Crone

Honors Projects

America is facing a serious mental health crisis, which may be an effect of increased chronic stress. Students, in particular, are vulnerable to this hazard as most face a moderate to extreme amount of stress. The programs which colleges and universities have put into place are outdated. Ineffective treatment of mental health crises leads to disastrous consequences. The present study analyzed the effects of major and grade level on stress level and sources of stress for undergraduate universities at both a large, public university and a small, private college. The author found that a student’s grade level and choice of …


Biological And Psychological Implications Of Mindfulness Meditation For College Students, Kelsey Madison Dietrich Dec 2019

Biological And Psychological Implications Of Mindfulness Meditation For College Students, Kelsey Madison Dietrich

Honors Projects

The purpose of this capstone project was threefold: investigate the psychological implications of mindfulness meditation for college students enrolled in a semester-long course introducing these practices, investigate the biological implications of mindfulness meditation for these students, and create the Peer Education “Mindfulness” presentation for the Wellness Connection to introduce mindfulness meditation methods to a greater quantity of college students. The following paper describes the two components of this capstone project that examine the implications of mindfulness meditation opportunities available for college students specifically at Bowling Green State University in Bowling Green, Ohio.


Biology Of Sharks And Their Relatives Bio 422, Joanna Burkhardt Dec 2019

Biology Of Sharks And Their Relatives Bio 422, Joanna Burkhardt

Library Impact Statements

No abstract provided.


Trematodes And Neorickettsia: Diversity Of Digeneans And Their Bacterial Endosymbionts (Neorickettsia) In Mollusk First Intermediate Hosts From Eastern Mongolia, Morgan Gallahue Dec 2019

Trematodes And Neorickettsia: Diversity Of Digeneans And Their Bacterial Endosymbionts (Neorickettsia) In Mollusk First Intermediate Hosts From Eastern Mongolia, Morgan Gallahue

Honors College Theses

This study focused on the survey of 34 freshwater snail samples collected from NE Mongolia for larval flatworm parasites in the class Trematoda. 32 of the snail samples were infected, and the parasites were identified based on morphology and DNA sequences. Nine of the identified parasite samples were screened for the presence of bacterial endosymbionts in the genus Neorickettsia in the family Anaplasmataceae. All of the samples screened for Neorickettsia were negative for the bacterium. Species of Neorickettsia are known to cause several diseases such as Sennetsu Fever (in humans) and Potomac Horse Fever. There have been relatively few reliable …


Mammal Species Inventory Using Various Trapping Methods In Zone 4 Of Billy Barquedier National Park, Belize During Rainy Season, Mersady Redding Dec 2019

Mammal Species Inventory Using Various Trapping Methods In Zone 4 Of Billy Barquedier National Park, Belize During Rainy Season, Mersady Redding

Animal Science Undergraduate Honors Theses

Belize is a small country, but it is extremely ecologically diverse. Based on the few studies conducted in Belize, the abundance of mammals is low but diversity is high. Particular findings note the number and identity of species differed between four sites in the Maya Mountains of Belize, indicating that a data set from a single site is not representative of the Neotropical region. Insufficient data is available to estimate current species richness of many areas in Belize, including Billy Barquedier National Park (BBNP). The objective of this study was to explore trapping and documentation methods of terrestrial mammals in …


Characterizing Elasmobranch Species Diversity, Occurrence And Catches In Small-Scale Fisheries Of The Caribbean, Camila Cáceres Nov 2019

Characterizing Elasmobranch Species Diversity, Occurrence And Catches In Small-Scale Fisheries Of The Caribbean, Camila Cáceres

FIU Electronic Theses and Dissertations

Although 95% of fishers are artisanal, little is known about the magnitude of their catches and impacts on marine ecosystems at a global scale. I used a rapid assessment framework to study elasmobranch occurrence, elasmobranch fisheries, and use in coastal small-scale fisheries in the Caribbean, combining observational data and fisher’s knowledge. A total of 800 Baited Remote Underwater Videos were deployed in addition to 660 interview surveys that were collected in Colombia, Guadeloupe, Martinique, Tobago and the Florida Keys. In Colombia, I compared elasmobranch and teleost species richness and relative abundance within four coral reef habitats, where species targeted by …


Spatial And Temporal Variation Of Offshore Wind Power And Its Values Along The Central California Coast, Yi-Hui Wang, Ryan K. Walter, Crow White, Matthew D. Kehrli, Stephen F. Hamilton, Patrick H. Soper, Benjamin I. Ruttenberg Oct 2019

Spatial And Temporal Variation Of Offshore Wind Power And Its Values Along The Central California Coast, Yi-Hui Wang, Ryan K. Walter, Crow White, Matthew D. Kehrli, Stephen F. Hamilton, Patrick H. Soper, Benjamin I. Ruttenberg

Physics

The analysis of the spatiotemporal variability of wind power remains limited during the planning stage of an offshore wind farm. This study provides a framework to investigate how offshore wind power varies along the Central California Coast over diurnal and seasonal time scales, which is critical for reliability and functionality of the grid system. We find that offshore wind power in this region peaks during evening hours across all seasons and maximizes in spring and summer. The timing of peak offshore wind power production better aligns with that of peak demand across California than solar and land-based wind power production, …


Undergraduate Research Science: Principles And Practice Bio 200, Michael Cerbo Oct 2019

Undergraduate Research Science: Principles And Practice Bio 200, Michael Cerbo

Library Impact Statements

No abstract provided.


Amendments To The 1995 Offshore Constitutional Settlement, Department Of Fisheries Oct 2019

Amendments To The 1995 Offshore Constitutional Settlement, Department Of Fisheries

Fisheries management papers

No abstract provided.


Where To Forage When Afraid: Does Perceived Risk Impair Use Of The Foodscape?, Samantha P.H. Dwinnell, Hall Sawyer, Jill E. Randall, Jeffery L. Beck, Jennifer S. Forbey, Gary L. Fralick, Kevin L. Monteith Oct 2019

Where To Forage When Afraid: Does Perceived Risk Impair Use Of The Foodscape?, Samantha P.H. Dwinnell, Hall Sawyer, Jill E. Randall, Jeffery L. Beck, Jennifer S. Forbey, Gary L. Fralick, Kevin L. Monteith

Biology Faculty Publications and Presentations

The availability and quality of forage on the landscape constitute the foodscape within which animals make behavioral decisions to acquire food. Novel changes to the foodscape, such as human disturbance, can alter behavioral decisions that favor avoidance of perceived risk over food acquisition. Although behavioral changes and population declines often coincide with the introduction of human disturbance, the link(s) between behavior and population trajectory are difficult to elucidate. To identify a pathway by which human disturbance may affect ungulate populations, we tested the Behaviorally Mediated Forage‐Loss Hypothesis, wherein behavioral avoidance is predicted to reduce use of available forage adjacent to …


Leopards Are Good To Think With: Spotting The Zanzibar Leopard In Jozani Forest, Andrew Weier Oct 2019

Leopards Are Good To Think With: Spotting The Zanzibar Leopard In Jozani Forest, Andrew Weier

Independent Study Project (ISP) Collection

In this project, the modern narrative of the Zanzibar leopard was studied in Jozani-Chwaka Bay National Park. Game cameras were installed and various locations around the national park to try and gather primary evidence that supported the existence of a leopard population in the forest. In addition, local community members were interviewed about recent leopard related activities. No biological evidence was gathered that supported the existence of the Zanzibar leopard and information collected from interviews indicated a potential shift in which other organisms are considered leopards. Recommendations were made for future research to be able to better understand the complex …


Why We Can’T Solve The Opioid Problem, Wayne F. Coombs, Ph.D. Sep 2019

Why We Can’T Solve The Opioid Problem, Wayne F. Coombs, Ph.D.

Journal of Appalachian Health

Appalachia’s opioid epidemic is a complex, systemic problem being addressed by limited intervention processes conceptualized through narrow disciplinary models that are not working. We need a new comprehensive, collaborative approach if we ever hope to find solutions to this problem.


Biology Of Human Health And Disease Bio 482g, Michael Cerbo Sep 2019

Biology Of Human Health And Disease Bio 482g, Michael Cerbo

Library Impact Statements

No abstract provided.


What Do Agricultural And Biological Science Students Use? A Bibliometric Analysis Of Undergraduate Research Projects, Jerome Idiegbeyan-Ose, Ayooluwa Aregbesola, Sols Owolabi, Toluwani Eyiolorunshe, Ayotunde Owolabi Sep 2019

What Do Agricultural And Biological Science Students Use? A Bibliometric Analysis Of Undergraduate Research Projects, Jerome Idiegbeyan-Ose, Ayooluwa Aregbesola, Sols Owolabi, Toluwani Eyiolorunshe, Ayotunde Owolabi

Library Philosophy and Practice (e-journal)

The study investigate the citation pattern of undergraduate projects in a private university, Nigeria. Bibliometric method was adopted for the study to analyze the information sources cited in the research projects. The coverage of the study was from 2015 to 2018 set of graduates. Findings revealed that Animal Science programme accounted for the highest citations, while Agricultural Economics had the lowest citations. It was also discovered that an average of 49 citations per project were recorded. Journal articles and books were the most cited materials. The paper concluded and made recommendations.


Biology Of Medicine Bio 481x, Michael Cerbo Sep 2019

Biology Of Medicine Bio 481x, Michael Cerbo

Library Impact Statements

No abstract provided.


"The Dead Shall Be Raised": Multidisciplinary Analysis Of Human Skeletons Reveals Complexity In 19th Century Immigrant Socioeconomic History And Identity In New Haven, Connecticut, Gary P. Aronsen, Lars Fehren-Schmitz, John Krigbaum, George D. Kamenov, Gerald J. Conlogue, Christina Warinner, Andrew T. Ozga, Krithivasan Sankaranarayanan, Anthony Griego, Daniel W. Deluca, Howard T. Eckels, Romuald K. Byczkiewicz, Tania Grgurich, Natalie A. Pelletier, Sarah A. Brownlee, Ana Marichal, Kylie Williamson, Yukiko Tonoike, Nicholas F. Bellantoni Sep 2019

"The Dead Shall Be Raised": Multidisciplinary Analysis Of Human Skeletons Reveals Complexity In 19th Century Immigrant Socioeconomic History And Identity In New Haven, Connecticut, Gary P. Aronsen, Lars Fehren-Schmitz, John Krigbaum, George D. Kamenov, Gerald J. Conlogue, Christina Warinner, Andrew T. Ozga, Krithivasan Sankaranarayanan, Anthony Griego, Daniel W. Deluca, Howard T. Eckels, Romuald K. Byczkiewicz, Tania Grgurich, Natalie A. Pelletier, Sarah A. Brownlee, Ana Marichal, Kylie Williamson, Yukiko Tonoike, Nicholas F. Bellantoni

Biology Faculty Articles

In July 2011, renovations to Yale-New Haven Hospital inadvertently exposed the cemetery of Christ Church, New Haven, Connecticut’s first Catholic cemetery. While this cemetery was active between 1833 and 1851, both the church and its cemetery disappeared from public records, making the discovery serendipitous. Four relatively well-preserved adult skeletons were recovered with few artifacts. All four individuals show indicators of manual labor, health and disease stressors, and dental health issues. Two show indicators of trauma, with the possibility of judicial hanging in one individual. Musculoskeletal markings are consistent with physical stress, and two individuals have arthritic indicators of repetitive movement/specialized …


Successful Enrichment And Recovery Of Whole Mitochondrial Genomes From Ancient Human Dental Calculus, Andrew T. Ozga, Maria A. Nieves-Colon, Tanvi P. Honap, Krithivasan Sankaranarayanan, Courtney A. Hofman, George R. Milner, Cecil M. Lewis Jr., Anne C. Stone, Christina Warinner Aug 2019

Successful Enrichment And Recovery Of Whole Mitochondrial Genomes From Ancient Human Dental Calculus, Andrew T. Ozga, Maria A. Nieves-Colon, Tanvi P. Honap, Krithivasan Sankaranarayanan, Courtney A. Hofman, George R. Milner, Cecil M. Lewis Jr., Anne C. Stone, Christina Warinner

Andrew Ozga

Objectives

Archaeological dental calculus is a rich source of host‐associated biomolecules. Importantly, however, dental calculus is more accurately described as a calcified microbial biofilm than a host tissue. As such, concerns regarding destructive analysis of human remains may not apply as strongly to dental calculus, opening the possibility of obtaining human health and ancestry information from dental calculus in cases where destructive analysis of conventional skeletal remains is not permitted. Here we investigate the preservation of human mitochondrial DNA (mtDNA) in archaeological dental calculus and its potential for full mitochondrial genome (mitogenome) reconstruction in maternal lineage ancestry analysis.

Materials and …


Origins Of An Unmarked Georgia Cemetery Using Ancient Dna Analysis, Andrew T. Ozga, Raul Y. Tito, Brian M. Kemp, Hugh Matternes, Alexandra J. Obregon-Tito, Leslie Neal, Cecil M. Lewis Jr. Aug 2019

Origins Of An Unmarked Georgia Cemetery Using Ancient Dna Analysis, Andrew T. Ozga, Raul Y. Tito, Brian M. Kemp, Hugh Matternes, Alexandra J. Obregon-Tito, Leslie Neal, Cecil M. Lewis Jr.

Andrew Ozga

Determining the origins of those buried within undocumented cemeteries is of incredible importance to historical archaeologists and, in many cases, the nearby communities. In the case of Avondale Burial Place, a cemetery in Bibb County, Georgia, in use from 1820 to 1950, all written documentation of those interred within it has been lost. Osteological and archaeological evidence alone could not describe, with confidence, the ancestral origins of the 101 individuals buried there. In the present study, we used ancient DNA extraction methods in well-preserved skeletal fragments from 20 individuals buried in Avondale Burial Place to investigate the origins of the …


Comparison Of Two Ancient Dna Extraction Protocols For Skeletal Remains From Tropical Environments, Maria A. Nieves-Colon, Andrew T. Ozga, William J. Pestle, Andrea Cucina, Vera Tiesler, Travis W. Stanton, Anne C. Stone Aug 2019

Comparison Of Two Ancient Dna Extraction Protocols For Skeletal Remains From Tropical Environments, Maria A. Nieves-Colon, Andrew T. Ozga, William J. Pestle, Andrea Cucina, Vera Tiesler, Travis W. Stanton, Anne C. Stone

Andrew Ozga

Objectives

The tropics harbor a large part of the world's biodiversity and have a long history of human habitation. However, paleogenomics research in these climates has been constrained so far by poor ancient DNA yields. Here we compare the performance of two DNA extraction methods on ancient samples of teeth and petrous portions excavated from tropical and semi‐tropical sites in Tanzania, Mexico, and Puerto Rico (N = 12).

Materials and Methods

All samples were extracted twice, built into double‐stranded sequencing libraries, and shotgun sequenced on the Illumina HiSeq 2500. The first extraction protocol, Method D, was previously designed for …


Differential Preservation Of Endogenous Human And Microbial Dna In Dental Calculus And Dentin, Allison E. Mann, Susanna Sabin, Kirsten Ziesemer, Ashild J. Vagene, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar-Garcia, Bruno Frohlich, Mark Aldenderfer, Menno Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis Jr., Johannes Krause, Corinne Hofman, Kirsten I. Bos, Christina Warinner Aug 2019

Differential Preservation Of Endogenous Human And Microbial Dna In Dental Calculus And Dentin, Allison E. Mann, Susanna Sabin, Kirsten Ziesemer, Ashild J. Vagene, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar-Garcia, Bruno Frohlich, Mark Aldenderfer, Menno Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis Jr., Johannes Krause, Corinne Hofman, Kirsten I. Bos, Christina Warinner

Andrew Ozga

Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections and is a rich source of oral microbiome and host-derived ancient biomolecules. Recently, it has been proposed that dental calculus may provide a more robust environment for DNA preservation than other skeletal remains, but this has not been systematically tested. In this study, shotgun-sequenced data from paired dental calculus and dentin samples from 48 globally distributed individuals are compared using a metagenomic approach. Overall, we find DNA from dental calculus is consistently more abundant and less contaminated than DNA from dentin. The majority of DNA in dental calculus is …


Nature And Nurture: How Our Genes And Environments Shape Our Lives Bio 440g, Michael Cerbo Aug 2019

Nature And Nurture: How Our Genes And Environments Shape Our Lives Bio 440g, Michael Cerbo

Library Impact Statements

No abstract provided.


Methodological Advances For Understanding Social Connectivity And Environmental Implications In Multi-Use Landscapes, Matthew Clark Aug 2019

Methodological Advances For Understanding Social Connectivity And Environmental Implications In Multi-Use Landscapes, Matthew Clark

Boise State University Theses and Dissertations

Integrated social-ecological systems research is challenging; complicated feedback and interactions across scales in multi-use landscapes are difficult to decouple. Novel methods and innovative data sources are needed to advance social-ecological systems research. In this thesis, we use network science as a means of explicitly assessing feedback between social and ecological systems, and internet search data to better predict visitation in protected areas. This thesis seeks to provide empirical examples of emerging social-ecological systems science methods as a precedent for resource managers on-the-ground, as well as extending the line of scientific inquiry on the subject

In the first chapter of this …


Correcting Forensic Dna Errors, Greg Hampikian Jul 2019

Correcting Forensic Dna Errors, Greg Hampikian

Biology Faculty Publications and Presentations

DNA mixture interpretation can produce opposing conclusions by qualified forensic analysts, even within the same laboratory. The long-delayed publication of the National Institutes of Standards and Technology (NIST) study of 109 North American crime laboratories in this journal demonstrates this most clearly. This latest study supports earlier work that shows common methods such as the Combined Probability of Inclusion (CPI) have wrongly included innocent people as contributors to DNA mixtures.The 2016 President’s Council of Advisors on Science and Technology report concluded,“In summary, the interpretation of complex DNA mixtures with the CPI statistic has been an inadequately specified—and thus inappropriately subjective—method. …


Coral Reef Change Detection In Remote Pacific Islands Using Support Vector Machine Classifiers, Justin J. Gapper, Hesham El-Askary, Erik Linstead, Thomas Piechota Jun 2019

Coral Reef Change Detection In Remote Pacific Islands Using Support Vector Machine Classifiers, Justin J. Gapper, Hesham El-Askary, Erik Linstead, Thomas Piechota

Mathematics, Physics, and Computer Science Faculty Articles and Research

Despite the abundance of research on coral reef change detection, few studies have been conducted to assess the spatial generalization principles of a live coral cover classifier trained using remote sensing data from multiple locations. The aim of this study is to develop a machine learning classifier for coral dominated benthic cover-type class (CDBCTC) based on ground truth observations and Landsat images, evaluate the performance of this classifier when tested against new data, then deploy the classifier to perform CDBCTC change analysis of multiple locations. The proposed framework includes image calibration, support vector machine (SVM) training and tuning, statistical assessment …


Sex-Specific Personalities In The Purple Marsh Crab, Jillian Sterman, Jessica Barton, Panagiota Delmedico, Samantha Sweeney Jun 2019

Sex-Specific Personalities In The Purple Marsh Crab, Jillian Sterman, Jessica Barton, Panagiota Delmedico, Samantha Sweeney

DePaul Discoveries

Animals are considered to possess personalities when individuals differ in behavior, and these differences are consistent between situations. Several studies have identified personalities in diverse groups but less is known about personality variation between the sexes. In this study, we examined variation in two key personality traits (boldness, activity) in female and male purple marsh crabs (Sesarma reticulatum) using a semi-field approach. Specifically, we measured boldness and activity on two consecutive days using the same behavioral assays during each time point. Consistency (personality) was determined using Kendall’s coefficient of concordance based on Spearman correlation coefficients for each behavior. …


Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine Jun 2019

Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine

Faculty Journal Articles

A bush tomato that has evaded classification by solanologists for decades has been identified and is described as a new species belonging to the Australian “Solanum dioicum group” of the Ord Victoria Plain biogeographic region in the monsoon tropics of the Northern Territory. Although now recognised to be andromonoecious, S. plastisexum Martine & McDonnell, sp. nov. exhibits multiple reproductive phenotypes, with solitary perfect flowers, a few staminate flowers or with cymes composed of a basal hermaphrodite and an extended rachis of several to many staminate flowers. When in fruit, the distal rachis may abcise and drop. A member of …


Opportunities For Self-Evaluation Increase Student Calibration In An Introductory Biology Course, Jennifer L. Osterhage, Ellen Usher, Trisha A. Douin, William M. Bailey Jun 2019

Opportunities For Self-Evaluation Increase Student Calibration In An Introductory Biology Course, Jennifer L. Osterhage, Ellen Usher, Trisha A. Douin, William M. Bailey

Biology Faculty Publications

Accurate self-evaluation is critical for learning. Calibration describes the relationship between learners’ perception of their performance and their actual performance on a task. Here, we describe two studies aimed at assessing and improving student calibration in a first-semester introductory biology course at a 4-year public institution. Study 1 investigated students’ (n = 310) calibration (the difference between estimated and actual exam performance) across one semester. Students were significantly miscalibrated for the first exam: their predicted scores were, on average, significantly higher than their actual scores. The lowest-performing students had the most inaccurate estimates. Calibration improved with each exam. By …


The Potential Of Socio-Biologically Relevant Mobile Applications To Attract Girls To Stem, Vanaja Nethi, Santanu De May 2019

The Potential Of Socio-Biologically Relevant Mobile Applications To Attract Girls To Stem, Vanaja Nethi, Santanu De

FDLA Journal

Stimulating girls’ interest in science, technology, engineering and mathematics (STEM) when they are in school, and sustaining that interest, is critical in motivating girls to choose STEM-related disciplines in higher education and enter STEM careers. Research indicates that girls show an interest in STEM until about 11-12 years of age, but this starts to wane by the time they are 15-16 years. Thus, there is a clear need to focus on sustaining the interest of girls in STEM at middle or high school levels. Research has shown that one of the main drivers that impact girls’ interest in STEM is …


Territorial Behavior Of The Ozark Zigzag Salamander, Plethodon Angusticlavius, Altered By Mode Of Predator Cue And Sex Of Intruder, Sarah E. Heimbach May 2019

Territorial Behavior Of The Ozark Zigzag Salamander, Plethodon Angusticlavius, Altered By Mode Of Predator Cue And Sex Of Intruder, Sarah E. Heimbach

MSU Graduate Theses

Territorial defense in many species must be balanced with trade-offs in activities such as reproduction and predator avoidance. Adjusting behavior based on current assessments of predation risk and the cost of maintaining or gaining a territory is one way that individuals can balance trade-offs to maximize fitness. I conducted two experiments to determine how Ozark zigzag salamanders, Plethodon angusticlavius, adjust their territorial behavior-based predation risk. First, I tested whether male and female territorial intruders changed their competitive behavior according to whether predation risk is assessed via unimodal (chemical) or multimodal (chemical + physical) cues. Females and males responded differently to …