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Full-Text Articles in Physics

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost Dec 2023

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …


The Kepler Problem On Complex And Pseudo-Riemannian Manifolds, Michael R. Astwood Jan 2022

The Kepler Problem On Complex And Pseudo-Riemannian Manifolds, Michael R. Astwood

Theses and Dissertations (Comprehensive)

The motion of objects in the sky has captured the attention of scientists and mathematicians since classical times. The problem of determining their motion has been dubbed the Kepler problem, and has since been generalized into an abstract problem of dynamical systems. In particular, the question of whether a classical system produces closed and bounded orbits is of importance even to modern mathematical physics, since these systems can often be analysed by hand. The aforementioned question was originally studied by Bertrand in the context of celestial mechanics, and is therefore referred to as the Bertrand problem. We investigate the qualitative …


Hilbert Space Theory And Applications In Basic Quantum Mechanics, Matthew Gagne Jun 2013

Hilbert Space Theory And Applications In Basic Quantum Mechanics, Matthew Gagne

Mathematics

We explore the basic mathematical physics of quantum mechanics. Our primary focus will be on Hilbert space theory and applications as well as the theory of linear operators on Hilbert space. We show how Hermitian operators are used to represent quantum observables and investigate the spectrum of various linear operators. We discuss deviation and uncertainty and briefly suggest how symmetry and representations are involved in quantum theory.


Information-Preserving Structures: A General Framework For Quantum Zero-Error Information, Robin Blume-Kohout, Hui Khoon Ng, David Poulin, Lorenza Viola Dec 2010

Information-Preserving Structures: A General Framework For Quantum Zero-Error Information, Robin Blume-Kohout, Hui Khoon Ng, David Poulin, Lorenza Viola

Dartmouth Scholarship

Quantum systems carry information. Quantum theory supports at least two distinct kinds of information (classical and quantum), and a variety of different ways to encode and preserve information in physical systems. A system’s ability to carry information is constrained and defined by the noise in its dynamics. This paper introduces an operational framework, using information-preserving structures, to classify all the kinds of information that can be perfectly (i.e., with zero error) preserved by quantum dynamics. We prove that every perfectly preserved code has the same structure as a matrix algebra, and that preserved information can always be corrected. We …


Some Contributions Of Pure Math To Science, Herbert B.E. Case Jan 1897

Some Contributions Of Pure Math To Science, Herbert B.E. Case

Student and Lippitt Prize essays

An examination of the connection between math and science through discoveries in the subjects of astronomy, mechanics, physics and chemistry.