Physics Commons^™

High-Performance Computing In Covariant Loop Quantum Gravity, Pietropaolo Frisoni

Electronic Thesis and Dissertation Repository

This Ph.D. thesis presents a compilation of the scientific papers I published over the last three years during my Ph.D. in loop quantum gravity (LQG). First, we comprehensively introduce spinfoam calculations with a practical pedagogical paper. We highlight LQG's unique features and mathematical formalism and emphasize the computational complexities associated with its calculations. The subsequent articles delve into specific aspects of employing high-performance computing (HPC) in LQG research. We discuss the results obtained by applying numerical methods to studying spinfoams' infrared divergences, or ``bubbles''. This research direction is crucial to define the continuum limit of LQG properly. We investigate the …

Patterned Heating Induced Propulsion, Saajid A. Aman

Electronic Thesis and Dissertation Repository

This study explores propulsion effects generated by patterned heating acting on smooth and corrugated surfaces. The model problem assumes that the upper plate moves freely, and the lower plate is stationary, equipped with grooves, and exposed to spatially distributed heating. Our findings identify two distinct propulsion effects: thermal streaming and thermal drift. Thermal streaming occurs when given sufficient heating intensity with net flow in the left or right direction characterized by a pitchfork bifurcation. The efficiency of this technique can be controlled using the wavelength of heating. Thermal drift represents a pattern interaction effect. Its strength depends on the relative …

On The Origins Of Life — Modelling The Initial Stages Of Complex Coacervate Droplet Formation, Yixuan Wu

Western Libraries Undergraduate Research Awards (WLURAs)

Coacervate droplets are considered a plausible model for protocells due to their spontaneous formation and ability to compartmentalize macromolecules such as nucleic acid and peptides. Although experimental studies have observed and synthesized coacervates under different laboratory conditions, little is known about their structure. Here we present atomistic molecular dynamic simulations of the interactions between water and oppositely charged proteins that cluster together in a salt-dependent process. Observing such liquid-liquid phase separation on an atomic level would serve as a model for the initial stages of complex coacervate formation. Molecular Dynamics was used to compute diagnostics of the structure at different …

Interplay Of Forces In Impinging Jet Flow And Circular Hydraulic Jump, Abdelkader Baayoun

Electronic Thesis and Dissertation Repository

The circular liquid jet impingement with subsequent hydraulic jump formation is studied theoretically using boundary-layer and thin-film approaches. Three different scenarios are tackled, namely, an accelerated Newtonian jet impinging on a stationary disk, a steady Newtonian jet impinging on a rotating disk, and a steady viscoelastic liquid jet impinging on a stationary disk. Accordingly, the effects of jet acceleration, gravity, centrifugal forces, and fluid elasticity on the flow behaviour and the jump are examined. The results are validated against numerical simulation and existing measurements. The findings show that the thickness of the boundary layer developing near impingement diminishes with jet …

Feasibility Of Functional Mri On Point-Of-Care Mr Platforms, Arjama Halder

Electronic Thesis and Dissertation Repository

Magnetic resonance imaging (MRI) has proven to be a clinically valuable tool that can produce anatomical and functional images with improved soft tissue contrast compared to other imaging modalities. There has recently been a surge in low- and mid-field scanners due to hardware developments and innovative acquisition techniques. These compact scanners are accessible, offer reduced siting requirements and can be made operational at a reduced cost.

This thesis aims to implement blood-oxygen-level-dependent (BOLD) resting-state functional MRI (fMRI) at such a mid-field point-of-care scanner. The availability of this technique can be beneficial to get neurological information in cases of traumatic brain …

Towards Clinical Microscopic Fractional Anisotropy Imaging, Nico Jj Arezza

Electronic Thesis and Dissertation Repository

Microscopic fractional anisotropy (µFA) is a diffusion-weighted magnetic resonance imaging (dMRI) metric that is sensitive to neuron microstructural features without being confounded by the orientation dispersion of axons and dendrites. µFA may potentially act as a surrogate biomarker for neurodegeneration, demyelination, and other pathological changes to neuron microstructure with greater specificity than other dMRI techniques that are sensitive to orientation dispersion, such as diffusion tensor imaging. As with many advanced imaging techniques, µFA is primarily used in research studies and has not seen use in clinical settings.

The primary goal of this Thesis was to assess the clinical viability of …

Effect Of Morphology And An Upstream Tall Building On A Street Canyon Flow, Haoran Du

Electronic Thesis and Dissertation Repository

The effects of the morphological model and the existence of an upstream tall building on the turbulent street canyon flow and the overlying boundary layer are investigated in a wind tunnel, using Stereoscopic Particle Image Velocimetry (S-PIV) measurements. The velocity variances, Reynolds shear stress, and turbulent kinetic energy are found to be larger than in a similar idealized street canyon model. Increasing building height results in a decrease in vertical mass fluxes across the opening of the canyon, at least in the canyon portion directly downstream of the building. The interaction between the large-scale structures in the overlying boundary layer …

The Magnetic Field Of Protostar-Disk-Outflow Systems, Mahmoud Sharkawi

Electronic Thesis and Dissertation Repository

Recent observations of protostellar cores reveal complex magnetic field configurations that are distorted in the innermost disk region. Unlike the prestellar phase, where the magnetic field geometry is simpler with an hourglass configuration, magnetic fields in the protostellar phase are sculpted by the formation of outflows and rapid rotation. This gives rise to a significant azimuthal (or toroidal) component that has not yet been analytically modelled in the literature. Moreover, the onset of outflows, which act as angular momentum transport mechanisms, have received considerable attention in the past few decades. Two mechanisms: 1) the driving by the gradient of a …

Modelling Cell Population Growth, Mahmood Mazarei

Electronic Thesis and Dissertation Repository

The growth of biological matter, e.g., tumor invasion, depends on various factors, mainly the tissue’s mechanical properties, implying elasticity, stiffness, or apparent viscosity. These properties are impacted by the characteristics of the tissue’s extracellular matrix and constituent cells, including, but not limited to, cell membrane stiffness, cell cytoskeleton mechanical properties, and the intensity and distribution of focal adhesions over the cell membrane. To compute and study the mechanical properties of tissues during growth and confluency, a theoretical and computational framework, called CellSim3D, was developed in our group based on a three-dimensional kinetic division model.

In this work, CellSim3D is …

A Highly Charged Topic: Intrinsically Disordered Proteins And Protein Pka Values, Carter J. Wilson

Electronic Thesis and Dissertation Repository

Intrinsically disordered proteins (IDPs) are known not only for their roles in disease but also for their conformational flexibility, which makes them elusive for experimentation. We consider the role played by theory and simulation in resolving important questions pertaining to IDP structure and dynamics, as well as the nature of the charged residues (e.g., glutamate, lysine, etc.) that enrich them. Specifically, we investigated how the deep learning trained AlphaFold2 (AF2) predictor estimates disorder content, revealing both strong performance in relation to conventional approaches and an important relationship between the AF2 confidence metric and IDP dynamics. We also assessed how modern …

New Aspects Of Scattering Amplitudes, Higher-K Amplitudes, And Holographic Quark Gluon Plasmas, Bruno Giménez Umbert

Electronic Thesis and Dissertation Repository

We present new results on different aspects of quantum field theory, which are divided into three main parts. In part I, we find and prove a new behavior of massless tree-level scattering amplitudes, including the biadjoint scalar theory, the U(N) non-linear sigma model, and the special Galileon, within specific subspaces of the kinematic space. We also derive new formulas for the double-ordered biadjoint scalar and $\phi^p$ amplitudes, which can be obtained as integrals over the positive tropical Grassmannian and under limiting procedures on the kinematic invariants. This reveals surprising connections with cubic amplitudes. We also present alternative versions of the …

Galfit-Ing Agn Host Galaxies In Cosmos: Hst Versus Subaru, Callum Dewsnap, Pauline Barmby, Sarah C. Gallagher, C. Megan Urry, Aritra Ghosh, Meredith C. Powell

Physics and Astronomy Publications

The COSMOS field has been extensively observed by most major telescopes, including Chandra, HST, and Subaru. HST imaging boasts very high spatial resolution and is used extensively in morphological studies of distant galaxies. Subaru provides lower spatial resolution imaging than HST but a substantially wider field of view with greater sensitivity. Both telescopes provide near-infrared imaging of COSMOS. Successful morphological fitting of Subaru data would allow us to measure morphologies of over 104 known active galactic nucleus (AGN) hosts, accessible through Subaru wide-field surveys, currently not covered by HST. The morphological parameters indicate the types of galaxies that host AGNs. …

Solar Cells, Lambert W And The Logwright Functions, Prabhat Lankireddy, Sibibalan Jeevanandam, Aditya Chaudhary, P. C. Deshmukh, Ken Roberts, S. R. Valluri

Physics and Astronomy Publications

Algorithms that calculate the current-voltage (I-V) characteristics of a solar cell play an important role in processes that aim to improve the efficiency of a solar cell. I-V characteristics can be obtained from different models used to represent the solar cell, and the single diode model is a simple yet accurate model for common field implementations. However, the I-V characteristics are obtained by solving implicit equations, which involve repeated iterations and inherent errors associated with numerical methods used. Some methods use the Lambert W function to get an exact explicit formula, but often causes numerical overflow problems. The present work …

Modelling Of Covid-19 Using Fractional Differential Equations, Rishi Patel, P. Sainani, M. Brar, R. Patel, X. Li, J. Drozd, F. A. Chishtie, A. Benterki, T. C. Scott, S. R. Valluri

Physics and Astronomy Publications

In this work, we have described the mathematical modeling of COVID-19 transmission using fractional differential equations. The mathematical modeling of infectious disease goes back to the 1760s when the famous mathematician Daniel Bernoulli used an elementary version of compartmental modeling to find the effectiveness of deliberate smallpox inoculation on life expectancy. We have used the well-known SIR (Susceptible, Infected and Recovered) model of Kermack & McKendrick to extend the analysis further by including exposure, quarantining, insusceptibility and deaths in a SEIQRDP model. Further, we have generalized this model by using the solutions of Fractional Differential Equations to test the accuracy …

The Role Of R-Modes In Pulsar Spindown, Pulsar Timing And Gravitational Waves, Varenya Upadhyaya, Xiyuan Li, Xiyang Zhang, S. R. Valluri

Physics and Astronomy Publications

Pulsars are fast spinning neutron stars that lose their rotational energy via various processes such as gravitational and magnetic radiation, particle acceleration and mass loss processes. This dissipation can be quantified by a spin-down equation that measures the rate of change of the frequency as a function of the rotational frequency itself. We explore the pulsar spin-down and consider the spin-down equation upto the seventh order in frequency. This seventh order term accounts for energy loss due to the gravitational radiation caused by a current type quadrupole in the pulsar due to r-modes. We derive the rotational frequency due to …