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Full-Text Articles in Physics

Applied-Force Oscillations In Avalanche Dynamics, Louis W. Mcfaul, Gregory Sparks, Jordan Sickle, Jonathan T. Uhl, Wendelin J. Wright, Robert Maass, Karin A. Dahmen May 2020

Applied-Force Oscillations In Avalanche Dynamics, Louis W. Mcfaul, Gregory Sparks, Jordan Sickle, Jonathan T. Uhl, Wendelin J. Wright, Robert Maass, Karin A. Dahmen

Faculty Journal Articles

Until now most studies of discrete plasticity have focused on systems that are assumed to be driven by a monotonically increasing force; in many real systems, however, the driving force includes damped oscillations or oscillations induced by the propagation of discrete events or “slip avalanches.” In both cases, these oscillations may obscure the true dynamics. Here we effectively consider both cases by investigating the effects of damped oscillations in the external driving force on avalanche dynamics. We compare model simulations of slip avalanches under mean-field dynamics with observations in slip-avalanche experiments on slowly compressed micrometer-sized Au specimens using open-loop force …


Introduction To Molecular Dynamics Simulations, Katharina Vollmayr-Lee Apr 2020

Introduction To Molecular Dynamics Simulations, Katharina Vollmayr-Lee

Faculty Journal Articles

We provide an introduction to molecular dynamics simulations in the context of the Kob–Andersen model of a glass. We introduce a complete set of tools for doing and analyzing the results of simulations at fixed NVE and NVT. The modular format of the paper allows readers to select sections that meet their needs. We start with an introduction to molecular dynamics independent of the programming language, followed by introductions to an implementation using PYTHON and then the freely available open source software package LAMMPS. We also describe analysis tools for the quick testing of the program during its development and …


Numerical Simulation Of The Trapping Reaction With Mobile And Reacting Traps, Joshua D. Hellerick, Robert C. Rhoades, Benjamin Vollmayr-Lee Apr 2020

Numerical Simulation Of The Trapping Reaction With Mobile And Reacting Traps, Joshua D. Hellerick, Robert C. Rhoades, Benjamin Vollmayr-Lee

Faculty Journal Articles

We study a variation of the trapping reaction, A+B→A, in which both the traps (A) and the particles (B) undergo diffusion, and the traps upon meeting react according to A+A→0 or A. This two-species reaction-diffusion system is known to exhibit a nontrivial decay exponent for the B particles, and recently renormalization group methods have predicted an anomalous dimension in the BB correlation function. To test these predictions, we develop a computer simulation method, motivated by the technique of Mehra and Grassberger [Phys. Rev. E 65, 050101(R) (2002)], that determines the complete probability distribution of the B particles …