Physics Commons^™

Modeling Disorder In Proteins Yields Insights Into The Evolution Of Stability And Function, Jonathan Huihui

Electronic Theses and Dissertations

The central dogma of molecular biology dictates that a DNA sequence codes for an RNA sequence, which in turn codes for a sequence of amino acids that comprises a protein. Proteins are responsible with performing myriad functions within living organisms and most proteins require a folded structure in order to perform their function. The protein's structure is the direct link from sequence to function. This is known as the sequence - structure - function paradigm. However, this does not mean that the unfolded state is unimportant. In order to properly model the stability of the folded state, one needs to …

Majorana Nanostructures And Their Electrostatic Environment, Benjamin David Woods

Graduate Theses, Dissertations, and Problem Reports

Majorana zero modes (MZMs) are zero-energy excitations emerging in one- and two-dimensional topological superconductors. These exotic modes have attracted much attention in the last decade due to their topological protection and non-Abelian statistics, which make them possible building blocks for topological quantum computation. In particular, semiconductor-superconductor (SM-SC) nanostructures have attracted the most attention with several measurements being consistent with the presence of MZMs. Debate continues, however, whether MZMs or topologically-trivial Andreev bound states are responsible for such measurements.

In order to interpret experimental results distinguishing MZMs from Andreev bound states and gain a better understanding of what conditions need to …

Transferring Power Through A Magnetic Couple, Nickolas Cruz Villalobos Jr.

Senior Theses

Properties of several working magnetic coupled rotors have been measured and their performance compared to theoretical models. Axial magnetic couplers allow rotors to work within harsh environments, without the need for seals, proper alignment, or overload protection on a motor. The influence of geometrical parameters, such as distance from the center of the rotors, polarity arrangement, and the number of dipole pairs were experimentally tested. These results can be used to improve rotor designs, to increase strength and efficiency.

Geometries In Soft Matter, Zhenwei Yao

Physics - Dissertations

No abstract provided.

Parallel Fast Multipole Method For Molecular Dynamics, Reid G. Ormseth

Theses and Dissertations

We report on a parallel version of the Fast Multipole Method (FMM) implemented in the classical molecular dynamics code, NAMD (Not Another Molecular Dynamics program). This novel implementation of FMM aims to minimize interprocessor communication through the modification of the FMM grid to match the hybrid force and spatial decomposition scheme already present in NAMD. This new implementation has the benefit of replacing all-to-all communications broadcasts with direct communications between nearest neighbors. This results in a significant reduction in the amount of communication compared to earlier attempts to integrate FMM into common molecular dynamics programs. The early performance of FMM …

Insulator-Insulator Contact Charging As A Function Of Pressure, Michael Hogue

Electronic Theses and Dissertations

Metal - metal and to an extent metal - insulator contact or triboelectric charging are well known phenomena with good theoretical understanding of the charge exchange mechanism. However, insulator – insulator charging is not as well understood. Theoretical and experimental research has been performed that shows that the surface charge on an insulator after triboelectric charging with another insulator is rapidly dissipated with lowered atmospheric pressure. This pressure discharge is consistent with surface ions being evaporated off the surface once their vapor pressure falls below the saturation vapor pressure. A two-phase equilibrium model based on an ideal gas of singly …