Physics Commons^™

System-Level Noise Performance Of Coherent Imaging Systems, Derek J. Burrell, Joshua H. Follansbee, Mark F. Spencer, Ronald G. Driggers

Faculty Publications

We provide an in-depth analysis of noise considerations in coherent imaging, accounting for speckle and scintillation in addition to “conventional” image noise. Specifically, we formulate closed-form expressions for total effective noise in the presence of speckle only, scintillation only, and speckle combined with scintillation. We find analytically that photon shot noise is uncorrelated with both speckle and weak-to-moderate scintillation, despite their shared dependence on the mean signal. Furthermore, unmitigated speckle and scintillation noise tends to dominate coherent-imaging performance due to a squared mean-signal dependence. Strong coupling occurs between speckle and scintillation when both are present, and we characterize this behavior …

The Aquatic Particle Number Quandry, Alexander B. Bochdansky, Huanqing Huang, Maureen H. Conte

OES Faculty Publications

Optical surveys of aquatic particles and their particle size spectra have become important tools in studies of light propagation in water, classification of water masses, and the dynamics of trophic interactions affecting particle aggregation and flux. Here, we demonstrate that typical settings used in image analysis vastly underestimate particle numbers due to the particle – gel continuum. Applying a wide range of threshold values to change the sensitivity of our detection system, we show that macrogels cannot be separated from more dense particles, and that a true particle number per volume cannot be ascertained; only relative numbers in relation to …

A Vibrational Spectroscopic Based Approach For Diagnosing Babesia Bovis Infection, Anja Ruther, David Perezguaita, William Poole, Brian Cooke, Carlos Suarez, Philip Heraud, Bayden Wood

Articles

Babesia bovis parasites present a serious and significant health concern for the beef and dairy industries in many parts of the world. Difficulties associated with the current diagnostic techniques include they are prone to human error (microscopy) or expensive and time consuming (Polymerase Chain Reaction) to perform. Little is known about the biochemical changes in blood that are associated with Babesia infections. The discovery of new biomarkers will lead to improved diagnostic outcomes for the cattle industry. Vibrational spectroscopic technologies can record a chemical snapshot of the entire organism and the surrounding cell thereby providing a phenotype of the organism …

9th Annual Postdoctoral Science Symposium, University Of Texas Md Anderson Cancer Center Postdoctoral Association

Annual Postdoctoral Science Symposium Abstracts

The mission of the Annual Postdoctoral Science Symposium (APSS) is to provide a platform for talented postdoctoral fellows throughout the Texas Medical Center to present their work to a wider audience. The MD Anderson Postdoctoral Association convened its inaugural Annual Postdoctoral Science Symposium (APSS) on August 4, 2011.

The APSS provides a professional venue for postdoctoral scientists to develop, clarify, and refine their research as a result of formal reviews and critiques of faculty and other postdoctoral scientists. Additionally, attendees discuss current research on a broad range of subjects while promoting academic interactions and enrichment and developing new collaborations.

Roadmap On Superoscillations, Michael Berry, Nicolay Zheludev, Yakir Aharonov, Fabrizio Colombo, Irene Sabadini, Daniele C. Struppa, Jeff Tollaksen, Edward T. F. Rogers, Fei Qin, Minghui Hong, Xiangang Luo, Roei Remez, Ady Arie, Jörg B. Götte, Mark R. Dennis, Alex M. H. Wong, George V. Eleftheriades, Yaniv Eliezer, Alon Bahabad, Gang Chen, Zhongquan Wen, Gaofeng Liang, Chenglong Hao, C-W Qiu, Achim Kempf, Eytan Katzav, Moshe Schwartz

Mathematics, Physics, and Computer Science Faculty Articles and Research

Superoscillations are band-limited functions with the counterintuitive property that they can vary arbitrarily faster than their fastest Fourier component, over arbitrarily long intervals. Modern studies originated in quantum theory, but there were anticipations in radar and optics. The mathematical understanding—still being explored—recognises that functions are extremely small where they superoscillate; this has implications for information theory. Applications to optical vortices, sub-wavelength microscopy and related areas of nanoscience are now moving from the theoretical and the demonstrative to the practical. This Roadmap surveys all these areas, providing background, current research, and anticipating future developments.

Estimating And Correcting Interference Fringes In Infrared Spectra In Infrared Hyperspectral Imaging, Ghazal Azarfar, Ebrahim Aboualizadeh, Nicholas Walter,, Simona Ratti, Camilla Olivieri, Alessandra Alessandra, Michael Nasse, Achim Kohler, Mario Giordano, Carol Hirschmugl

Physics Faculty Articles

Short-term acclimation response of individual cells of Thalassiosira weissflogii was monitored by Synchrotron FTIR imaging over the span of 75 minutes. The cells, collected from batch cultures, were maintained in a constant flow of medium, at an irradiance of 120 μmol m−2 s−1 and at 20 °C. Multiple internal reflections due to the micro fluidic channel were modeled, and showed that fringes are additive sinusoids to the pure absorption of the other components of the system. Preprocessing of the hyperspectral cube (x, y, Abs(λ)) included removing spectral fringe using an EMSC approach. Principal component analysis of the time series of …

Comparing Multiple Turbulence Restoration Algorithms Performance On Noisy Anisoplanatic Imagery, Michael Armand Rucci, Russell C. Hardie, Alexander J. Dapore

Electrical and Computer Engineering Faculty Publications

In this paper, we compare the performance of multiple turbulence mitigation algorithms to restore imagery degraded by atmospheric turbulence and camera noise. In order to quantify and compare algorithm performance, imaging scenes were simulated by applying noise and varying levels of turbulence. For the simulation, a Monte-Carlo wave optics approach is used to simulate the spatially and temporally varying turbulence in an image sequence. A Poisson-Gaussian noise mixture model is then used to add noise to the observed turbulence image set. These degraded image sets are processed with three separate restoration algorithms: Lucky Look imaging, bispectral speckle imaging, and a …

Depth-Resolved Multispectral Sub-Surface Imaging Using Multifunctional Upconversion Phosphors With Paramagnetic Properties, Zaven Ovanesyan, L. Christopher Mimun, Gangadharan Ajith Kumar, Brian G. Yust, Chamath Dannongoda, Karen S. Martirosyan, Dhiraj K. Sardar

Physics and Astronomy Faculty Publications and Presentations

Molecular imaging is very promising technique used for surgical guidance, which requires advancements related to properties of imaging agents and subsequent data retrieval methods from measured multispectral images. In this article, an upconversion material is introduced for subsurface near-infrared imaging and for the depth recovery of the material embedded below the biological tissue. The results confirm significant correlation between the analytical depth estimate of the material under the tissue and the measured ratio of emitted light from the material at two different wavelengths. Experiments with biological tissue samples demonstrate depth resolved imaging using the rare earth doped multifunctional phosphors. In …

Constructing A Flat Field For Scientific Astronomical Imaging, Catharine Bunn

Physics Capstone Projects

There are consistent problems that occur during the process of capturing astronomical images which cause defects to be present on the raw image captured. Some of these problems include vignetting, dust on the lens or the digital sensor’s surface, and dead or less sensitive pixels. This is a problem when the images are meant to be used in photometry, where the brightness of each pixel is taken into account. One can simply clean all surfaces of dust, but it will always come back. A more solid solution is to use a calibration frame called a “flat field” to correct each …

Evaluation Of Cirs String Doppler Phantom As A Test Tool For Use In A Doppler Ultrasound Quality Assurance Program, Jacinta Browne, S. Cournane, Andrew Fagan

Articles

Ultrasound Doppler systems are routinely used to perform blood flow velocity measurements which assist in the clinical assessment and diagnosis of vascular. Doppler measurements of peak velocities for vascular applications provide an indication of the degree of the stenosis which will ultimately assist in deciding how a patient is managed. It is imperative that Doppler systems are capable of accurately measuring blood flow velocities to ensure correct diagnosis and appropriate patient treatment; therefore such systems should be evaluated regularly as part of a Quality Assurance program. Although a range of Doppler test phantoms have been developed for quality control (QC) …

High-Frequency Rapid B-Mode Ultrasound Imaging For Real-Time Monitoring Of Lesion Formation And Gas Body Activity During High-Intensity Focused Ultrasound Ablation, Madhu Sudhan Reddy Gudur, Ronald Kumon, Yun Zhou, Cheri X. Deng

Physics Publications

Abstract:

The goal of this study was to examine the ability of high-frame-rate, high-resolution imaging to monitor tissue necrosis and gas-body activities formed during high-intensity focused ultrasound (HIFU) application. Ex vivo porcine cardiac tissue specimens (n = 24) were treated with HIFU exposure (4.33 MHz, 77 to 130 Hz pulse repetition frequency (PRF), 25 to 50% duty cycle, 0.2 to 1 s, 2600 W/cm2). RF data from Bmode ultrasound imaging were obtained before, during, and after HIFU exposure at a frame rate ranging from 77 to 130 Hz using an ultrasound imaging system with a center frequency of 55 MHz. …

Use Of Second Harmonic Generation (Shg) Imaging For 3-Dimensional Ultrastructural Visualization Of Muscle Repair Mechanisms, Matthew Dufner

Honors Scholar Theses

In this study, we have combined SHG imaging with various fluorescent dyes which are designed to stain nuclei and used a skeletal muscle injury and regeneration model to establish the ability of this approach to reliably and reproducibly evaluate the above nuclear parameters. By using the cobra cardiotoxin (CTX-1), which creates acute well defined injuries within the muscle, on the tibialis anterior (TA) and gastrocnemius hind limb muscles of mice, predictable and reproducible regenerative patterns (in response to acute injury) can be observed by harvesting muscle samples at specific time points during recovery. Through SHG imaging, we endeavor to document …

The Effects Of Fatty Desposits On The Accuracy Of The Fibroscan Liver Transient Elastography Ultrasound System, S. Cournane, Jacinta Browne, Andrew Fagan

Articles

A new generation of ultrasound transient elastography (TE) systems have emerged which exploit the well-known correlation between the liver’s pathological and mechanical properties through measurements of the Young’s elastic modulus; however, little work has been carried out to examine the effect that fatty deposits may have on the TE measurement accuracy. An investigation was carried out on the effects on the measurement accuracy of a transient elastography ultrasound system, the Fibroscan®, caused by overlaying fat layers of varying thickness on healthy liver-mimicking phantoms, simulating in vivo conditions for obese patients. Furthermore, a steatosis effect similar to that in non-alcoholic fatty …

A Multi-Diagnostic Investigation Of Mesospheric Bore Phenomenon, S. M. Smith, Michael J. Taylor, G. R. Swenson, C. Y. She, W. Hocking, J. Baumgardner, M. Mendillo

All Physics Faculty Publications

Imaging measurements of a bright wave event in the nighttime mesosphere were made on 14 November 1999 at two sites separated by over 500 km in the southwestern United States. The event was characterized by a sharp onset of a series of extensive wavefronts that propagated across the entire sky. The waves were easily visible to the naked eye, and the entire event was observed for at least 5 1 2 hours. The event was observed using three wide-angle imaging systems located at the Boston University field station at McDonald Observatory (MDO), Fort Davis, Texas, and the Starfire Optical Range …

Mim And Nonlinear Least-Squares Inversions Of Aem Data In Barataria Basin, Louisiana, Melissa Whitten Bryan, Kenneth W. Holladay, Clyde J. Bergeron Jr., Juliette W. Ioup, George E. Ioup

Physics Faculty Publications

An airborne electromagnetic survey was performed over the marsh and estuarine waters of the Barataria basin of Louisiana. Two inversion methods were applied to the measured data to calculate layer thicknesses and conductivities: the modified image method (MIM) and a nonlinear least-squares method of inversion using two two-layer forward models and one three-layer forward model, with results generally in good agreement. Uniform horizontal water layers in the near-shore Gulf of Mexico with the fresher (less saline, less conductive) water above the saltier (more saline, more conductive) water can be seen clearly. More complex near-surface layering showing decreasing salinity/conductivity with depth …

Image Restoration Of Dispersion-Degraded Images From A Liquid-Crystal Beam Steerer, Ronald J. Broessel, Vince Dominic, Russell C. Hardie

Electrical and Computer Engineering Faculty Publications

Liquid-crystal arrays represents one of the first practical technologies capable of steering light by electronic control only. We use such a device to steer the field of view of a broadband imaging sensor. Unfortunately, dispersion degrades the image quality by smearing out details in the image and by introducing multiple diffraction orders (echoes) at the detector plane. We present a method to compensate for these unwanted effects and thus restore the broadband images obtained with the beam steerer. We use the beam-propagation method to find the wavelength-dependent impulse response, from which we determine the appropriate Wiener filter. When training data …

Spectrometric And Imaging Measurements Of A Spectacular Gravity Wave Event Observed During The Aloha-93 Campaign, Michael J. Taylor, D. N. Turnbull, R. P. Lowe

All Physics Faculty Publications

During the ALOHA‐93 campaign coincident imaging and interferometric measurements of the near infrared and visible wavelength nightglow emissions were made from Haleakala Crater, Maui. On 10 October, 1993 a most unusual wave event was observed. This disturbance appeared as a sharp “front” followed by several conspicuous wave crests which progressed rapidly through the imager's field of view (180°). As the front passed overhead the interferometer detected a sudden jump in both the OH intensity (>50%) and its rotational temperature (∼20 K) with the temperature increase leading the intensity by almost 15 min. At the same time the imager registered …

Near-Infrared Imaging Of Hydroxyl Wave Structure Over An Ocean Site At Low Latitudes, Michael J. Taylor, M. J. Hill

All Physics Faculty Publications

Coordinated observations of wave structure in the near infrared hydroxyl (OH) nightglow emission have been made from Maui, Hawaii using a suite of narrow angle and all‐sky TV cameras. Two sets of data were obtained, the first in conjunction with the ALOHA‐90 campaign and the second during the subsequent new moon period. Well formed, short period (<20 min) wave patterns of comparable morphology, dynamics and abundance to those regularly imaged from mid‐latitude mountain sites were detected on several occasions. Although the Hawaiian islands comprise several high volcanic peaks, the patterns were not consistent with gravity waves generated by the interaction of strong winds with the local island topography. This suggests that other mid‐latitude wave patterns may also not be of mountain origin. The wave patterns imaged during ALOHA‐90 were of significantly lower contrast than those detected later. This effect may be related to changes in the characteristics of the middle atmosphere that occur shortly after the spring equinox.