Physics Commons^™

Examining Artifacts Of The Watershed Segmentation, Emily Jo Armitage

Electronic Theses and Dissertations

The watershed segmentation is an algorithm used to systematically track cell intercalary behaviors during germ band extension of the Drosophila embryo. Neighboring cells share a contracting vertical interface, called a T1, which continues contracting to a single point, a T2, and extending in the horizontal direction to create what is called a T3 interface (Fig. 1). Additionally, higher order vertices called rosettes occur when five or more cells meet at a common vertex. Simulated T2 events demonstrate that cell angle and not noise level in the image contributes to the incorrect detection of artifactual T1s in more acute angled cells …

Sensitivity Of Radical Sam Enzyme Mftc To Molecular Oxygen, Vishnu Govindarajan

Electronic Theses and Dissertations

MftC is a radical S-adenosyl L-methionine (SAM) enzyme that catalyzes the first step in the production of mycofactocin. It is a ribosomally synthesized post-translationally modified (RiPP) redox cofactor shown to be essential for the survival of bacteria in the Mycobacterium genus in the presence of cholesterol as a carbon source and for the sequestration of ethanol. MftC catalyzes the C – terminal decarboxylation of tyrosine and the subsequent cross-linking of tyrosine to the penultimate valine on the precursor peptide MftA. The product formed out of the reaction is processed into mycofactocin in downstream processes. The bacteria in the Mycobacterium tuberculosis …

Quantification Of Dynamic Epithelial Sheet Architecture In Botryllus Schlosseri Using 2-D & 3-D Image Analysis, Roopa Madhu

Electronic Theses and Dissertations

Epithelial tubules form critical structures in various body tissues; how- ever, since they are difficult to access experimentally, their architecture and dynamics are not well understood. Here we examine the dynamic remodeling of epithelial tubes in vivo using a novel and uniquely accessible model system: the extracorporeal vasculature of Botryllus schlosseri (sea squirt). In Botryllus, massive retraction of blood vessels can be triggered without loss of barrier function, through (i) disrupting collagen crosslinking in the basement membrane using β-aminopropionitrile (BAPN); or (ii) disrupting the integrin pathway through inhibition of focal adhesion kinase (FAK). We performed stereographic projections of 3-dimensional …

Gas Adsorption In Carbon Nanohorns: Equilibrium And Kinetics, Justin Matthew Petucci

Electronic Theses and Dissertations

A study of gas adsorption has been carried out with the focus of better understanding the relationships between the individual properties of the adsorbent/adsorbate (e.g. material structure, interactions, gas size and shape, etc.) and the overall adsorptive properties of the combined system (e.g. capacity, binding strength, equilibration time, etc.) as a function of thermodynamical variables. This is useful from the perspective of a comprehensive and fundamental understanding as well as for practical applications. The equilibrium regime of adsorption on carbon nanostructure materials (nanohorns, nanotubes, and graphite) is investigated using molecular statics (MS) and grand canonical monte carlo (GCMC) methods for …

Multidimensional Spectroscopy Of Mixed-Cation Perovskite Thin Films, Geoffrey Michael Diederich

Electronic Theses and Dissertations

Metal halide perovskite (MHP) thin films are currently undergoing an intense re- search thrust due to the excellent performance of MHP based photovoltaic (PV) devices, which have the potential to revolutionize the worlds energy production via a unique combination of low-cost fabrication and high power conversion efficiency (PCE). However, the vast majority of research is currently aimed at incremental improvements in device PCE, resulting in a body of work without the foundational understanding of the charge-carrier dynamics of the system upon photoexcitation.

This thesis begins with the development of a phase-modulated multidimensional coherent spectroscopy (PM-MDCS) experiment. PM-MDCS is an ultrafast …

Characterization Of The Atcc Α-Tc1-6 Pancreatic Alpha Cell Line To Study Glucagon Secretion, Larissa M. Ikenouye

Electronic Theses and Dissertations

The endocrine pancreas is responsible for maintaining glycemic equilibrium in the body. Given the importance of this blood-glucose homeostasis and the implication an unbalance has on Diabetes mellitus, the study of the glucose-sensing alpha and beta cells in the pancreas is a popular field for scientific researchers. In this study, we use immunofluorescence, qPCR analysis, intracellular calcium experiments, and biochemical glucagon secretion assays to determine if the commercially available tumor cell line clone, α-TC1-6 obtained from American Type Culture Collection, is an appropriate model system for glucagon secretion in pancreatic alpha cells. We confirm the production of the hormone peptide …

Measurement Of Low Temperature Thermal Properties Of Microcalorimeters Using Johnson Noise Thermometry, Dain Bassett

Electronic Theses and Dissertations

Calorimetric measurments and thermal transport measurments through a-Si_xN_y suspended membranes have been performed to further the understanding of low temperature thin film thermal transport, and understand the interesting physics present within an amorphous dielectric material. The thermal properties of several calorimeters have been measured to understand the geometric dependence on transport phenomenon. We analyze and compare our results with observations of previous measurements, and with those indicating quantum limited thermal transport. We see strong indications of changes to the physical mechanism transporting heat through these materials as temperature changes from 50 mK to 2 K. We have …

Nanoscale Thermoelectrics: A Study Of The Absolute Seebeck Coefficient Of Thin Films, Sarah J. Mason

Electronic Theses and Dissertations

The worlds demand for energy is ever increasing. Likewise, the environmental impact of climate change due generating that energy through combustion of fossil fuels is increasingly alarming. Due to these factors new sources of renewable energies are constantly being sought out. Thermoelectric devices have the ability to generate clean, renewable, energy out of waste heat. However promising that is, their inefficiency severely inhibits applicability and practical use. The usefulness of a thermoelectric material increases with the dimensionless quantity, ZT, where, Z = S²σ/κ, and S, σ, and κ are the Seebeck coefficient and electrical and thermal …

Defects And Dark Current In Organic Photovoltaics And Impacts On Device Physics, Xin Jiang

Electronic Theses and Dissertations

In this dissertation, we discussed the shape, energy level and density of defects in Organic Photovoltaic (OPV) devices by both theoretical and experimental methods. The energy band structure and intrinsic junctions of general standard and inverted OPV devices are investigated in detail. Transportation of separated holes and electrons in both structures are well analyzed. In chapter II, we developed a Monte-Carlo model to simulate charge transport process in organic materials. Marcus theory is applied to calculate the carrier transfer rate to build up hopping process in ideal lattices. Results of this model showed several properties of carriers regarding mobility, reorganization …

Lamination Of Inverted Organic Photovoltaics And Associated Physical Properties, Brian A. Bailey

Electronic Theses and Dissertations

This dissertation is the result of a series of studies involving hot press lamination of inverted organic photovoltaics. It first gives background and develops a lamination process for fabrication. Then, the process is used to answer fundamental questions about organic photovoltaics and to fabricate previously impossible or overly complicated devices. Finally, the author examines the scientific theory which describes the process and aligns that theory with related measurements.

The field of organic photovoltaics is introduced and the lamination process is developed and optimized. In the lamination process, part of the solar cell is deposited onto a rigid substrate, and the …

Modeling Of Growth Kinetics And Characterization Of Membrane Mechanics, Antonio Nava

Electronic Theses and Dissertations

One growing field in alternative energy is biofuel production through microorganisms. These fields of research include hydrogen and biofuel production through the cultivation of algae. We've selected 2 different algae, Anabaena sp. cpcc 387 and Tetraselmis to study. Through mathematical modeling of Anabaena we investigate the complex multicellular relationships and colony stability when noise is introduced. In conjunction with researchers at NREL, we've set out to characterize Tetraselmis cells' membrane elasticity.

Analysis Of Interphase Chromatin Motion In Hela Cells, Matthew Joel Westacott

Electronic Theses and Dissertations

Motion of particles under influencing forces may be observed under light microscopy techniques. Variations in mobility of particles may give relevant biophysical information. Automated high resolution single particle tracking techniques were used to characterize interphase chromatin mobility in the cell nucleus. Interphase chromatin undergo replication prior to cell division with the assistance of replication proteins (machinery) which modify chromatin mobility. Using dual color imaging of flourescently tagged chromatin and proliferating cell nuclear antigen (PCNA) were followed through interphase. Chromatin motion was modelled as a two dimensional random walk. Reduction in chromatin mobility was observed during S phase was dependent on …

Measurement Of Thermoelectric Properties Of Amorphous Silicon Based Thin Films, Rubina Sultan

Electronic Theses and Dissertations

It is important to understand thermal transport behavior in materials for technological and fundamental physics applications. Many efforts have been made in the past for explaining thermal conduction in solids. It has been observed that thermal transport properties may change with reducing size of the sample, especially as sample size approaches the nanoscale regime. The deviation in these properties, mainly in thermal conductivity, may change the choice of the material for different applications such as thermoelectricity. Thermoelectric materials are a possible source of sustainable energy and can play an important role in the fight against the present energy crisis. Recently, …