Physics Commons^™

Modeling Accuracy Matters: Aligning Molecular Dynamics With 2d Nmr Derived Noe Restraints, Milan Patel

Honors Scholar Theses

Among structural biology techniques, Nuclear Magnetic Resonance (NMR) provides a holistic view of structure that is close to protein structure in situ. Namely, NMR imaging allows for the solution state of the protein to be observed, derived from Nuclear Overhauser Effect restraints (NOEs). NOEs are a distance range in which hydrogen pairs are observed to stay within range of, and therefore experimental data which computational models can be compared against. To that end, we investigated the effects of adding the NOE restraints as distance restraints in Molecular Dynamics (MD) simulations on the 24 residue HP24stab derived villin headpiece subdomain to …

Infinite Volume Reconstruction Method Qed Pion Mass Corrections On The Lattice, Michael Riberdy

Honors Scholar Theses

We use the Infinite Volume Reconstruction Method to calculate the charged/neutral pion mass difference. The hadronic tensor is calculated on the lattice using a QCD+QED framework, and the mass shift is calculated with exponentially-suppressed finite volume errors. In this paper we discuss the Feynman diagrams relevant to the pion mass difference and we recapitulate the advantages of the Infinite Volume Reconstruction Method. We then discuss the extrapolation to the continuum limit, and report a charged/neutral pion mass difference of 4.52 MeV, which is within 1.44% of the accepted value.

Ultracold Trimer Ion Formation Of Rb And K, Michael Cantara

University Scholar Projects

The cooling of molecules into the ultracold regime allows for high resolution laser spectroscopy that reveals their complex rotational and vibrational structure. As the temperature is lowered towards absolute zero, the kinetic energy of the particles approaches zero, and therefore the Doppler shift approaches zero. With the Doppler shift negligibly small, spectral resolution is now primarily limited by the natural linewidth of the molecular peaks. Further, ultracold temperatures make possible the production of atoms or molecules that will reside in the lowest few states of the system. The high population in a few select states provides stronger and less congested …

Design Of Electronics For A High-Energy Photon Tagger For The Gluex Experiment, Mitchell "Woody" Underwood

Honors Scholar Theses

In quantum chromodynamics (QCD), quarks and antiquarks are held together inside hadrons by the nuclear strong force, which is mediated by exchange particles known as gluons. The simplest type of hadron, the meson, consists of a single quark and a single antiquark bound by a gluonic field. The flux-tube model of QCD says that this gluonic field forms a tube of color-electric field lines between the quark and the antiquark which can under the right conditions be made to vibrate. Such mesons with excited glue are called hybrid mesons.

GlueX is a high-energy nuclear physics experiment which will study hybrid …