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Biological and Chemical Physics

Richard C. Holz

2015

Articles 1 - 4 of 4

Full-Text Articles in Physics

Spectroscopically Distinct Cobalt(Ii) Sites In Heterodimetallic Forms Of The Aminopeptidase From Aeromonas Proteolytica:  Characterization Of Substrate Binding, Brian Bennett, Richard Holz Mar 2015

Spectroscopically Distinct Cobalt(Ii) Sites In Heterodimetallic Forms Of The Aminopeptidase From Aeromonas Proteolytica:  Characterization Of Substrate Binding, Brian Bennett, Richard Holz

Richard C. Holz

The Co(II)Zn(II)- and Zn(II)Co(II)-substituted derivatives of the aminopeptidase from Aeromonas proteolytica (AAP) were probed by EPR spectroscopy. EPR spectra of the high-spin S = 3/2 Co(II) ions in [CoZn(AAP)] and [ZnCo(AAP)] indicated that each metal binding site provides a spectroscopically distinct signature. For [CoZn(AAP)], subtraction of EPR spectra recorded at pH 7.5 and 10 revealed that two species were present and that the relative contributions to each of the experimental spectra were pH-dependent. The first EPR species, predominant at lower pH values, was simulated as a relatively featureless axial signal with geff values of 2.20, 3.92, and …


1-Butaneboronic Acid Binding To Aeromonas Proteolytica Aminopeptidase:  A Case Of Arrested Development, Carin C. De Paola, Brian Bennett, Richard C. Holz, Dagmar Ringe, Gregory A. Petsko Mar 2015

1-Butaneboronic Acid Binding To Aeromonas Proteolytica Aminopeptidase:  A Case Of Arrested Development, Carin C. De Paola, Brian Bennett, Richard C. Holz, Dagmar Ringe, Gregory A. Petsko

Richard C. Holz

Hydrolases containing two metal ions connected by a bridging ligand catalyze reactions important in carcinogensis, tissue repair, post-translational modification, control and regulation of biochemical pathways, and protein degradation. The aminopeptidase from Aeromonas proteolytica serves as a paradigm for the study of such bridged bimetallic proteases since its three-dimensional structure is known to very high resolution and its catalytic reaction is amenable to spectroscopic examination. Herein, we report the X-ray crystal structure at 1.9 Å resolution of AAP complexed with 1-butaneboronic acid (BuBA). This structure suggests that this complex represents a snapshot of the proteolytic reaction in an arrested form between …


Epr Studies On The Mono- And Dicobalt(Ii)-Substituted Forms Of The Aminopeptidase From Aeromonas Proteolytica. Insight Into The Catalytic Mechanism Of Dinuclear Hydrolases, Brian Bennett, Richard C. Holz Mar 2015

Epr Studies On The Mono- And Dicobalt(Ii)-Substituted Forms Of The Aminopeptidase From Aeromonas Proteolytica. Insight Into The Catalytic Mechanism Of Dinuclear Hydrolases, Brian Bennett, Richard C. Holz

Richard C. Holz

The structure and function of the prototypical dinuclear hydrolase, namely, the aminopeptidase from Aeromonas proteolytica (AAP), was probed by EPR spectroscopy of the mono- and dicobalt(II)-substituted derivatives. A new systematic protocol for the interpretation of Co(II) EPR spectra is described and the S = 3/2 spin states of the Co(II)-substituted forms of the enzyme have been characterized. This protocol allows the simulation of line shape using theoretically allowed geff values corresponding to an isotropic greal value. In addition, the gross distortion of EPR spectra of high-spin S = 3/2 Co(II) ions has been investigated, and the effects of saturation on …


Synthesis, Molecular Structure, And Reactivity Of Dinuclear Copper(Ii) Complexes With Carboxylate-Rich Coordination Environments, Richard Holz, John Bradshaw, Brian Bennett Mar 2015

Synthesis, Molecular Structure, And Reactivity Of Dinuclear Copper(Ii) Complexes With Carboxylate-Rich Coordination Environments, Richard Holz, John Bradshaw, Brian Bennett

Richard C. Holz

The dinucleating ligand N,N‘-(2-hydroxy-5-methyl-1,3-xylylene)bis(N-(carboxymethyl)glycine) (CH3HXTA) has been used to synthesize the dinuclear Cu(II) bis(pyridine) complex Na[Cu2(CH3HXTA)(Py)2]·1.5(1,4-dioxane) (Na(1)):  triclinic space group P1̄ (a = 12.550(3) Å, b = 13.413(3) Å, c = 13.540(4) Å, α = 117.12(2)°, β = 104.70 (2)°, and γ = 92.13(2)°). The structure shows two distinct distorted square pyramidal Cu(II) centers with each Cu(II) ion bound by two carboxylate oxygen atoms, one amine nitrogen atom, a phenolate oxygen atom, and one pyridine nitrogen atom. The Cu--Cu separation is 3.531 Å, …