Mathematics Commons^™

Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi

John David N. Dionisio

GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …

Microstructural Analysis Of Thermoelastic Response, Nonlinear Creep, And Pervasive Cracking In Heterogeneous Materials, Alden C. Cook

Electronic Theses and Dissertations

This dissertation is concerned with the development of robust numerical solution procedures for the generalized micromechanical analysis of linear and nonlinear constitutive behavior in heterogeneous materials. Although the methods developed are applicable in many engineering, geological, and materials science fields, three main areas are explored in this work. First, a numerical methodology is presented for the thermomechanical analysis of heterogeneous materials with a special focus on real polycrystalline microstructures obtained using electron backscatter diffraction techniques. Asymptotic expansion homogenization and finite element analysis are employed for micromechanical analysis of polycrystalline materials. Effective thermoelastic properties of polycrystalline materials are determined and compared …

Investigation Of Sparsifying Transforms In Compressed Sensing For Magnetic Resonance Imaging With Fasttestcs, Christopher Adams Baker

Theses and Dissertations

The goal of this contribution is to achieve higher reduction factors for faster Magnetic Resonance Imaging (MRI) scans with better Image Quality (IQ) by using Compressed Sensing (CS). This can be accomplished by adopting and understanding better sparsifying transforms for CS in MRI. There is a tremendous number of transforms and optional settings potentially available. Additionally, the amount of research in CS is growing, with possible duplication and difficult practical evaluation and comparison. However, no in-depth analysis of the effectiveness of different redundant sparsifying transforms on MRI images with CS has been undertaken until this work. New theoretical sparsity bounds …

A Traders Guide To The Predictive Universe- A Model For Predicting Oil Price Targets And Trading On Them, Jimmie Harold Lenz

Doctor of Business Administration Dissertations

At heart every trader loves volatility; this is where return on investment comes from, this is what drives the proverbial “positive alpha.” As a trader, understanding the probabilities related to the volatility of prices is key, however if you could also predict future prices with reliability the world would be your oyster. To this end, I have achieved three goals with this dissertation, to develop a model to predict future short term prices (direction and magnitude), to effectively test this by generating consistent profits utilizing a trading model developed for this purpose, and to write a paper that anyone with …

Fractal Analysis Of Dna Sequences, Christian G. Arias, Pedro Antonio Moreno Phd, Carlos Tellez

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Longitudinal Success Of Calculus I Reform, Doug Bullock, Kathrine E. Johnson, Janet Callahan

Janet M. Callahan

This paper describes the second year of an ongoing project to transform calculus instruction at Boise State University. Over the past several years, Calculus I has undergone a complete overhaul that has involved a movement from a collection of independent, uncoordinated, personalized, lecture-based sections, into a single coherent multi-section course with an activelearning pedagogical approach. The overhaul also significantly impacted the course content and learning objectives. The project is now in its fifth semester and has reached a steady state where the reformed practices are normative within the subset of instructors who might be called upon to teach Calculus I. …

Simulation And Optimization Of Ant Colony Optimization Algorithm For The Stochiastic Uncapacitated Location-Allocation Problem, Jean-Paul Arnaout, Georges Arnaout, John El Khoury

Engineering Management & Systems Engineering Faculty Publications

This study proposes a novel methodology towards using ant colony optimization (ACO) with stochastic demand. In particular, an optimizationsimulation-optimization approach is used to solve the Stochastic uncapacitated location-allocation problem with an unknown number of facilities, and an objective of minimizing the fixed and transportation costs. ACO is modeled using discrete event simulation to capture the randomness of customers’ demand, and its objective is to optimize the costs. On the other hand, the simulated ACO’s parameters are also optimized to guarantee superior solutions. This approach’s performance is evaluated by comparing its solutions to the ones obtained using deterministic data. The results …

99mtc-Hexamethylpropyleneamine Oxime Imaging For Early Detection Of Acute Lung Injury In Rats Exposed To Hyperoxia Or Lipopolysaccharide Treatment, Said H. Audi, Anne V. Clough, Steven T. Haworth, Meetha Medhora, Mahsa Ranji, John C. Densmore, Elizabeth R. Jacobs

Biomedical Engineering Faculty Research and Publications

^99mTc-Hexamethylpropyleneamine oxime (HMPAO) is a clinical single-photon emission computed tomography biomarker of tissue oxidoreductive state. Our objective was to investigate whether HMPAO lung uptake can serve as a preclinical marker of lung injury in two well-established rat models of human acute lung injury (ALI).

Rats were exposed to >95% O₂ (hyperoxia) or treated with intratracheal lipopolysaccharide (LPS), with first endpoints obtained 24 h later. HMPAO was administered intravenously before and after treatment with the glutathione-depleting agent diethyl maleate (DEM), scintigraphy images were acquired, and HMPAO lung uptake was quantified from the images. We also measured breathing rates, heart …

Grnsight: A Web Application And Service For Visualizing Models Of Small- To Medium-Scale Gene Regulatory Networks, Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi

Biology Faculty Works

GRNsight is a web application and service for visualizing models of gene regulatory networks (GRNs). A gene regulatory network (GRN) consists of genes, transcription factors, and the regulatory connections between them which govern the level of expression of mRNA and protein from genes. The original motivation came from our efforts to perform parameter estimation and forward simulation of the dynamics of a differential equations model of a small GRN with 21 nodes and 31 edges. We wanted a quick and easy way to visualize the weight parameters from the model which represent the direction and magnitude of the influence of …

Using In Situ Liquid Single Photon Ionization Mass Spectrometry (Spi-Ms) To Probe Lithium Polysulfide Electrolyte In Motion, Aala M. Al Hasan, Jiachao Yu, Juan Yao, Vijayakumar Murugesan, Manjula Nandasiri, Xiao-Ying Yu

STAR Program Research Presentations

The solid-liquid (s-l) interface is the most common interface encountered in electrochemical systems. The s-l interface has wide applications in energy storage, catalysis, and material sciences. In situ studies of chemical reactions taking place on the s-l interfaces can further our understanding of electron transfer and link to real-world device functions under challenging conditions. Direct probing of the solid electrode and liquid electrolyte interface has been realized using a vacuum compatible electrochemical microfluidic reactor, system for analysis at the liquid vacuum interface (SALVI) with time-of-flight secondary ion mass spectrometry (ToF-SIMS). Most recently, the electrochemical version of SALVI was integrated to …

Applications Of The Homotopy Analysis Method To Optimal Control Problems, Shubham Singh

Open Access Theses

Traditionally, trajectory optimization for aerospace applications has been performed using either direct or indirect methods. Indirect methods produce highly accurate solutions but suer from a small convergence region, requiring initial guesses close to the optimal solution. In past two decades, a new series of analytical approximation methods have been used for solving systems of dierential equations and boundary value problems.

The Homotopy Analysis Method (HAM) is one such method which has been used to solve typical boundary value problems in nance, science, and engineering. In this investigation, a methodology is created to solve indirect trajectory optimization problems using the Homotopy …

Ogden College Of Science & Engineering Newsletter (Summer 2016), Cheryl Stevens, Dean

Ogden College of Science & Engineering Publications

No abstract provided.

Pythagorean Combinations For Lego Robot Building., Ronald I. Greenberg

Computer Science: Faculty Publications and Other Works

This paper provides tips for LEGO robot construction involving bracing or gear meshing along a diagonal using standard Botball kits.

Quantum Random Number Generation Using A Quanta Image Sensor, Emna Amri, Yacine Felk, Damien Stucki, Jiaju Ma, Eric Fossum

Dartmouth Scholarship

A new quantum random number generation method is proposed. The method is based on the randomness of the photon emission process and the single photon counting capability of the Quanta Image Sensor (QIS). It has the potential to generate high-quality random numbers with remarkable data output rate. In this paper, the principle of photon statistics and theory of entropy are discussed. Sample data were collected with QIS jot device, and its randomness quality was analyzed. The randomness assessment method and results are discussed.

Longitudinal Success Of Calculus I Reform, Doug Bullock, Kathrine E. Johnson, Janet Callahan

Mathematics Faculty Publications and Presentations

This paper describes the second year of an ongoing project to transform calculus instruction at Boise State University. Over the past several years, Calculus I has undergone a complete overhaul that has involved a movement from a collection of independent, uncoordinated, personalized, lecture-based sections, into a single coherent multi-section course with an activelearning pedagogical approach. The overhaul also significantly impacted the course content and learning objectives. The project is now in its fifth semester and has reached a steady state where the reformed practices are normative within the subset of instructors who might be called upon to teach Calculus I. …

Injury Severity Data For Front And Second Row Passengers In Frontal Crashes, Theresa Atkinson, Leszek Gawarecki, Massoud S. Tavakoli

Mathematics Publications

The data contained here were obtained from the National Highway Transportation Safety Administration׳s National Automotive Sampling System – Crashworthiness Data System (NASS-CDS) for the years 2008–2014. This publically available data set monitors motor vehicle crashes in the United States, using a stratified random sample frame, resulting in information on approximately 5000 crashes each year that can be utilized to create national estimates for crashes. The NASS-CDS data sets document vehicle, crash, and occupant factors. These data can be utilized to examine public health, law enforcement, roadway planning, and vehicle design issues. The data provided in this brief are a subset …

Numerical And Experimental Study Of Liquid Breakup Process In Solid Rocket Motor Nozzle, Yi-Hsin Yen

Theses and Dissertations

Rocket propulsion is an important travel method for space exploration and national defense, rockets needs to be able to withstand wide range of operation environment and also stable and precise enough to carry sophisticated payload into orbit, those engineering requirement makes rocket becomes one of the state of the art industry. The rocket family have been classified into two major group of liquid and solid rocket based on the fuel phase of liquid or solid state. The solid rocket has the advantages of simple working mechanism, less maintenance and preparing procedure and higher storage safety, those characters of solid rocket …

On The Scattering Of An Acoustic Plane Wave By A Soft Prolate Spheroid, Joseph Michael Borromeo

UNLV Theses, Dissertations, Professional Papers, and Capstones

This thesis solves the scattering problem in which an acoustic plane wave of propagation number K1 is scattered by a soft prolate spheroid. The interior field of the scatterer is characterized by a propagation number K2, while the field radiated by the scatterer is characterized by the propagation number K3. The three fields and their normal derivatives satisfy boundary conditions at the surface of the scatterer. These boundary conditions involve six complex parameters depending on the propagation numbers. The scattered wave also satisfies the Sommerfeld radiation condition at infinity. Through analytical methods, series representations are constructed for the interior field …

The Eagle Programming Language, Samuel G. Horlbeck Olsen

Mathematics, Statistics, and Computer Science Honors Projects

C remains the dominant systems programming language despite many new languages attempting to take its place. Modern languages generally value abstraction and safety over speed and direct control of hardware. They are therefore not well suited to the low-level tasks for which C was designed. This paper introduces a novel programming language, Eagle, which represents a fast, elegant alternative to C. It allows low-level programming while providing optional modern features like reference counting, closures, generators, and classes. In addition to specifying this language and reviewing the current alternatives, the paper describes the implementation of a working Eagle compiler. The language …

Ogden College Of Science & Engineering Newsletter (Spring 2016), Cheryl Stevens, Dean, Ogden College Of Science & Engineering

Ogden College of Science & Engineering Publications

No abstract provided.

Off The Lip Conference - Transdisciplinary Approaches To Cognitive Innovation. Conference Proceedings, Sue Denham, Michael Punt, Edith Doove, Martha Blassnigg, Raluca Briazu, Kathryn Francis, Agi Haynes, Guy Edmonds, Adam Benjamin, Matthew Emmett, Iris Garrelfs, Christopher B. Germann, Joanna Griffin, Diane Humphrey, Bryanna Lucyk, Christie Purchase, Rachel Sansone, Emily Baxter, Amy Ione, Frank Loesche, Abigail Jackson, Alexis Kirke, Eduardo Miranda, Luke Rendell, Simon Ingram, Yutaka Nakamura, Gi Taek Ryoo, Eugenia Stamboliev, Michael Straeubig, Chun-Wei Hsu, Pinar Oztop, Mihaela Taranu, Sundar Sarukkai, James Sweeting, Minami Hirayama

Off the Lip Conference - Transdisciplinary Approaches to Cognitive Innovation

The promise of cognitive innovation as a collaborative project in the sciences, arts and humanities is that we can approach creativity as a bootstrapping cognitive process in which the energies that shape the poem are necessarily indistinguishable from those that shape the poet. For the purposes of this conference the exploration of the idea of cognitive innovation concerns an understanding of creativity that is not exclusively concerned with conscious human thought and action but also as intrinsic to our cognitive development. As a consequence, we see the possibility for cognitive innovation to provide a theoretical and practical platform from which …

Procesy Cieplne I Aparaty (Lab), Wojciech M. Budzianowski

Wojciech Budzianowski

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Geometric Deformations Of Sodalite Frameworks, Ciprian Borcea, Ileana Streinu

Computer Science: Faculty Publications

In mathematical crystallography and computational materials science, it is important to infer flexibility properties of framework materials from their geometric representation. We study combinatorial, geometric and kinematic properties for frameworks modeled on sodalite.

An Alternative Sensor Fusion Method For Object Orientation Using Low-Cost Mems Inertial Sensors, Joshua Lee Bouffard

Graduate College Dissertations and Theses

This thesis develops an alternative sensor fusion approach for object orientation using low-cost MEMS inertial sensors. The alternative approach focuses on the unique challenges of small UAVs. Such challenges include the vibrational induced noise onto the accelerometer and bias offset errors of the rate gyroscope. To overcome these challenges, a sensor fusion algorithm combines the measured data from the accelerometer and rate gyroscope to achieve a single output free from vibrational noise and bias offset errors.

One of the most prevalent sensor fusion algorithms used for orientation estimation is the Extended Kalman filter (EKF). The EKF filter performs the fusion …

Benchmark Dose Modeling With Covariates For Nanomaterials, Sarah E. Davidson

Mathematics

In the last decade, the use of engineered nanomaterials (ENMs) such as titanium dioxide (TiO2), carbon nanotubes (CNTs), carbon nanofibers (CNFs), as well as a variety of other materials have become increasingly popular in commerce because of their many beneficial properties (e.g. ability to manufacture products that are lighter, stronger, and/or more compact). However, according to the National Institute of Occupational Safety and Health, with the development of new nanotechnology it is prudent to ensure the health and safety of workers who are producing or using these materials at the forefront. For many ENMs, occupational exposure limits (OELs) are not …

Inżynieria Chemiczna Lab., Wojciech M. Budzianowski

Wojciech Budzianowski

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Combining Interval And Probabilistic Uncertainty In Engineering Applications, Andrew Martin Pownuk

Open Access Theses & Dissertations

In many practical application, we process measurement results and expert estimates. Measurements and expert estimates are never absolutely accurate, their result are slightly different from the actual (unknown) values of the corresponding quantities. It is therefore desirable to analyze how this measurement and estimation inaccuracy affects the results of data processing. There exist numerous methods for estimating the accuracy of the results of data processing under different models of measurement and estimation inaccuracies: probabilistic, interval, and fuzzy. To be useful in engineering applications, these methods should provide accurate estimate for the resulting uncertainty, should not take too much computation time, …

Risk And Safety Of Complex Network Systems, Xiao-Bing Hu, Adrian V. Gheorghe, Mark S. Leeson, Supeng Leng, Julien Bourgeois, Xiaobo Qu

Engineering Management & Systems Engineering Faculty Publications

No abstract provided.

A Hierarchical Statistical Engineering Modeling Methodology, Teddy Steven Cotter

Engineering Management & Systems Engineering Faculty Publications

In the ASEM-IAC 2015, Cotter (2015) proposed a systemic joint deterministic-stochastic dynamic causal Bayesian statistical engineering model that addressed the knowledge gap needed to integrate deterministic mathematical engineering models within a stochastic framework. However, Cotter did not specify the modeling methodology through which statistical engineering models could be developed, diagnosed, and applied to predict systemic mission performance. This paper updates research into the development a hierarchical statistical engineering modeling methodology and sets forth the initial theoretical foundation for the methodology.

Optimization Of An Agitated Extractor, Evan Zapf

Undergraduate Journal of Mathematical Modeling: One + Two

In this scenario, we use calculus to determine the optimal operating specifications of a chemical extraction process. The results are achieved by first developing an expression that yields the total annual cost of the process. Factoring in electricity, vessel, agitator, and solvent costs, an annual cost expression was fabricated. AGIEX company manufactures a certain amount of a product, A, which has an impurity that it wishes be reduced. By engineering an optimally sized vessel to perform the extraction of impurity, the company will save costs by ensuring no inefficient spending on power or excess solvent occurs. A specific amount of …