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Graduate Theses and Dissertations

Computational theory

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Contrasting Geometric Variations Of Mathematical Models Of Self-Assembling Systems, Michael Sharp Dec 2019

Contrasting Geometric Variations Of Mathematical Models Of Self-Assembling Systems, Michael Sharp

Graduate Theses and Dissertations

Self-assembly is the process by which complex systems are formed and behave due to the interactions of relatively simple units. In this thesis, we explore multiple augmentations of well known models of self-assembly to gain a better understanding of the roles that geometry and space play in their dynamics. We begin in the abstract Tile Assembly Model (aTAM) with some examples and a brief survey of previous results to provide a foundation. We then introduce the Geometric Thermodynamic Binding Network model, a model that focuses on the thermodynamic stability of its systems while utilizing geometrically rigid components (dissimilar to other …