Computer Sciences Commons^™

Data Science Applied To Discover Ancient Minoan-Indus Valley Trade Routes Implied By Commonweight Measures, Peter Revesz

CSE Conference and Workshop Papers

This paper applies data mining of weight measures to discover possible long-distance trade routes among Bronze Age civilizations from the Mediterranean area to India. As a result, a new northern route via the Black Sea is discovered between the Minoan and the Indus Valley civilizations. This discovery enhances the growing set of evidence for a strong and vibrant connection among Bronze Age civilizations.

Improving Accurate Candidates For Missing Data Using Benefit Performance Of (Ml-Som), Abeer Abdullah Al-Mohdar, Mohamed Abdullah Bamatraf

Hadhramout University Journal of Natural & Applied Sciences

Missing data is one of the major challenges in extracting and analyzing knowledge from datasets. The performance of training quality was affected by the appearance of missing data in a dataset. For this reason, there is a need for a quick and reliable method to find possible solutions in order to provide an accurate system. Therefore, the previous studies provided robust ability of Self Organizing Map (SOM) algorithm to deal with the missing values [6, 20]. However, it has a drawback such as an error rate(ERR) in the missing values that increase huge dataset. This study is mainly based on …

Applications Of Supervised Machine Learning In Autism Spectrum Disorder Research: A Review, Kayleigh K. Hyde, Marlena N. Novack, Nicholas Lahaye, Chelsea Parlett-Pelleriti, Raymond Anden, Dennis R. Dixon, Erik Linstead

Engineering Faculty Articles and Research

Autism spectrum disorder (ASD) research has yet to leverage "big data" on the same scale as other fields; however, advancements in easy, affordable data collection and analysis may soon make this a reality. Indeed, there has been a notable increase in research literature evaluating the effectiveness of machine learning for diagnosing ASD, exploring its genetic underpinnings, and designing effective interventions. This paper provides a comprehensive review of 45 papers utilizing supervised machine learning in ASD, including algorithms for classification and text analysis. The goal of the paper is to identify and describe supervised machine learning trends in ASD literature as …

Multidimensional Feature Engineering For Post-Translational Modification Prediction Problems, Norman Mapes Jr.

Doctoral Dissertations

Protein sequence data has been produced at an astounding speed. This creates an opportunity to characterize these proteins for the treatment of illness. A crucial characterization of proteins is their post translational modifications (PTM). There are 20 amino acids coded by DNA after coding (translation) nearly every protein is modified at an amino acid level. We focus on three specific PTMs. First is the bonding formed between two cysteine amino acids, thus introducing a loop to the straight chain of a protein. Second, we predict which cysteines can generally be modified (oxidized). Finally, we predict which lysine amino acids are …

The Algorithmic Composition Of Classical Music Through Data Mining, Tom Donald Richmond, Imad Rahal

All College Thesis Program, 2016-2019

The desire to teach a computer how to algorithmically compose music has been a topic in the world of computer science since the 1950’s, with roots of computer-less algorithmic composition dating back to Mozart himself. One limitation of algorithmically composing music has been the difficulty of eliminating the human intervention required to achieve a musically homogeneous composition. We attempt to remedy this issue by teaching a computer how the rules of composition differ between the six distinct eras of classical music by having it examine a dataset of musical scores, rather than explicitly telling the computer the formal rules of …

Distributed Knowledge Discovery For Diverse Data, Hossein Hamooni

Computer Science ETDs

In the era of new technologies, computer scientists deal with massive data of size hundreds of terabytes. Smart cities, social networks, health care systems, large sensor networks, etc. are constantly generating new data. It is non-trivial to extract knowledge from big datasets because traditional data mining algorithms run impractically on such big datasets. However, distributed systems have come to aid this problem while introducing new challenges in designing scalable algorithms. The transition from traditional algorithms to the ones that can be run on a distributed platform should be done carefully. Researchers should design the modern distributed algorithms based on the …

Data Mining By Grid Computing In The Search For Extrasolar Planets, Oisin Creaner [Thesis]

Doctoral

A system is presented here to provide improved precision in ensemble differential photometry. This is achieved by using the power of grid computing to analyse astronomical catalogues. This produces new catalogues of optimised pointings for each star, which maximise the number and quality of reference stars available. Astronomical phenomena such as exoplanet transits and small-scale structure within quasars may be observed by means of millimagnitude photometric variability on the timescale of minutes to hours. Because of atmospheric distortion, ground-based observations of these phenomena require the use of differential photometry whereby the target is compared with one or more reference stars. …

Novel Computational Methods For Transcript Reconstruction And Quantification Using Rna-Seq Data, Yan Huang

Theses and Dissertations--Computer Science

The advent of RNA-seq technologies provides an unprecedented opportunity to precisely profile the mRNA transcriptome of a specific cell population. It helps reveal the characteristics of the cell under the particular condition such as a disease. It is now possible to discover mRNA transcripts not cataloged in existing database, in addition to assessing the identities and quantities of the known transcripts in a given sample or cell. However, the sequence reads obtained from an RNA-seq experiment is only a short fragment of the original transcript. How to recapitulate the mRNA transcriptome from short RNA-seq reads remains a challenging problem. We …

Social Fingerprinting: Identifying Users Of Social Networks By Their Data Footprint, Denise Koessler Gosnell

Doctoral Dissertations

This research defines, models, and quantifies a new metric for social networks: the social fingerprint. Just as one's fingers leave behind a unique trace in a print, this dissertation introduces and demonstrates that the manner in which people interact with other accounts on social networks creates a unique data trail. Accurate identification of a user's social fingerprint can address the growing demand for improved techniques in unique user account analysis, computational forensics and social network analysis.

In this dissertation, we theorize, construct and test novel software and methodologies which quantify features of social network data. All approaches and methodologies are …

A Knowledge Discovery Approach For The Detection Of Power Grid State Variable Attacks, Nathan Wallace

Doctoral Dissertations

As the level of sophistication in power system technologies increases, the amount of system state parameters being recorded also increases. This data not only provides an opportunity for monitoring and diagnostics of a power system, but it also creates an environment wherein security can be maintained. Being able to extract relevant information from this pool of data is one of the key challenges still yet to be obtained in the smart grid. The potential exists for the creation of innovative power grid cybersecurity applications, which harness the information gained from advanced analytics. Such analytics can be based on the extraction …

A Novel Computational Framework For Transcriptome Analysis With Rna-Seq Data, Yin Hu

Theses and Dissertations--Computer Science

The advance of high-throughput sequencing technologies and their application on mRNA transcriptome sequencing (RNA-seq) have enabled comprehensive and unbiased profiling of the landscape of transcription in a cell. In order to address the current limitation of analyzing accuracy and scalability in transcriptome analysis, a novel computational framework has been developed on large-scale RNA-seq datasets with no dependence on transcript annotations. Directly from raw reads, a probabilistic approach is first applied to infer the best transcript fragment alignments from paired-end reads. Empowered by the identification of alternative splicing modules, this framework then performs precise and efficient differential analysis at automatically detected …

Enterprise Users And Web Search Behavior, April Ann Lewis

Masters Theses

This thesis describes analysis of user web query behavior associated with Oak Ridge National Laboratory’s (ORNL) Enterprise Search System (Hereafter, ORNL Intranet). The ORNL Intranet provides users a means to search all kinds of data stores for relevant business and research information using a single query. The Global Intranet Trends for 2010 Report suggests the biggest current obstacle for corporate intranets is “findability and Siloed content”. Intranets differ from internets in the way they create, control, and share content which can make it often difficult and sometimes impossible for users to find information. Stenmark (2006) first noted studies of corporate …