Computer Sciences Commons^™

Multihierarchical Documents And Fine-Grained Access Control, Neil Moore

Theses and Dissertations--Computer Science

This work presents new models and algorithms for creating, modifying, and controlling access to complex text. The digitization of texts opens new opportunities for preservation, access, and analysis, but at the same time raises questions regarding how to represent and collaboratively edit such texts. Two issues of particular interest are modelling the relationships of markup (annotations) in complex texts, and controlling the creation and modification of those texts. This work addresses and connects these issues, with emphasis on data modelling, algorithms, and computational complexity; and contributes new results in these areas of research.

Although hierarchical models of text and markup …

Improving Traceability Recovery Techniques Through The Study Of Tracing Methods And Analyst Behavior, Wei-Keat Kong

Theses and Dissertations--Computer Science

Developing complex software systems often involves multiple stakeholder interactions, coupled with frequent requirements changes while operating under time constraints and budget pressures. Such conditions can lead to hidden problems, manifesting when software modifications lead to unexpected software component interactions that can cause catastrophic or fatal situations. A critical step in ensuring the success of software systems is to verify that all requirements can be traced to the design, source code, test cases, and any other software artifacts generated during the software development process. The focus of this research is to improve on the trace matrix generation process and study how …

Computer Methods For Pre-Microrna Secondary Structure Prediction, Dianwei Han

Theses and Dissertations--Computer Science

This thesis presents a new algorithm to predict the pre-microRNA secondary structure. An accurate prediction of the pre-microRNA secondary structure is important in miRNA informatics. Based on a recently proposed model, nucleotide cyclic motifs (NCM), to predict RNA secondary structure, we propose and implement a Modified NCM (MNCM) model with a physics-based scoring strategy to tackle the problem of pre-microRNA folding. Our microRNAfold is implemented using a global optimal algorithm based on the bottom-up local optimal solutions.

It has been shown that studying the functions of multiple genes and predicting the secondary structure of multiple related microRNA is more important …

Efficient Greedy-Face-Greedy Geographic Routing Protocols In Mobile Ad Hoc And Sensor Networks, Yan Sun

Theses and Dissertations--Computer Science

This thesis describes and develops two planarization algorithms for geographic routing and a geographic routing protocol for mobile ad hoc and sensor networks. As all nodes are mobile and there is no fixed infrastructure, the design of routing protocols is one of the most challenging issues in mobile ad hoc and sensor networks. In recent years, greedyface- greedy (GFG) geographic routing protocols have been widely used, which need nodes to construct planar graphs as the underlying graphs for face routing.

Two kinds of planarization algorithms have been developed, idealized and realistic planarization algorithms, respectively. The idealized planarization algorithms make the …

Novel Dense Stereo Algorithms For High-Quality Depth Estimation From Images, Liang Wang

Theses and Dissertations--Computer Science

This dissertation addresses the problem of inferring scene depth information from a collection of calibrated images taken from different viewpoints via stereo matching. Although it has been heavily investigated for decades, depth from stereo remains a long-standing challenge and popular research topic for several reasons. First of all, in order to be of practical use for many real-time applications such as autonomous driving, accurate depth estimation in real-time is of great importance and one of the core challenges in stereo. Second, for applications such as 3D reconstruction and view synthesis, high-quality depth estimation is crucial to achieve photo realistic results. …