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Full-Text Articles in Computer Sciences

A Data Driven Model To Promote Preparedness And Respond Intelligently To Pandemic Outbreaks, Safea Mohammed Al Senani Nov 2022

A Data Driven Model To Promote Preparedness And Respond Intelligently To Pandemic Outbreaks, Safea Mohammed Al Senani

Theses

The COVID-19 pandemic has had a major effect on various vital sectors of the economy, including education healthcare, and the industry. Governments have imposed strict regulations to reduce the spread of this global disease outbreak. Consequently, working from home, online learning, social distancing and various control measures were enforced. In response, many schools shifted to distance learning, although most of these schools were neither technically ready nor administratively prepared for the online transition. Despite recent progress, countries are still experiencing daunting challenges to control the infection rate and magnitude, stabilize the economy, and relax socialization and public life activities. Decision-makers …


New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger Nov 2020

New Methods For Deep Learning Based Real-Valued Inter-Residue Distance Prediction, Jacob Barger

Theses

Background: Much of the recent success in protein structure prediction has been a result of accurate protein contact prediction--a binary classification problem. Dozens of methods, built from various types of machine learning and deep learning algorithms, have been published over the last two decades for predicting contacts. Recently, many groups, including Google DeepMind, have demonstrated that reformulating the problem as a multi-class classification problem is a more promising direction to pursue. As an alternative approach, we recently proposed real-valued distance predictions, formulating the problem as a regression problem. The nuances of protein 3D structures make this formulation appropriate, allowing predictions …