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Full-Text Articles in Chemistry
Long Oligodeoxynucleotides: Chemical Synthesis, Isolation Via Catching-By-Polymerization, Verification Via Sequencing, And Gene Expression Demonstration, Yipeng Yin, Reed Arneson, Alexander Apostle, Adikari M.D.N. Eriyagama, Komal Chillar, Emily Burke, Martina Jahfetson, Yinan Yuan, Shiyue Fang
Long Oligodeoxynucleotides: Chemical Synthesis, Isolation Via Catching-By-Polymerization, Verification Via Sequencing, And Gene Expression Demonstration, Yipeng Yin, Reed Arneson, Alexander Apostle, Adikari M.D.N. Eriyagama, Komal Chillar, Emily Burke, Martina Jahfetson, Yinan Yuan, Shiyue Fang
Michigan Tech Publications, Part 2
Long oligodeoxynucleotides (ODNs) are segments of DNAs having over one hundred nucleotides (nt). They are typically assembled using enzymatic methods such as PCR and ligation from shorter 20 to 60 nt ODNs produced by automated de novo chemical synthesis. While these methods have made many projects in areas such as synthetic biology and protein engineering possible, they have various drawbacks. For example, they cannot produce genes and genomes with long repeats and have difficulty to produce sequences containing stable secondary structures. Here, we report a direct de novo chemical synthesis of 400 nt ODNs, and their isolation from the complex …
Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi
Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi
Michigan Tech Publications, Part 2
Mitochondrial dysfunction is associated with various health conditions, including cardiovascular and neurodegenerative diseases. Mitochondrial-targeting therapy aims to restore or enhance mitochondrial function to treat or alleviate these conditions. Exosomes, small vesicles that cells secrete, containing a variety of biomolecules, are critical in cell-to-cell communication and have been studied as potential therapeutic agents. Exosome-based therapy has the potential to treat both cardiovascular and neurodegenerative diseases. Combining these two approaches involves using exosomes as carriers to transport mitochondrial-targeting agents to dysfunctional or damaged mitochondria within target cells. This article presents a new technique for engineering brain-derived exosomes that target mitochondria and has …
Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi
Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi
Michigan Tech Publications, Part 2
Mitochondrial dysfunction is associated with various health conditions, including cardiovascular and neurodegenerative diseases. Mitochondrial-targeting therapy aims to restore or enhance mitochondrial function to treat or alleviate these conditions. Exosomes, small vesicles that cells secrete, containing a variety of biomolecules, are critical in cell-to-cell communication and have been studied as potential therapeutic agents. Exosome-based therapy has the potential to treat both cardiovascular and neurodegenerative diseases. Combining these two approaches involves using exosomes as carriers to transport mitochondrial-targeting agents to dysfunctional or damaged mitochondria within target cells. This article presents a new technique for engineering brain-derived exosomes that target mitochondria and has …
Molecular And Physical Composition Of Tar Balls In Wildfire Smoke: An Investigation With Complementary Ionisation Methods And 15-Tesla Ft-Icr Mass Spectrometry, Amna Ijaz, William Kew, Zezhen Cheng, Susan Mathai, Nurun Nahar Lata, Libor Kovarik, Simeon Schum, Swarup China, Lynn Mazzoleni
Molecular And Physical Composition Of Tar Balls In Wildfire Smoke: An Investigation With Complementary Ionisation Methods And 15-Tesla Ft-Icr Mass Spectrometry, Amna Ijaz, William Kew, Zezhen Cheng, Susan Mathai, Nurun Nahar Lata, Libor Kovarik, Simeon Schum, Swarup China, Lynn Mazzoleni
Michigan Tech Publications, Part 2
Tar balls (TBs) are a major carbonaceous product of wildfires and other biomass-burning events that often exceed soot or other elemental forms of carbon in number and mass. Being a recalcitrant fraction of organic carbon, TBs are capable of long-range atmospheric transport, and thus, exert influence not only in the vicinity of wildfires but also in remote regions. Here, we characterised ambient atmospheric aerosol samples with varying TB number fractions collected downwind of Pacific Northwest wildfires using a 15-Tesla Fourier transform-ion cyclotron resonance mass spectrometer (15-T FT-ICR MS). Relative to non-TB aerosol, we found 2006 and 851 molecular formulae exclusively …
From Random To Rational: Improving Enzyme Design Through Electric Fields, Second Coordination Sphere Interactions, And Conformational Dynamics, Shobhit S. Chaturvedi, Daniel Bím, Christo Christov, Anastassia N. Alexandrova
From Random To Rational: Improving Enzyme Design Through Electric Fields, Second Coordination Sphere Interactions, And Conformational Dynamics, Shobhit S. Chaturvedi, Daniel Bím, Christo Christov, Anastassia N. Alexandrova
Michigan Tech Publications, Part 2
Enzymes are versatile and efficient biological catalysts that drive numerous cellular processes, motivating the development of enzyme design approaches to tailor catalysts for diverse applications. In this perspective, we investigate the unique properties of natural, evolved, and designed enzymes, recognizing their strengths and shortcomings. We highlight the challenges and limitations of current enzyme design protocols, with a particular focus on their limited consideration of long-range electrostatic and dynamic effects. We then delve deeper into the impact of the protein environment on enzyme catalysis and explore the roles of preorganized electric fields, second coordination sphere interactions, and protein dynamics for enzyme …
Biological Formation Of Ethylene, Robert P. Hausinger, Simahudeen Bathir Jaber Sathik Rifayee, Midhun George Thomas, Shramana Chatterjee, Jian Hu, Christo Christov
Biological Formation Of Ethylene, Robert P. Hausinger, Simahudeen Bathir Jaber Sathik Rifayee, Midhun George Thomas, Shramana Chatterjee, Jian Hu, Christo Christov
Michigan Tech Publications, Part 2
This review summarizes the structures, biochemical properties, and mechanisms of two major biological sources of ethylene, the ethylene-forming enzyme (EFE) and 1-aminocyclopropane-1-carboxylic acid (ACC) oxidase (ACCO). EFE is found in selected bacteria and fungi where it catalyzes two reactions: (1) the oxygen-dependent conversion of 2-oxoglutarate (2OG) to ethylene plus three molecules of CO2/bicarbonate and (2) the oxidative decarboxylation of 2OG while transforming l-arginine to guanidine and l-Δ1-pyrroline-5-carboxylic acid. ACCO is present in plants where it makes the plant hormone by transforming ACC, O2, and an external reductant to ethylene, HCN, CO2, and water. Despite catalyzing distinct chemical reactions, EFE and …
The Fierce Urgency Of Now: Integrating The Youth Voice At Cop, Gillian Bowser, Pamela H. Templer, Susie S. Ho, Sarah A. Green, Sarah Hautzinger, Isabelle Zhu-Maguire, Alyssa Connaughton, Leah Dundon, Diane Husic, Mark Urban
The Fierce Urgency Of Now: Integrating The Youth Voice At Cop, Gillian Bowser, Pamela H. Templer, Susie S. Ho, Sarah A. Green, Sarah Hautzinger, Isabelle Zhu-Maguire, Alyssa Connaughton, Leah Dundon, Diane Husic, Mark Urban
Michigan Tech Publications
No abstract provided.
Synthesis And Characterization Of Humic/Melanin-Like Compounds By Oxidative Polymerization Of Simple Aromatic Precursors, Nastaran Khademimoshgenani, Sarah A. Green
Synthesis And Characterization Of Humic/Melanin-Like Compounds By Oxidative Polymerization Of Simple Aromatic Precursors, Nastaran Khademimoshgenani, Sarah A. Green
Michigan Tech Publications
Dissolved organic matter (DOM) is a complex mixture of naturally occurring organic molecules originating from multiple marine and terrestrial sources. DOM plays a significant role in water quality by affecting the photochemistry, trace metal transport, and acidity in aquatic systems. Understanding the chemical composition of DOM helps interpret the links between its optical properties and molecular structures. Currently, the molecular origins of the optical properties of DOM are not well-defined. In this study, we oxidize and initiate the polymerization of melanin precursors 1,8-dihydroxy naphthalene and 5,6-dihydroxy indole by the addition of hydrogen peroxide and/or with ultraviolet irradiation. Our goal is …
Selectively Modified Lactose And N-Acetyllactosamine Analogs At Three Key Positions To Afford Effective Galectin-3 Ligands †, Shuay Abdullayev, Priyanka Dipak Kadav, Purnima Bandyopadhyay, Francisco Javier Medrano, Gabriel A. Rabinovich, Tarun K. Dam, Antonio Romero, René Roy
Selectively Modified Lactose And N-Acetyllactosamine Analogs At Three Key Positions To Afford Effective Galectin-3 Ligands †, Shuay Abdullayev, Priyanka Dipak Kadav, Purnima Bandyopadhyay, Francisco Javier Medrano, Gabriel A. Rabinovich, Tarun K. Dam, Antonio Romero, René Roy
Michigan Tech Publications
Galectins constitute a family of galactose-binding lectins overly expressed in the tumor microenvironment as well as in innate and adaptive immune cells, in inflammatory diseases. Lactose ((β-D-galactopyranosyl)-(1→4)-β-D-glucopyranose, Lac) and N-Acetyllactosamine (2-acetamido-2-deoxy-4-O-β-D-galactopyranosyl-D-glucopyranose, LacNAc) have been widely exploited as ligands for a wide range of galectins, sometimes with modest selectivity. Even though several chemical modifications at single positions of the sugar rings have been applied to these ligands, very few examples combined the simultaneous modifications at key positions known to increase both affinity and selectivity. We report herein combined modifications at the anomeric position, C-2, and O-3′ of each of the two …