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Full-Text Articles in Chemistry
Solution Structures Of Mycobacterium Tuberculosis Thioredoxin C And Models Of Intact Thioredoxin System Suggest New Approaches To Inhibitor And Drug Design, Andrew Lawrence Olson, Terrence S. Neumann, Sheng Cai, Daniel S. Sem
Solution Structures Of Mycobacterium Tuberculosis Thioredoxin C And Models Of Intact Thioredoxin System Suggest New Approaches To Inhibitor And Drug Design, Andrew Lawrence Olson, Terrence S. Neumann, Sheng Cai, Daniel S. Sem
Chemistry Faculty Research and Publications
Here, we report the NMR solution structures of Mycobacterium tuberculosis (M. tuberculosis) thioredoxin C in both oxidized and reduced states, with discussion of structural changes that occur in going between redox states. The NMR solution structure of the oxidized TrxC corresponds closely to that of the crystal structure, except in the C-terminal region. It appears that crystal packing effects have caused an artifactual shift in the α4 helix in the previously reported crystal structure, compared with the solution structure. On the basis of these TrxC structures, chemical shift mapping, a previously reported crystal structure of the M. tuberculosis …
Nmr Line Shapes And Multi-State Binding Equilibria, Evgeni Kovrigin
Nmr Line Shapes And Multi-State Binding Equilibria, Evgeni Kovrigin
Chemistry Faculty Research and Publications
Biological function of proteins relies on conformational transitions and binding of specific ligands. Protein-ligand interactions are thermodynamically and kinetically coupled to conformational changes in protein structures as conceptualized by the models of pre-existing equilibria and induced fit. NMR spectroscopy is particularly sensitive to complex ligand-binding modes—NMR line-shape analysis can provide for thermodynamic and kinetic constants of ligand-binding equilibria with the site-specific resolution. However, broad use of line shape analysis is hampered by complexity of NMR line shapes in multi-state systems. To facilitate interpretation of such spectral patterns, I computationally explored systems where isomerization or dimerization of a protein (receptor) molecule …
Substrate Induced Structural And Dynamics Changes In Human Phosphomevalonate Iinase And Implications For Mechanism, Andrew Lawrence Olson, Huili Yao, Timothy J. Herdendorf, Henry M. Miziorko, Supa Hannongbua, Patchareenat Saparpakom, Sheng Cai, Daniel S. Sem
Substrate Induced Structural And Dynamics Changes In Human Phosphomevalonate Iinase And Implications For Mechanism, Andrew Lawrence Olson, Huili Yao, Timothy J. Herdendorf, Henry M. Miziorko, Supa Hannongbua, Patchareenat Saparpakom, Sheng Cai, Daniel S. Sem
Chemistry Faculty Research and Publications
Phosphomevalonate kinase (PMK) catalyzes an essential step in the mevalonate pathway, which is the only pathway for synthesis of isoprenoids and steroids in humans. PMK catalyzes transfer of the γ-phosphate of ATP to mevalonate 5-phosphate (M5P) to form mevalonate 5-diphosphate. Bringing these phosphate groups in proximity to react is especially challenging, given the high negative charge density on the four phosphate groups in the active site. As such, conformational and dynamics changes needed to form the Michaelis complex are of mechanistic interest. Herein, we report the characterization of substrate induced changes (Mg-ADP, M5P, and the ternary complex) in PMK using …
13c-Methyl Isocyanide As An Nmr Probe For Cytochrome P450 Active Site, Christopher R Mccullough, Phani Kumar Pullela, Sang-Choul Im, Lucy Waskell, Daniel S. Sem
13c-Methyl Isocyanide As An Nmr Probe For Cytochrome P450 Active Site, Christopher R Mccullough, Phani Kumar Pullela, Sang-Choul Im, Lucy Waskell, Daniel S. Sem
Chemistry Faculty Research and Publications
The cytochromes P450 (CYPs) play a central role in many biologically important oxidation reactions, including the metabolism of drugs and other xenobiotic compounds. Because they are often assayed as both drug targets and anti-targets, any tools that provide: (a) confirmation of active site binding and (b) structural data, would be of great utility, especially if data could be obtained in reasonably high throughput. To this end, we have developed an analog of the promiscuous heme ligand, cyanide,with a 13CH3-reporter attached. This 13C-methyl isocyanide ligand binds to bacterial (P450cam) and membrane-bound mammalian (CYP2B4) CYPs. It can be …
Het Acid Based Oligoesters – Tga/Ftir Studies, Thangamani Rajkumar, Chinnaswamy Thangavel Vijayakumar, Palanichamy Sivasamy, Charles A. Wilkie
Het Acid Based Oligoesters – Tga/Ftir Studies, Thangamani Rajkumar, Chinnaswamy Thangavel Vijayakumar, Palanichamy Sivasamy, Charles A. Wilkie
Chemistry Faculty Research and Publications
One of the important reactive halogenated dicarboxylic acids used in the synthesis of flame retardant unsaturated polyester resins is 1,4,5,6,7,7-hexachlorobicyclo [2.2.1] hept-5-ene-2,3-dicarboxylic acid (HET acid). In the present investigation four different oligoesters are synthesized using HET acid as the diacid component and 1,2-ethane diol, 1,2-propane diol, 1,3-propane diol and 1,4-butane diol as the aliphatic diols. Melt condensation technique in vacuum is used for the synthesis of the oligoesters. The number average molecular weights of the oligoesters are determined using end group analysis. The degree of polymerization is estimated to be 3–5. The structural characterization is done using FTIR and NMR …
Mechanism Of Rate-Limiting Motions In Enzyme Function, Eric D. Watt, Hiroko Shimada, Evgueni Kovriguine, J. Patrick Loria
Mechanism Of Rate-Limiting Motions In Enzyme Function, Eric D. Watt, Hiroko Shimada, Evgueni Kovriguine, J. Patrick Loria
Chemistry Faculty Research and Publications
The ability to use conformational flexibility is a hallmark of enzyme function. Here we show that protein motions and catalytic activity in a RNase are coupled and display identical solvent isotope effects. Solution NMR relaxation experiments identify a cluster of residues, some distant from the active site, that are integral to this motion. These studies implicate a single residue, histidine-48, as the key modulator in coupling protein motion with enzyme function. Mutation of H48 to alanine results in loss of protein motion in the isotope-sensitive region of the enzyme. In addition, k cat decreases for this mutant and the kinetic …