Chemistry Commons^™

Development Of Nanodisc Affinity Capillary Electrophoresis To Study The Interaction Of Giα Protein With Cell Membranes, Bethany R. Emeigh

Graduate Student Theses, Dissertations, & Professional Papers

Guanine nucleotide-binding proteins, or G-proteins, are crucial to cell signaling by acting as molecular switches through interactions with membrane-bound receptors. G-proteins have become of greater interest due to the possibility of novel drug targets. The G-protein alpha subunit, Gα, binds GTP before localizing to the membrane to interact with other G-protein subunits and G-protein-coupled receptors (GPCRs). Gi lacks a hydrophobic region to promote localization to the membrane, but a co-translational lipidation of the N-terminal residue stabilizes this interaction.

Protein interactions with biological membranes are challenging to study due to the complex structure of membranes and the often-limited quantities of the …

Generation, Characterization, And C-H Bond Activation Reactivity By Mononuclear High-Valent Cobalt(Iv) And Nickel(Iv) Non-Oxo Complexes, Yubin Maria Kwon

Graduate Student Theses, Dissertations, & Professional Papers

The study of terminal high-valent transition metal-oxo complexes has increased significantly over the years as it is believed that they are key reactive intermediates for a wide range of biological and industrial catalytic processes. These complexes are powerful oxidants for the activation of strong C-H bonds. The chemical and physical properties of these complexes remain elusive. It is therefore desirable to study the properties and function of these complexes through synthetic models. There have been many efforts and reports of synthetic high-valent metal-oxo complexes of early and middle transition metals (up to group 8 on the Periodic Table of Elements), …

Development Of A Novel In-Situ Chemical Sampler For Aquatic Systems, Alec W. Johnson

Graduate Student Theses, Dissertations, & Professional Papers

There has been a long-standing need to study Dissolved Organic Carbon (DOC) within aquatic systems. DOC is an important water quality parameter that provides insights into ecological and carbon cycle processes in aquatic systems. DOC is not easily studied due to traditional, labor-intensive sampling methods. Often, optical (e.g. fluorescence) proxy estimations for DOC are used instead of directly sampling for DOC. Using either low frequency measurements or proxy estimations for DOC can lead to inadequate understanding of the natural processes that control DOC in aquatic systems.

This thesis outlines a in-situ sampler that will be capable of collecting, preserving, and …

Investigation Of Emissions And Chemistry Of Formic Acid And Acetic Acid In Wildfire Smoke, Catherine Elizabeth Wielgasz

Graduate Student Theses, Dissertations, & Professional Papers

Formic acid (HCOOH) and acetic acid (CH₃COOH) are two of the most ubiquitous organic acids in the atmosphere. Chemical transport models consistently underestimate HCOOH and CH₃COOH concentrations in environments including fire smoke, implying our incomplete understanding of their global budget. Emissions and secondary production of HCOOH and CH₃COOH within complex mixtures in fire smoke is uncertain.

I used measurements from the NSF/NCAR C-130 aircraft during the Western Wildfire Experiment for Cloud Chemistry, Aerosol Absorption, and Nitrogen (WE-CAN) campaign to investigate emissions and photochemical production of HCOOH and CH₃COOH from smoke plumes. First, …

Avoiding Adverse Effects: New Ideas In Drug Discovery For Targeting Pparγ, Trey M. Patton

Graduate Student Theses, Dissertations, & Professional Papers

Peroxisome proliferator-activated receptor gamma (PPARγ) has been a drug target to treat type 2 diabetes for the last 20 years when rosiglitazone and pioglitazone were approved by the FDA in 1999. While effective at increasing insulin sensitivity, these drugs cause serious adverse effects due to their full agonist characteristics. For that reason, drug discovery efforts have attempted to reduce or prevent the amount of agonist character of new PPARγ targeting ligands. Unfortunately, there have been no new FDA approved drugs for the receptor. There is a need for new ideas to produce better quality pharmaceuticals that lessen the impact of …

Xflow: An Algorithm For Extracting Ion Chromatograms, Mathew M. Gutierrez, Rob Smith

Graduate Student Theses, Dissertations, & Professional Papers

Abstract: Mass spectrometry is a fundamental tool for modern proteomics. The increasing availability of mass spectrometry data paired with the increasing sensitivity and fidelity of the instruments necessitates new and more potent analytical methods. To that end, we have created and present XFlow, a feature detection algorithm for extracting ion chromatograms from MS1 LC-MS data. XFlow is a parameter-free procedurally agnostic feature detection algorithm that utilizes the latent properties of ion chromatograms to resolve them from the surrounding noise present in MS1 data. XFlow is designed to function on either profile or centroided data across different resolutions and instruments. This …

Silicone Wristbands As Passive Samplers For Quantitative Measurement Of Wood Smoke Exposure, Hannah J. Wright

Graduate Student Theses, Dissertations, & Professional Papers

Human exposure to biomass smoke is a health concern worldwide. Although many studies have measured particulate matter in wood smoke as a health concern, exposure to mutagenic and carcinogenic volatile and semivolatile compounds remains understudied. This research introduces a novel method of quantitative measurement of exposure to these compounds using silicone wristbands. The study developed a method to extract analytes of interest from the wristbands and quantify a few volatile organic compounds and polycyclic aromatic hydrocarbons with known ill health effects, and then performed linear regressions between extracted levels and exposure to those analytes using controlled exposure studies. Results indicate …

Characterization Of Tetraethyl Orthosilicate-Based Dynamic Hydrogels For Use As Reversible 3-D Cell Culture Matrices, Krisitan Stipe

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

The Development Of A Simplified Alkalinity Titration Analyzer, Reba Van Beusekom

Graduate Student Theses, Dissertations, & Professional Papers

Alkalinity is the acid neutralizing capacity for water, meaning alkalinity measures how sensitive an aquatic system is to acidic inputs. Currently, there are various measuring systems for alkalinity available including chemical test kits, potentiometric techniques, and colorimetric methods. Commercially available products lack the ease of use combined with precision and accuracy desired for on-line process and environmental monitoring. The goal of this project is to develop a simplified alkalinity titration analyzer, called the easyTMT, to measure alkalinity with precision and accuracy comparable to the best conventional methods. The system, under development, uses the Tracer Monitored Titration (TMT) technique. TMT …

An Interdisciplinary Approach To The Target Elucidation Of Novel Antibiotic 31g12, Larissa A. Walker

Graduate Student Theses, Dissertations, & Professional Papers

Staphylococcus aureus is a Gram-positive bacterial pathogen responsible for nosocomial and community-acquired infections that can quickly acquire antibiotic resistance. We have identified a novel triazole antimicrobial 31G12 based on the natural product core of nonactin isolated from the fermentation of Streptomyces griseus, that is active against many Gram-positive bacteria as well as antibiotic resistant methicillin-resistant S. aureus and vancomycin-resistant Enterococcus. The synthesis and characterization indicate that 31G12 exists as a mixture of two rotamers at room temperature and displays bacteriostatic activity against S. aureus with moderate mammalian cell toxicity. We have currently identified potential protein targets of 31G12 in …

Evaluation Of Autonomously Measured Alkalinity, Ph, And Pco2 Variability On A Coral Reef, Brittany Peterson

Graduate Student Theses, Dissertations, & Professional Papers

Currently, our understanding of alkalinity (A_T) variability in highly dynamic environments such as coral reefs is limited by the dearth of A_T measurements. In order to better characterize these environments, high temporal resolution A_T data are needed. This work employed the newly developed Submersible Autonomous Moored Instrument for Alkalinity (SAMI-alk), a fully autonomous in situ A_T analyzer, to study seawater A_T variability. The main goals of this research were to evaluate the utility of combining the SAMI-alk data with currently available in situ measurements of pH and partial pressure of carbon dioxide (p …

A Miniaturized Spectrophotometric In Situ Ph Sensor For Seawater, Reuben C. Darlington

Graduate Student Theses, Dissertations, & Professional Papers

Since the Industrial Revolution, the world's oceans have absorbed increasing amounts of CO2 and the resultant changes to the marine carbonate chemical system have reduced the pH by > 0.1 units (~ 30%) in surface waters. This acidification of the oceans has many far reaching impacts on marine life and there is great need of quality instrumentation to assess and follow the changing carbonate system. This MIS project aims to develop a low cost pH sensor with high precision and accuracy for open sea measurements with special emphasis on reduced size and cost. Design effort is based on the commercially available …

The Biogeochemistry Of Elemental Sulfur Contaminated Soils: Insights Into Effective Remediation, Michael Ryan Mctee

Graduate Student Theses, Dissertations, & Professional Papers

Soil contamination that results from elemental sulfur (S⁰) deposition is a new occurrence. Elemental sulfur is stockpiled as a byproduct from the oil and gas industry and is deposited by biodegradable trap and skeet targets at shooting ranges. Chemolithotrophs and mixotrophs can oxidize S⁰ to H₂SO₄. Consequently, in areas where excess S⁰ is deposited or stockpiled, soils can acidify to pH values observed with acid mine drainage.

I studied S⁰ contamination at a former sporting clay range. For seven years, the range used biodegradable trap and skeet targets that contained S …

Selective Solid Phase Extraction Of Uranium Using An Aminophosphonic Acid Functionalized Composite Material, Ranalda Tsosie

Graduate Student Theses, Dissertations, & Professional Papers

Uranium is an element of interest because it is an abundant source of concentrated energy. In 1948 the US offered money for uranium ore mined in the US, which created a mining boom in the southwest that included the Navajo Reservation. During the late 1960s the demand for uranium decreased and many mining operations shutdown and left behind a legacy of contamination. As a result many Navajo communities have numerous water sources that exceed established maximum contamination levels for uranium and other toxic metals. These contaminations are a direct result of abandoned Cold War uranium mines and mill waste sites …

Characterization Of Pm2.5 From Residential Woodstove Use For Source Apportionment Application, Virginia M. Porden

Graduate Student Theses, Dissertations, & Professional Papers

Results are presented for the comparative analysis of the PM_2.5 (Particulate Matter <2.5 µm) emissions from an EPA certified and a Traditional style wood stove using western larch. A total of 92 Quartz QMA 47mm filters were collected using a BGI PM_2.5 SSC (Sharp Cut Cyclone) sampler from each stove type and analyzed on a gas chromatograph-mass spectrometer against blank and deuterated internal standards. The results were analyzed using a Welch’s t-test (α > 0.05) to statistically differentiate between stove designs for temperature, mass, levoglucosan, resin acids (abietic and dehydroabietic), and polycyclic aromatic hydrocarbons [PAH] (acenaphthene, anthracene, benz(a)anthracene, pyrene, and retene). There was no statistical difference in levoglucosan PM_2.5 mass fraction between the stove types, yielding a mean levoglucosan fraction of 9.25% and 95% confidence interval of 8.43% …

Development Of Metal-Based Luminescent Probes For Applications In Biomolecular Structure And Dynamics, Ayesha Sharmin

Graduate Student Theses, Dissertations, & Professional Papers

New transition-metal complexes containing luminescent properties have been designed and synthesized for application as structural probes for biomolecules. Potential DNA intercalators, 2- amino-anthracene substituted triosmium clusters, were synthesized by the reactions of 2-aminoanthracene with [Os3(CO)10(CH3CN)2]. The products [Os3(CO)10(μ-η2-(N-C(1))-NH2C14H8)(μ- H)], [Os3(CO)10(μ-η2-(N-C(3))-NHC14H9)(μ-H)], [Os3(CO)9(μ-η2-(N-C(3))-NHC14H8)(μ-H)2] and [Os3(CO)9(μ3-η2-(N-C(3))-NHC10H9)(μ-H)] obtained from this reaction have been structurally characterized by spectroscopic, photophysical and electrochemical techniques. Solid state structures are also reported for the complexes [Os3(CO)10(μ-η2-(N-C(3))-NHC14H9)(μ-H)] and [Os3(CO)9(μ-η2-(N-C(3))-NHC14H8)(μ-H)2]. To investigate bio-macromolecular dynamics on the sub-microsecond-to-microsecond timescale, a series of ruthenium based mono-nuclear metalligand charge-transfer complexes (MLCs) of formula [XRu(CO)(L–L)(L′)2][PF6] (X = H, TFA, Cl; L–L = 2,2′-bipyridyl, 1,10-phenanthroline, 5-amino-1,10-phenanthroline …