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Portland State University

Chemistry Faculty Publications and Presentations

Crystals -- Structure

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Full-Text Articles in Chemistry

Crystal Structures Of Dotma Chelates From Ce³+ To Yb³+ : Evidence For A Continuum Of Metal Ion Hydration States, Mark Woods, Katherine M. Payne, Edward J. Valente, Benjamin E. Kucera, Victor G. Young May 2019

Crystal Structures Of Dotma Chelates From Ce³+ To Yb³+ : Evidence For A Continuum Of Metal Ion Hydration States, Mark Woods, Katherine M. Payne, Edward J. Valente, Benjamin E. Kucera, Victor G. Young

Chemistry Faculty Publications and Presentations

The crystal structures of chelates formed between each stable paramagnetic lanthanide ion and DOTMA are described. A total of 23 individual chelates structures were obtained, in each chelate the coordination geometry around the metal ion is best described as a twisted square antiprism (torsion angle -25.0° – - 31.4°). Despite the uniformity of the general coordination geometry provided by the DOTMA ligand, there is a considerable variation in the hydration state of each chelate. The early Ln3+ chelates are associated with a single inner sphere water molecule, the Ln-OH2 interaction is remarkable for being very long. After a …


Protection Of The Queuosine Biosynthesis Enzyme Quef From Irreversible Oxidation By A Conserved Intramolecular Disulfide, Adeba Mohammad, Adriana Bon Ramos, Bobby W.K. Lee, Spencer William Cohen, Maryam K. Kiani, Dirk Iwata-Reuyl, Boguslaw Stec, Manal A. Swairjo Mar 2017

Protection Of The Queuosine Biosynthesis Enzyme Quef From Irreversible Oxidation By A Conserved Intramolecular Disulfide, Adeba Mohammad, Adriana Bon Ramos, Bobby W.K. Lee, Spencer William Cohen, Maryam K. Kiani, Dirk Iwata-Reuyl, Boguslaw Stec, Manal A. Swairjo

Chemistry Faculty Publications and Presentations

QueF enzymes catalyze the nicotinamide adenine dinucleotide phosphate (NADPH)-dependent reduction of the nitrile group of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in the biosynthetic pathway to the tRNA modified nucleoside queuosine. The QueF-catalyzed reaction includes formation of a covalent thioimide intermediate with a conserved active site cysteine that is prone to oxidation in vivo. Here, we report the crystal structure of a mutant of Bacillus subtilis QueF, which reveals an unanticipated intramolecular disulfide formed between the catalytic Cys55 and a conserved Cys99 located near the active site. This structure is more symmetric than the substrate-bound structure and exhibits major rearrangement of …


Antibacterial Targets In Fatty Acid Biosynthesis, H. Tonie Wright, Kevin A. Reynolds Jan 2007

Antibacterial Targets In Fatty Acid Biosynthesis, H. Tonie Wright, Kevin A. Reynolds

Chemistry Faculty Publications and Presentations

The fatty acid biosynthesis pathway is an attractive but still largely unexploited target for development of new anti-bacterial agents. The extended use of the anti-tuberculosis drug isoniazid and the antiseptic triclosan, which are inhibitors of fatty acid biosynthesis, validates this pathway as a target for anti-bacterial development. Differences in subcellular organization of the bacterial and eukaryotic multi-enzyme fatty acid synthase systems offer the prospect of inhibitors with host vs. target specificity. Platensimycin, platencin, and phomallenic acids, newly discovered natural product inhibitors of the condensation steps in fatty acid biosynthesis, represent new classes of compounds with antibiotic potential. An almost complete …


Probing Reactivity And Substrate Specificity Of Both Subunits Of The Dimeric Mycobacterium Tuberculosis Fabh Using Alkyl-Coa Disulfide Inhibitors And Acyl-Coa Substrates, Sarbjot Sachdeva, Faik Musayev, Mamoun M. Alhamadsheh, J. Neel Scarsdale, H. Tonie Wright, Kevin A. Reynolds Jan 2007

Probing Reactivity And Substrate Specificity Of Both Subunits Of The Dimeric Mycobacterium Tuberculosis Fabh Using Alkyl-Coa Disulfide Inhibitors And Acyl-Coa Substrates, Sarbjot Sachdeva, Faik Musayev, Mamoun M. Alhamadsheh, J. Neel Scarsdale, H. Tonie Wright, Kevin A. Reynolds

Chemistry Faculty Publications and Presentations

The dimeric Mycobacterium tuberculosis FabH (mtFabH) catalyses a Claisen-type condensation between an acyl-CoA and malonyl-acyl carrier protein (ACP) to initiate the Type II fatty acid synthase cycle. To analyze the initial covalent acylation of mtFabH with acyl-CoA, we challenged it with mixture of C6-C20 acyl-CoAs and the ESI-MS analysis showed reaction at both subunits and a strict specificity for C12 acyl CoA. Crystallographic and ESI-MS studies of mtFabH with a decyl-CoA disulfide inhibitor revealed a decyl chain bound in acyl-binding channels of both subunits through disulfide linkage to the active site cysteine. These data provide the first unequivocal evidence that …


Bis(1h+-Pyrazinium N4-Oxide) Dichromate, Gary L. Gard, Roger D. Willett, W. W. Paudler, R. M. Sheets, Mark R. Pressprich Sep 1990

Bis(1h+-Pyrazinium N4-Oxide) Dichromate, Gary L. Gard, Roger D. Willett, W. W. Paudler, R. M. Sheets, Mark R. Pressprich

Chemistry Faculty Publications and Presentations

2C₄H₅N₂O⁺.Cr₂O²₇⁻, Mᵣ=410∙2, monoclinic, P2₁, a=8∙(2), b=6∙132 (2), c=14∙493 (4) Å, β=94∙50 (2)°, V=708∙8 (3) ų, Z=2, Dₓ=1∙92 g cm⁻³, Mο Κα, λ=0∙71069 Å, μ=15∙5 cm⁻¹, F(000)=412, T=293 K, R=0∙0602 for 1980 unique observed reflections with F≥3σ(F). The structure consists of discrete dinegative dichromate anions hydrogen bonded to monopositive pyrazinium N-oxide cations (N―H∙∙∙O=2∙724, 2∙644 Å). A strong hydrogen bond to the bridging O atom in the Cr₂O²₇⁻ anion leads to significant lengthening of the bridging Cr―O bonds. A short C―H∙∙∙O interaction (3∙180 Å) is also observed.