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Full-Text Articles in Applied Mathematics
Dna Complexes Of One Bond-Edge Type, Andrew Tyler Lavengood-Ryan
Dna Complexes Of One Bond-Edge Type, Andrew Tyler Lavengood-Ryan
Electronic Theses, Projects, and Dissertations
DNA self-assembly is an important tool used in the building of nanostructures and targeted virotherapies. We use tools from graph theory and number theory to encode the biological process of DNA self-assembly. The principal component of this process is to examine collections of branched junction molecules, called pots, and study the types of structures that such pots can realize. In this thesis, we restrict our attention to pots which contain identical cohesive-ends, or a single bond-edge type, and we demonstrate the types and sizes of structures that can be built based on a single characteristic of the pot that is …
Phylogenetic Networks And Functions That Relate Them, Drew Scalzo
Phylogenetic Networks And Functions That Relate Them, Drew Scalzo
Williams Honors College, Honors Research Projects
Phylogenetic Networks are defined to be simple connected graphs with exactly n labeled nodes of degree one, called leaves, and where all other unlabeled nodes have a degree of at least three. These structures assist us with analyzing ancestral history, and its close relative - phylogenetic trees - garner the same visualization, but without the graph being forced to be connected. In this paper, we examine the various characteristics of Phylogenetic Networks and functions that take these networks as inputs, and convert them to more complex or simpler structures. Furthermore, we look at the nature of functions as they relate …