Physical Sciences and Mathematics Commons^™

Potentially Massive And Global Non-Pyrogenic Production Of Condensed "Black" Carbon Through Biomass Oxidation, Aleksandar I. Goranov, Hongmei Chen, Jianshu Duan, Satish C. B. Myneni, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

With the increased occurrences of wildfires worldwide, there has been an increase in scientific interest surrounding the chemistry of fire-derived "black" carbon (BC). Traditionally, wildfire research has assumed that condensed aromatic carbon (ConAC) is exclusively produced via combustion, and thus, ConAC is equated to BC. However, the lack of correlations between ConAC in soils or rivers and wildfire history suggests that ConAC may be produced non-pyrogenically. Here, we show quantitative evidence that this occurs during the oxidation of biomass with environmentally ubiquitous hydroxyl radicals. Pine wood boards exposed to iron nails and natural weather conditions for 12 years yielded a …

Advances And Perspectives Of Using Stable Isotope Probing (Sip)-Based Technologies In Contaminant Biodegradation, Jinha Kim, Myung Hwangbo, Chih-Hsuan Shih, Kung-Hui Chu

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

• Advances of SIP-based techniques/applications are comprehensively reviewed.

• Varying stable isotopes types/numbers/ positions reinforce biodegradation studies.

• SIP identifies microbes capable of co-metabolic degradation of contaminants.

• Single-cell SIP.and qSIP are promising to overcome cross-feeding effects.

Abstract

Stable isotope probing (SIP) is a powerful tool to study microbial community structure and function in both nature and engineered environments. Coupling with advanced genomics and other techniques, SIP studies have generated substantial information to allow researchers to draw a clearer picture of what is occurring in complex microbial ecosystems. This review provides an overview of the advances of SIP-based technologies over time, summarizes the …

Advances And Perspectives Of Using Stable Isotope Probing (Sip)-Based Technologies In Contaminant Biodegradation, Jinha Kim, Myung Hwangbo, Chih-Hsuan Shih, Kung-Hui Chu

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Stable isotope probing (SIP) is a powerful tool to study microbial community structure and function in both nature and engineered environments. Coupling with advanced genomics and other techniques, SIP studies have generated substantial information to allow researchers to draw a clearer picture of what is occurring in complex microbial ecosystems. This review provides an overview of the advances of SIP-based technologies over time, summarizes the status of SIP applications to contaminant biodegradation, provides critical perspectives on ecological interactions within the community, and important factors (controllable and non-controllable) to be considered in SIP experimental designs and data interpretation. Current trend and …

Effect Of Okra Bast Fillers On Biodegradation Properties Of Poly(Vinyl Alcohol) Composites, Gazi Md Arifuzzaman Khan, Nazi̇re Deni̇z Yilmaz

Turkish Journal of Chemistry

This paper focuses on the effect of okra bast fillers on biodegradation of poly(vinyl alcohol) composites. Fibers were obtained from okra plant stems via biological degumming and subjected to different chemical treatments such as scouring, alkalizing, maleic anhydride treatment, and vinyl acetate grafting. The fibers were ground and PVA-okra bast filler composites were produced at 20 wt% fiber load via the solution casting method. The obtained composites were tested in terms of mechanical properties and exposed to biodegradation in soil. Effects of okra bast filler addition and chemical treatments on changes in mass, breaking strength, elasticity modulus, and breaking elongation …

Electrospun Poly(3-Hydroxybutyrate-Co-3-Hydroxyvalerate)/Olive Leaf Extract Fiber Mesh As Prospective Bio-Based Scaffold For Wound Healing, Jose Gustavo De La Ossa, Serena Danti, Jasmine Esposito Salsano, Bahareh Azimi, Veronika Tempesti, Niccoletta Barbani, Maria Digiacomo, Marco Macchia, Mohammed Jasim Uddin, Caterina Cristallini

Chemistry Faculty Publications and Presentations

Polyhydroxyalkanoates (PHAs) are a family of biopolyesters synthesized by various microorganisms. Due to their biocompatibility and biodegradation, PHAs have been proposed for biomedical applications, including tissue engineering scaffolds. Olive leaf extract (OLE) can be obtained from agri-food biowaste and is a source of polyphenols with remarkable antioxidant properties. This study aimed at incorporating OLE inside poly(hydroxybutyrate-co-hydroxyvalerate) (PHBHV) fibers via electrospinning to obtain bioactive bio-based blends that are useful in wound healing. PHBHV/OLE electrospun fibers with a size of 1.29 ± 0.34 µm were obtained. Fourier transform infrared chemical analysis showed a uniform surface distribution of hydrophilic -OH groups, confirming the …

Application Of A 14c-Assay To Assess Methanotrophic Biodegradation Of Tce In Low Ph Groundwater, Evan Groome

All Theses

Current biological strategies for remediating trichloroethylene (TCE) in low pH aquifers (i.e., pH14C-TCE assay was developed to determine pseudo first-order rate constants for the degradation of TCE in microcosms containing soil and groundwater from the Boeing Michigan Aeronautical Research Center (BOMARC) superfund site, where the pH ranges from 4.1 to 4.9. The ¹⁴C-TCE assay was also adapted to calculate soil-normalized rate constants for data from this site, as well as data that Szwast²¹ collected from the Beltsville Agricultural Research Center (BARC). In addition to natural attenuation, biostimulation through amendments of methane and nutrients were also assessed. This treatment …

Biomass Estimation Of Marine Biofilms On Plastic Surfaces, Kian Banihashemi, Fernando Javier Gil

Biological Sciences

Plastics have become a major source of marine pollution, which threatens food safety and quality, human health, and marine ecosystems. Due to the drastic negative effects of plastics in a marine environment, alternative biodegradable plastics are being generated that are more eco-friendly and have less environmental impact. Though some of these plastics are known to biodegrade, the process of degradation for bioplastics has not been heavily studied in a marine environment. This pilot project sought to both quantify the process of biodegradation and compare across different methods for effectiveness of biomass estimation, which serves as an indicator of biodegradation. Plastics …

Microbial Labilization And Diversification Of Pyrogenic Dissolved Organic Matter, Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

With the increased occurrence of wildfires around the world, interest in the chemistry of pyrogenic organic matter (pyOM) and its fate in the environment has increased. Upon leaching from soils by rain events, significant amounts of dissolved pyOM (pyDOM) enter the aquatic environment and interact with microbial communities that are essential for cycling organic matter within the different biogeochemical cycles. To evaluate the biodegradability of pyDOM, aqueous extracts of laboratory-produced biochars were incubated with soil microbes, and the molecular changes to the composition of pyDOM were probed using ultrahigh-resolution mass spectrometry (Fourier transform–ion cyclotron resonance–mass spectrometry). Given that solar irradiation …

Bioplastics In The Consumer Market, Elena Strom

Master of Science in Environmental Sciences and Management Projects

The global production and mismanagement of plastic has led to plastics deposited and scatted across marine environments. Conventional plastic, which most Americans encounter every day, is produced from fossil fuels and lacks the ability to fully break down upon disposal, breaking down into microplastics that can remain in the natural environment for hundreds of years. Moving away from petroleum-based plastics could lead to a reduction in greenhouse gas emissions and decrease plastic particles in the ocean. Based on existing literature, there are three biopolymers that could serve as replacements to conventional plastics in the marketplace. These biopolymers are seen as …

Arsenic In Petroleum-Contaminated Groundwater Near Bemidji, Minnesota Is Predicted To Persist For Centuries, Brady A. Ziegler, G. H. Crystal Ng, I. M. Cozzarelli, A. J. Dunshee, M. E. Schreiber

Geosciences Faculty Research

We used a reactive transport model to investigate the cycling of geogenic arsenic (As) in a petroleum-contaminated aquifer. We simulated As mobilization and sequestration using surface complexation reactions with Fe(OH)₃ during petroleum biodegradation coupled with Fe-reduction. Model results predict that dissolved As in the plume will exceed the U.S. and EU 10 µg/L drinking water standard for ~400 years. Non-volatile dissolved organic carbon (NVDOC) in the model promotes As mobilization by exerting oxygen demand, which maintains anoxic conditions in the aquifer. After NVDOC degrades, As re-associates with Fe(OH)₃ as oxygenated conditions are reestablished. Over the 400-year simulation, As …

Biolability Of Fresh And Photodegraded Pyrogenic Dissolved Organic Matter From Laboratory-Prepared Chars, K. W. Bostick, A. R. Zimmerman, A. I. Goranov, S. Mitra, P. G. Hatcher, A. S. Wozniak

Chemistry & Biochemistry Faculty Publications

Pyrogenic dissolved organic matter (pyDOM) is known to be an important biogeochemical constituent of aquatic ecosystems and the carbon cycle. While recent studies have examined how pyDOM production, composition, and photolability varies with parent pyrogenic solid material type, we lack an understanding of potential microbial mineralization and transformation of pyDOM in the biogeosphere. Thus, leachates of oak, charred at 400 °C and 650 °C, as well as their photodegraded counterparts were incubated with a soil‐extracted microbial consortium over 96 days. During the incubation, significantly more carbon was biomineralized from the lower versus higher temperature char leachate (45% vs. 37% lost, …

Applications Of Mass Spectrometry To Forensic Entomology : Calliphoridae Species Determination, Monitoring Of Decomposition Volatiles, And Discovery Of Chemical Cues, Justine Elizabeth Giffen-Lemieux

Legacy Theses & Dissertations (2009 - 2024)

Forensic entomology is the study of insects that colonize human/animal wounds and remains and their development for use in legal contexts. It has numerous facets and applications including: estimation of time since death; investigation of neglect/abuse of children and the elderly; and determination of the presence of toxins and drugs as a potential cause of death. In order for the discovered insects to be of forensic utility, accurate species identification is crucial. Current methodologies for species determination rely on the knowledge and expertise of an entomologist; exhaustive taxonomic keys; and access to adequate equipment and facilities; resources which are often …

Biodegradation Of Phenol By Klebsiellaoxytocaisolated From Oil Contaminated Environments, Noor Mohammad Ali, Aamal Ghazi Mahdi Al-Saadi

Al-Qadisiyah Journal of Pure Science

The degradation of phenol by microorganisms in the soil is an important method through which these materials are removed from the environment, thus reducing environmental pollution. Biodegradation by bacterial species provides unique opportunities to destroy or convert phenolic compounds into other less toxic compounds. In this study, two Klebsiella oxytoca isolates were selected from petroleum contaminated soils using mineral salts medium supporting with phenol as the only carbon source.The isolates were identified by microscopic, morphological, and biochemical approaches, and their capabilities of biodegrading phenol were analyzed by 4-aminoantipyrine assay. The results showed that the selected Klebsiella oxytoca isolates were able …

Study On The Biodegradation Of Guanidine Gum By Methanogens In Coal Seam, Li Yunsong, Guo Hongyu, Fu Chaoyong, Zhao Guojun, Xia Daping

Coal Geology & Exploration

The problem of low temperature breaking of guanidine gum fracturing fluid is related to the effect of coal seam penetration. In order to explore the effect of methanogenson the biodegradation of guanidine gum, Inner Mongolia some coal mine lignite were collected to prepare samples of coal samples, and the enriched fresh mine water was used as the bacteria source. The biological methane metabolism experiments of guanidine gum + coal were used to characterize the biodegradability of methanogens to guanidine gum, with the total gas production, CH₄ concentration, guanidine gum molecular functional groups and C and H elements content changes. …

Methods To Improve The Remediation Of Polycyclic Aromatic Hydrocarbons (Pahs) In Aerobic And Anaerobic Environments, Brian Wartell

Dissertations

Oil spills occur regularly in terrestrial environments and crude oil can contain many compounds that are highly resistant to degradation. Among these compounds are high levels of polycyclic aromatic hydrocarbons (PAHs) which are not only toxic but can also be carcinogenic and/or mutagenic. The first chapter of this dissertation includes an extensive review chapter on the variables affecting the anaerobic degradation of hydrocarbons, with a particular focus on PAHs. Electron acceptors, electron donors, temperature, salinity, pH all play key roles in determining the possibility effective of effective degradation occurring. Thus, by addressing solutions, such as biostimulation, improving environmental variables for …

Ms Analysis Of A Dilution Series Of Bacteria: Phytoplankton To Improve Detection Of Low Abundance Bacterial Peptides, Emma Timmins-Schiffman, Molly P. Mikan, Ying Sonia Ting, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. …

Message In A Bottle: The Expression And Confirmation Of Isf6_4831, A Polyethylene Terephthalate Hydrolase, Nathan A. Koconis

Graduate Theses

Polyethylene terephthalate (PET), the polyester used to make plastic bottles for soft drinks, is one of the top five sources of plastic waste in the world. Its abundance represents significant problems for municipalities and environments. Recycling PET polymers by traditional methods is possible, but success has been limited due to poor compliance, liability, cost, and other factors. Fortunately, a PET degradation pathway has been identified in Ideonella sakaiensis. Research on this pathway is still nascent and has not yet explored the PET hydrolase gene (ISF6_4831, or PETase) with its leading signal peptide intact. For this reason, the gene was transferred …

Significance Of A Non-Thermal Plasma Treatment On Ldpe Biodegradation With Pseudomonas Aeruginosa, Laurence Scally, Miroslav Gulan, Lars Weigang, Patrick Cullen, Vladimir Milosavljević

Articles

The use of plastics has spanned across almost all aspects of day to day life. Although their uses are invaluable, they contribute to the generation of a lot of waste products that end up in the environment and end up polluting natural habitats such as forests and the ocean. By treating low-density polyethylene (LDPE) samples with non-thermal plasma in ambient air and with an addition of ≈4% CO2, the biodegradation of the samples can be increased due to an increase in oxidative species causing better cell adhesion and acceptance on the polymer sample surface. It was, however, found that the …

Probiotic Strain Stenotrophomonas Acidaminiphila Bj1 Degrades And Reduces Chlorothalonil Toxicity To Soil Enzymes, Microbial Communities And Plant Roots, Qingming Zhang, Muhammad Saleem, Caixia Wang

Plant and Soil Sciences Faculty Publications

Chlorothalonil, a non-systemic and broad-spectrum fungicide, is widely used to control the pathogens of agricultural plants. Although microbial degradation of chlorothalonil is known, we know little about the colonization and degradation capacity of these microbes in the natural and semi-natural soil environments. Therefore, we studied the colonization and detoxification potential of a chlorothalonil degrading Stenotrophomonas acidaminiphila probiotic strain BJ1 in the soil under green conditions. The results from polymerase chain reaction-denaturing gradient gel electrophoresis demonstrated that probiotic strain BJ1 successfully colonized the soil by competing with the native biota. Moreover, the bacterial inoculation stimulated some members of indigenous soil microbial …

Detection And Analysis Of Polyurethane Biodegradation Due To Cryptococcus Laurentii, Tyler Jacob Zicht

Browse all Theses and Dissertations

Current United States aircraft are equipped with a multitude of protective coatings on the interior and exterior of the vehicle, ultimately enhancing their ability to ensure a safe and effective mission. Aircraft, over the course of their lifetime, will experience impact, corrosion, weathering, and microbial damage to its defensive structures, rendering it vulnerable to attacks. Damaged coatings are then repaired on the aircraft once detected in inspection or replaced in accordance to the lifecycle of the material on the aircraft. However potentially harmful threats such as bacteria are not considered by the Air Force to be dangerous. Therefore, the purpose …

Dissolved Nutrient Distributions In The Gulf Of Mexico Following The Deepwater Horizon Oil Spill, Ashley Ann Parks

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon (DWH) oil spill in the Gulf of Mexico (GoM) in the spring of 2010 introduced 4.4 million of barrels of oil to the ecosystem. Some biodegradation of the oil occurs when microorganisms, particularly bacteria, metabolize the oil as a carbon source. During this process, the microbes also require nutrients for energy. An introduction of oil at this magnitude has the ability to induce large blooms of microbes, which in turn can affect nutrient concentrations. Microbial petroleum degradation decreases nutrient concentrations, whereas the microbial assimilation and decay of organic matter increase nutrient concentrations. This study assessed whether any …

Enhancing Biodegredation Of Herbicides Using Biobed Systems, B. Chu, Frieda Eivazi

21st International Conference on Environmental Indicators (ICEI 2015)

No abstract provided.

Sustainable Decolorization Of Reactive And Acid Dye Wastewater Using Photo-Fenton Oxidation Both With And Without Biodegradation: Laboratory And Field Studies, Marissa R. Jablonski

Theses and Dissertations

Photo-Fenton oxidation is an advanced oxidation process (AOP) used to degrade low-concentration textile dye wastewater using expensive chemicals. The technique has shown promise in laboratory-scale projects, but has not been scaled up sustainably to function for industry. Aerobic biodegradation is a common biological treatment method used in large-scale textile industrial applications that generates large amounts of hazardous biological waste. This waste is often left open to the elements and subsequently leaches into natural waterways or onto land. This is the first study of its kind to combine the two to treat cottage-scale industry-grade textile wastewater with a dye concentration of …

Electrical Resistivity Imaging For Long-Term Autonomous Monitoring Of Hydrocarbon Degradation: Lessons From The Deepwater Horizon Oil Spill, Jeffrey W. Heenan, Lee D. Slater, Dimitrios Ntarlagiannis, Estella A. Atekwana, Babu Z. Fathepure, Sonal Dalvi, Cameron Ross, D. Dale Werkema, Eliot A. Atekwana

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Conceptual models for the geophysical responses associated with hydrocarbon degradation suggest that the long-term evolution of an oil plume will result in a more conductive anomaly than the initial contamination. In response to the Deepwater Horizon (DH) oil spill into the Gulf of Mexico in 2010, an autonomous resistivity monitoring system was deployed on Grand Terre, Louisiana, in an attempt to monitor natural degradation processes in hydrocarbon-impacted beach sediments of this island. A 48-electrode surface array with a 0.5-m spacing was installed to obtain twice-daily images of the resistivity structure of the shallow subsurface impacted by oil. Over the course …

Analysis, Toxicity, Occurrence And Biodegradation Of Nonylphenol Isomers: A Review, Zhijiang Lu, Jay Gan

Environmental Science and Geology Faculty Research Publications

Over the last two decades, nonylphenols (NPs) have become to be known as a priority hazardous substance due primarily to its estrogenicity and ubiquitous occurrence in the environment. Nonylphenols are commonly treated as a single compound in the evaluation of their environmental occurrence, fate and transport, treatment or toxicity. However, technical nonylphenols (tNPs) are in fact a mixture of more than 100 isomers and congeners. Recent studies showed that some of these isomers behaved significantly differently in occurrence, estrogenicity and biodegradability. The most estrogenic isomer was about 2 to 4 times more active than tNP. Moreover, the half lives of …

The Occurrence, Fate, Environmental Impact, And Management Implications Of Pharmaceutical And Personal Care Products In Wastewater And The Environment, Benjamin Donald Blair

Theses and Dissertations

Pharmaceuticals and personal care products (PPCPs) are a critical part of modern life. However, there is growing evidence that the levels of PPCPs detected in wastewater effluent and in the environment have the potential to cause damage to aquatic organisms. These pollutants enter the aquatic environment primarily through human use, disposal in the drain or toilet, land application of biosolids, and veterinary sources. Numerous questions remain regarding the occurrence, fate, and impacts of PPCPs in wastewater, along with limited feasible management recommendations that would adequately mitigate the risk from these pollutants. This dissertation will present three advances in the field …

Spectral Induced Polarization (Sip) Response Of Biodegraded Oil In Porous Media, Gamal Z. Abdel Aal, Estella A. Atekwana

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Laboratory experiments were conducted to investigate the effect of different oil saturation (0.2- 0.8), wetting conditions (water-wet and oil-wet), and the addition of asphaltene on the spectral induced polarization (SIP) response of biodegraded and fresh crude oil in sand columns. In the water-wet case, no significant differences were observed for both the fresh and biodegraded oil and both displayed an increase in the magnitude of the phase (φ) and decrease in the magnitudes of the real (σ′) and imaginary (σ″) conductivity components with increasing oil saturation. In this instance the SIP response is most likely controlled by the conduction and …

Control Of Biodegradation Of A Mg Alloy In Simulated Body Fluid, Yafei Zhang, Maria Forsyth, Bruce Hinton, Gordon G. Wallace

Gordon Wallace

Mg alloy AZ31 is an attractive candidate for coronary artery stents, as it possesses excellent biocompatibility in human body and good mechanical properties. However, AZ31 magnesium alloys generally have poor corrosion resistance in the body environment. This paper reports on the early stages of an investigation into the corrosion mechanism and the morphology of corrosion of AZ31 in simulated body fluid (SBF), The investigation will also consider ways of improving corrosion resistance of this alloy in SBF through the use of ionic liquids. The results to date have shown that AZ31 suffers severe localized pitting corrosion in SBF. The pits …

Natural Treatment Systems As Sustainable Ecotechnologies For The Developing Countries, Qaisar Mahmood, Arshid Pervez, Bibi Saima Zeb, Habiba Zaffar, Hajra Yaqoob, Muhammad Waseem, Zahidullah, Sumera Afsheen

Plant and Soil Sciences Faculty Publications

The purpose of natural treatment systems is the re-establishment of disturbed ecosystems and their sustainability for benefits to human and nature. The working of natural treatment systems on ecological principles and their sustainability in terms of low cost, low energy consumption, and low mechanical technology is highly desirable. The current review presents pros and cons of the natural treatment systems, their performance, and recent developments to use them in the treatment of various types of wastewaters. Fast population growth and economic pressure in some developing countries compel the implementation of principles of natural treatment to protect natural environment. The employment …

Biodegradation Of Textile Dye Anthraquinone Vat Blue 4 By Pseudomonas Aeruginosa, Rajee Olaganathan, Jamila Patterson

Publications

Uncontaminated and Vat blue 4 contaminated soil were screened for heterotrophic bacterial population and the bacterial density were found to be 19.3 X 104 and 5.5 X 104 CFU/gm respectively. The bacterial genera of dye contaminated soil was dominated by Pseudomonas sp. (32.5 %) followed by Bacillus sp. (27.5 %), Aeromonas sp. (15.0 %), Micrococcus sp. (12.5 %) and Achromobacter sp. (12.5 %). The optimum inoculums load, pH and temperature were found to be 5%, 7 and 35oC respectively. The initial pH of the effluent prepared using Vat Blue 4 was 8.5. The free cells of P. aeruginosa reduced the …