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2015

Iowa State University

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Articles 1 - 18 of 18

Full-Text Articles in Physical Sciences and Mathematics

Projected Nesterov’S Proximal-Gradient Signal Recovery From Compressive Poisson Measurements, Renliang Gu, Aleksandar Dogandžić Nov 2015

Projected Nesterov’S Proximal-Gradient Signal Recovery From Compressive Poisson Measurements, Renliang Gu, Aleksandar Dogandžić

Aleksandar Dogandžić

We develop a projected Nesterov’s proximal-gradient (PNPG) scheme for reconstructing sparse signals from compressive Poisson-distributed measurements with the mean signal intensity that follows an affine model with known intercept. The objective function to be minimized is a sum of convex data fidelity (negative log-likelihood (NLL)) and regularization terms. We apply sparse signal regularization where the signal belongs to a nonempty closed convex set within the domain of the NLL and signal sparsity is imposed using total-variation (TV) penalty. We present analytical upper bounds on the regularization tuning constant. The proposed PNPG method employs projected Nesterov’s acceleration step, function restart, and …

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Century-Scale Patterns And Trends Of Global Pyrogenic Carbon Emissions And Fire Influences On Terrestrial Carbon Balance, Jia Yang, Hanqin Tian, Bo Tao, Wei Ren, Chaoqun (Crystal) Lu, Shufen Pan, Yuhang Wang, Yongqiang Liu Sep 2015

Century-Scale Patterns And Trends Of Global Pyrogenic Carbon Emissions And Fire Influences On Terrestrial Carbon Balance, Jia Yang, Hanqin Tian, Bo Tao, Wei Ren, Chaoqun (Crystal) Lu, Shufen Pan, Yuhang Wang, Yongqiang Liu

Chaoqun (Crystal) Lu

Fires have consumed a large amount of terrestrial organic carbon and significantly influenced terrestrial ecosystems and the physical climate system over the past century. Although biomass burning has been widely investigated at a global level in recent decades via satellite observations, less work has been conducted to examine the century-scale changes in global fire regimes and fire influences on the terrestrial carbon balance. In this study, we investigated global pyrogenic carbon emissions and fire influences on the terrestrial carbon fluxes from 1901 to 2010 by using a process-based land ecosystem model. Our results show a significant declining trend in global …

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Disentangling Climatic And Anthropogenic Controls On Global Terrestrial Evapotranspiration Trends, Jiafu Mao, Wenting Fu, Xiaoying Shi, Daniel M. Ricciuto, Joshua B. Fisher, Robert E. Dickinson, Yaxing Wei, Willis Shem, Shilong Piao, Kaicun Wang, Christopher R. Schwalm, Hanqin Tian, Mingquan Mu, Altaf Arain, Philippe Ciais, Robert Cook, Yongdiu Dai, Daniel Hayes, Forrest M. Hoffman, Maoyi Huang, Suo Huang, Deborah N. Huntzinger, Akihiko Ito, Atul Jain, Anthony W. King, Huimin Lei, Chaoqun (Crystal) Lu, Huimin Lei, Anna M. Michalak, Changhui Peng, Shushi Peng, Benjamin Poulter, Kevin Schaefer, Elshin Jafarov, Peter E. Thornton, Weile Wang, Ning Zeng, Zhenzhong Zeng, Fang Zhao, Qiuan Zhu, Zaichun Zhu Sep 2015

Disentangling Climatic And Anthropogenic Controls On Global Terrestrial Evapotranspiration Trends, Jiafu Mao, Wenting Fu, Xiaoying Shi, Daniel M. Ricciuto, Joshua B. Fisher, Robert E. Dickinson, Yaxing Wei, Willis Shem, Shilong Piao, Kaicun Wang, Christopher R. Schwalm, Hanqin Tian, Mingquan Mu, Altaf Arain, Philippe Ciais, Robert Cook, Yongdiu Dai, Daniel Hayes, Forrest M. Hoffman, Maoyi Huang, Suo Huang, Deborah N. Huntzinger, Akihiko Ito, Atul Jain, Anthony W. King, Huimin Lei, Chaoqun (Crystal) Lu, Huimin Lei, Anna M. Michalak, Changhui Peng, Shushi Peng, Benjamin Poulter, Kevin Schaefer, Elshin Jafarov, Peter E. Thornton, Weile Wang, Ning Zeng, Zhenzhong Zeng, Fang Zhao, Qiuan Zhu, Zaichun Zhu

Chaoqun (Crystal) Lu

We examined natural and anthropogenic controls on terrestrial evapotranspiration (ET) changes from 1982 to 2010 using multiple estimates from remote sensing-based datasets and process-oriented land surface models.A significant increasing trend of ET in each hemisphere was consistently revealed by observationally-constrained data and multi-model ensembles that considered historic natural and anthropogenic drivers. The climate impacts were simulated to determine the spatiotemporal variations in ET. Globally, risingCO2 ranked second in these models after the predominant climatic influences, and yielded decreasing trends in canopy transpiration and ET, especially for tropical forests and high-latitude shrub land. Increasing nitrogen deposition slightly amplified global ET via …

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Climate Extremes Dominating Seasonal And Interannual Variations In Carbon Export From The Mississippi River Basin, Hanqin Tian, Wei Ren, Jia Yang, Bo Tao, Wei-Jun Cai, Steve E. Lohrenz, Charles S. Hopkinson, Mingliang Liu, Qichun Yang, Chaoqun (Crystal) Lu, Bowen Zhang, Kamaljit Banger, Shufen Pan, Ruoying He, Zuo Xue Sep 2015

Climate Extremes Dominating Seasonal And Interannual Variations In Carbon Export From The Mississippi River Basin, Hanqin Tian, Wei Ren, Jia Yang, Bo Tao, Wei-Jun Cai, Steve E. Lohrenz, Charles S. Hopkinson, Mingliang Liu, Qichun Yang, Chaoqun (Crystal) Lu, Bowen Zhang, Kamaljit Banger, Shufen Pan, Ruoying He, Zuo Xue

Chaoqun (Crystal) Lu

Knowledge about the annual and seasonal patterns of organic and inorganic carbon (C) exports from the major rivers of the world to the coastal ocean is essential for our understanding and potential management of the global C budget so as to limit anthropogenic modification of global climate. Unfortunately our predictive understanding of what controls the timing, magnitude, and quality of C export is still rudimentary. Here we use a process-based coupled hydrologic/ecosystem biogeochemistry model (the Dynamic Land Ecosystem Model) to examine how climate variability and extreme events, changing land use, and atmospheric chemistry have affected the annual and seasonal patterns …

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Environmental Forcing Does Not Induce Diel Or Synoptic Variation In The Carbon Isotope Content Of Forest Soil Respiration, Steven J. Hall, D. R. Bowling, J. E. Egan Aug 2015

Environmental Forcing Does Not Induce Diel Or Synoptic Variation In The Carbon Isotope Content Of Forest Soil Respiration, Steven J. Hall, D. R. Bowling, J. E. Egan

Steven J. Hall

Recent studies have examined temporal fluctuations in the amount and carbon isotope content (δ13C) of CO2 produced by the respiration of roots and soil organisms. These changes have been correlated with diel cycles of environmental forcing (e.g., sunlight and soil temperature) and with synoptic-scale atmospheric motion (e.g., rain events and pressure-induced ventilation). We used an extensive suite of measurements to examine soil respiration over 2 months in a subalpine forest in Colorado, USA (the Niwot Ridge AmeriFlux forest). Observations included automated measurements of CO2 and δ13C of CO2 in the soil efflux, the soil gas profile, and forest air. There …

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Improved Detection By Ensemble-Decision Aliquot Ranking Of Circulating Tumor Cells With Low Numbers Of A Targeted Surface Antigen, Eleanor S. Johnson, Robbyn K. Anand, Daniel T. Chiu Aug 2015

Improved Detection By Ensemble-Decision Aliquot Ranking Of Circulating Tumor Cells With Low Numbers Of A Targeted Surface Antigen, Eleanor S. Johnson, Robbyn K. Anand, Daniel T. Chiu

Robbyn Anand

Circulating tumor cells (CTCs) are shed from a solid tumor into the bloodstream and can seed new metastases. CTCs hold promise for cancer diagnosis and prognosis and to increase our understanding of the metastatic process. However, their low numbers in blood and varied phenotypic characteristics make their detection and isolation difficult. One source of heterogeneity among CTCs is molecular: When they leave the primary tumor, these cells must undergo a molecular transition, which increases their mobility and chance of survival in the blood. During this molecular transition, the cells lose some of their epithelial character, which is manifested by the …

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Toward “Optimal” Integration Of Terrestrial Biosphere Models, Christopher R. Schwalm, Deborah N. Huntzinger, Joshua B. Fisher, Anna M. Michalak, Kevin Bowman, Philippe Ciais, Robert Cook, Bassil El-Masri, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Anthony W. King, Hiumin Lei, Junjie Liu, Chaoqun (Crystal) Lu, Jaifu Mao, Shushi Peng, Benjamin Poulter, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang, Ning Zeng Jun 2015

Toward “Optimal” Integration Of Terrestrial Biosphere Models, Christopher R. Schwalm, Deborah N. Huntzinger, Joshua B. Fisher, Anna M. Michalak, Kevin Bowman, Philippe Ciais, Robert Cook, Bassil El-Masri, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Anthony W. King, Hiumin Lei, Junjie Liu, Chaoqun (Crystal) Lu, Jaifu Mao, Shushi Peng, Benjamin Poulter, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang, Ning Zeng

Chaoqun (Crystal) Lu

Multimodel ensembles (MME) are commonplace in Earth system modeling. Here we perform MME integration using a 10-member ensemble of terrestrial biosphere models (TBMs) from the Multiscale synthesis and Terrestrial Model Intercomparison Project (MsTMIP). We contrast optimal (skill based for present-day carbon cycling) versus naïve (“one model-one vote”) integration. MsTMIP optimal and naïve mean land sink strength estimates (−1.16 versus −1.15 Pg C per annum respectively) are statistically indistinguishable. This holds also for grid cell values and extends to gross uptake, biomass, and net ecosystem productivity. TBM skill is similarly indistinguishable. The added complexity of skill-based integration does not materially change …

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Global Patterns And Controls Of Soil Organic Carbon Dynamics As Simulated By Multiple Terrestrial Biosphere Models: Current Status And Future Directions, Hanqin Tian, Chaoqun (Crystal) Lu, Jia Yang, Kamaljit Banger, Denorah N. Huntzinger, Christopher R. Schwalm, Anna M. Michalak, Robert Cook, Philippe Ciais, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul K. Jain, Huimin Lei, Jiafu Mao, Shufen Pan, Wilfred M. Post, Shushi Peng, Benjamin Poulter, Wei Ren, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Weile Wang, Yaxing Wei, Qichun Yang, Bowen Zhang, Ning Zeng Jun 2015

Global Patterns And Controls Of Soil Organic Carbon Dynamics As Simulated By Multiple Terrestrial Biosphere Models: Current Status And Future Directions, Hanqin Tian, Chaoqun (Crystal) Lu, Jia Yang, Kamaljit Banger, Denorah N. Huntzinger, Christopher R. Schwalm, Anna M. Michalak, Robert Cook, Philippe Ciais, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul K. Jain, Huimin Lei, Jiafu Mao, Shufen Pan, Wilfred M. Post, Shushi Peng, Benjamin Poulter, Wei Ren, Daniel Ricciuto, Kevin Schaefer, Xiaoying Shi, Bo Tao, Weile Wang, Yaxing Wei, Qichun Yang, Bowen Zhang, Ning Zeng

Chaoqun (Crystal) Lu

Soil is the largest organic carbon (C) pool of terrestrial ecosystems, and C loss from soil accounts for a large proportion of land-atmosphere C exchange. Therefore, a small change in soil organic C (SOC) can affect atmospheric carbon dioxide (CO2) concentration and climate change. In the past decades, a wide variety of studies have been conducted to quantify global SOC stocks and soil C exchange with the atmosphere through site measurements, inventories, and empirical/process-based modeling. However, these estimates are highly uncertain, and identifying major driving forces controlling soil C dynamics remains a key research challenge. This study has compiled century-long …

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Large Fluxes And Rapid Turnover Of Mineral-Associated Carbon Across Topographic Gradients In A Humid Tropical Forest: Insights From Paired 14c Analysis, Steven J. Hall, G. Mcnicol, T. Natake, W. L. Silver Apr 2015

Large Fluxes And Rapid Turnover Of Mineral-Associated Carbon Across Topographic Gradients In A Humid Tropical Forest: Insights From Paired 14c Analysis, Steven J. Hall, G. Mcnicol, T. Natake, W. L. Silver

Steven J. Hall

It has been proposed that the large soil carbon (C) stocks of humid tropical forests result predominantly from C stabilization by reactive minerals, whereas oxygen (O2) limitation of decomposition has received much less attention. We examined the importance of these factors in explaining patterns of C stocks and turnover in the Luquillo Experimental Forest, Puerto Rico, using radiocarbon (14C) measurements of contemporary and archived samples. Samples from ridge, slope, and valley positions spanned three soil orders (Ultisol, Oxisol, Inceptisol) representative of humid tropical forests, and differed in texture, reactive metal content, O2 availability, and root biomass. Mineral-associated C comprised the …

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Global Methane And Nitrous Oxide Emissions From Terrestrial Ecosystems Due To Multiple Environmental Changes, Hanqin Tian, Guangsheng Chen, Chaoqun (Crystal) Lu, Xiaofeng Xu, Wei Ren, Bowen Zhang, Kamaljit Banger, Bo Tao, Shufen Pan, Mingliang Liu, Chi Zhang, Lori Bruhwiler, Steven Wofsy Mar 2015

Global Methane And Nitrous Oxide Emissions From Terrestrial Ecosystems Due To Multiple Environmental Changes, Hanqin Tian, Guangsheng Chen, Chaoqun (Crystal) Lu, Xiaofeng Xu, Wei Ren, Bowen Zhang, Kamaljit Banger, Bo Tao, Shufen Pan, Mingliang Liu, Chi Zhang, Lori Bruhwiler, Steven Wofsy

Chaoqun (Crystal) Lu

Greenhouse gas (GHG)-induced climate change is among the most pressing sustainability challenges facing humanity today, posing serious risks for ecosystem health. Methane (CH4) and nitrous oxide (N2O) are the two most important GHGs after carbon dioxide (CO2), but their regional and global budgets are not well known. In this study, we applied a process-based coupled biogeochemical model to concurrently estimate the magnitude and spatial and temporal patterns of CH4 and N2O fluxes as driven by multiple environmental changes, including climate variability, rising atmospheric CO2, increasing nitrogen deposition, tropospheric ozone pollution, land use change, and nitrogen fertilizer use. The estimated CH4 …

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Comparison Of Spatial Association Approaches For Landscape Mapping Of Soil Organic Carbon Stocks, Bradley A. Miller, S. Koszinski, M. Wehrhan, M. Sommer Mar 2015

Comparison Of Spatial Association Approaches For Landscape Mapping Of Soil Organic Carbon Stocks, Bradley A. Miller, S. Koszinski, M. Wehrhan, M. Sommer

Bradley A Miller

The distribution of soil organic carbon (SOC) can be variable at small analysis scales, but consideration of its role in regional and global issues demands the mapping of large extents. There are many different strategies for mapping SOC, among which is to model the variables needed to calculate the SOC stock indirectly or to model the SOC stock directly. The purpose of this research is to compare direct and indirect approaches to mapping SOC stocks from rule-based, multiple linear regression models applied at the landscape scale via spatial association. The final products for both strategies are high-resolution maps of SOC …

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Impact Of Multi-Scale Predictor Selection For Modeling Soil Properties, Bradley A. Miller, Sylvia Koszinski, Marc Wehrhan, Michael Sommer Feb 2015

Impact Of Multi-Scale Predictor Selection For Modeling Soil Properties, Bradley A. Miller, Sylvia Koszinski, Marc Wehrhan, Michael Sommer

Bradley A Miller

Applying a data mining tool used regularly in digital soil mapping, this research focuses on the optimal inclusion of predictors for soil–landscape modeling by utilizing as wide of a pool of variables as possible. Predictor variables for digital soil mapping are often chosen on the basis of data availability and the researcher's expert knowledge. Predictor variables commonly overlooked include alternative analysis scales for land-surface derivatives and additional remote sensing products. For this study, a pool of 412 potential predictors was assembled, which included qualitative location classes, elevation, land-surface derivatives (with a wide range of analysis scales), hydrologic indicators, as well …

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Synthetic Strategies For Tailoring The Physicochemical And Magnetic Properties Of Hydrophobic Magnetic Ionic Liquids, Omprakash Nacham, Kevin D. Clark, Honglian Yu, Jared L. Anderson Jan 2015

Synthetic Strategies For Tailoring The Physicochemical And Magnetic Properties Of Hydrophobic Magnetic Ionic Liquids, Omprakash Nacham, Kevin D. Clark, Honglian Yu, Jared L. Anderson

Jared L. Anderson

Magnetic ionic liquids (MILs) are a subclass of ionic liquids (ILs) containing paramagnetic components and are readily manipulated by an external magnetic field. Due to their hydrophilic nature, very few applications of MILs in aqueous systems have been reported. In this study, three general classes of hydrophobic MILs including monocationic, symmetrical/unsymmetrical dicationic, and symmetrical/unsymmetrical tricationic MILs were synthesized and characterized. By tuning the structure of the MIL, various physicochemical properties including water solubility, magnetic susceptibility, and melting point were regulated. MILs synthesized with the benzimidazolium cation were shown to exhibit lower water solubility (0.1% (w/v)) when compared to those containing …

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Extraction Of Dna By Magnetic Ionic Liquids: Tunable Solvents For Rapid And Selective Dna Analysis, Kevin D. Clark, Omprakash Nacham, Honglian Yu, Tianhao Li, Melissa M. Yamsek, Donald R. Ronning, Jared L. Anderson Jan 2015

Extraction Of Dna By Magnetic Ionic Liquids: Tunable Solvents For Rapid And Selective Dna Analysis, Kevin D. Clark, Omprakash Nacham, Honglian Yu, Tianhao Li, Melissa M. Yamsek, Donald R. Ronning, Jared L. Anderson

Jared L. Anderson

DNA extraction represents a significant bottleneck in nucleic acid analysis. In this study, hydrophobic magnetic ionic liquids (MILs) were synthesized and employed as solvents for the rapid and efficient extraction of DNA from aqueous solution. The DNA-enriched microdroplets were manipulated by application of a magnetic field. The three MILs examined in this study exhibited unique DNA extraction capabilities when applied toward a variety of DNA samples and matrices. High extraction efficiencies were obtained for smaller single-stranded and double-stranded DNA using the benzyltrioctylammonium bromotrichloroferrate(III) ([(C8)3BnN+][FeCl3Br–]) MIL, while the dicationic 1,12-di(3-hexadecylbenzimidazolium)dodecane bis[(trifluoromethyl)sulfonyl]imide bromotrichloroferrate(III) ([(C16BnIM)2C122+][NTf2–, FeCl3Br–]) MIL produced higher extraction efficiencies for larger …

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Advancing Computational Toxicology In A Regulatory Setting: A Selected Review Of The Accomplishments Of Gilman D. Veith (1944–2013), Steven P. Bradbury, Christine L. Russom, Patricia K. Schmieder, Terry W. Schultz, Robert Diderich, Charles M. Auer Jan 2015

Advancing Computational Toxicology In A Regulatory Setting: A Selected Review Of The Accomplishments Of Gilman D. Veith (1944–2013), Steven P. Bradbury, Christine L. Russom, Patricia K. Schmieder, Terry W. Schultz, Robert Diderich, Charles M. Auer

Steven P. Bradbury

With the passing of Dr. Gilman D. Veith on August 18, 2013, the research community lost one of its true visionaries in the development and implementation of alternative in silico and in vitro toxicology models in human health and ecological risk assessment. His career spanned more than four decades, during which he repeatedly demonstrated vision and leadership to advance alternative testing and assessment research and to guide the adoption of research accomplishments into U.S. and international chemical regulatory programs. His ability to advance toxicological and environmental exposure research, and associated quantitative structure– activity relationships (QSARs), for application in environmental regulatory …

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Large Interdomain Rearrangement Triggered By Suppression Of Micro- To Millisecond Dynamics In Bacterial ​Enzyme I, Vincenzo Venditti, Vitali Tugarinov, Charles D. Schwieters, Alexander Grishaev, G. Marius Clore Jan 2015

Large Interdomain Rearrangement Triggered By Suppression Of Micro- To Millisecond Dynamics In Bacterial ​Enzyme I, Vincenzo Venditti, Vitali Tugarinov, Charles D. Schwieters, Alexander Grishaev, G. Marius Clore

Vincenzo Venditti

Enzyme I (EI), the first component of the bacterial phosphotransfer signal transduction system, undergoes one of the largest substrate-induced interdomain rearrangements documented to date. Here we characterize the perturbations generated by two small molecules, the natural substrate phosphoenolpyruvate and the inhibitor a-ketoglutarate, on the structure and dynamics of EI using NMR, small-angle X-ray scattering and biochemical techniques. The results indicate unambiguously that the open-to-closed conformational switch of EI is triggered by complete suppression of micro- to millisecond dynamics within the C-terminal domain of EI. Indeed, we show that a ligand-induced transition from a dynamic to a more rigid conformational state …

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Negative Dielectrophoretic Capture And Repulsion Of Single Cells At A Bipolar Electrode: The Impact Of Faradaic Ion Enrichment And Depletion, Robbyn K. Anand, Eleanor S. Johnson, Daniel T. Chiu Jan 2015

Negative Dielectrophoretic Capture And Repulsion Of Single Cells At A Bipolar Electrode: The Impact Of Faradaic Ion Enrichment And Depletion, Robbyn K. Anand, Eleanor S. Johnson, Daniel T. Chiu

Robbyn Anand

This paper describes the dielectrophoretic (DEP) forces generated by a bipolar electrode (BPE) in a microfluidic device and elucidates the impact of faradaic ion enrichment and depletion (FIE and FID) on electric field gradients. DEP technologies for manipulating biological cells provide several distinct advantages over other cell-handling techniques including label-free selectivity, inexpensive device components, and amenability to single-cell and array-based applications. However, extension to the array format is nontrivial, and DEP forces are notoriously short-range, limiting device dimensions and throughput. BPEs present an attractive option for DEP because of the ease with which they can be arrayed. Here, we present …

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Responses Of Global Terrestrial Evapotranspiration To Climate Change And Increasing Atmospheric Co2 In The 21st Century, Shufen Pan, Hanqin Tian, Shree R. S. Dangal, Qichun Yang, Jia Yang, Chaoqun (Crystal) Lu, Bo Tao, Wei Ren, Zhiyun Ouyang Jan 2015

Responses Of Global Terrestrial Evapotranspiration To Climate Change And Increasing Atmospheric Co2 In The 21st Century, Shufen Pan, Hanqin Tian, Shree R. S. Dangal, Qichun Yang, Jia Yang, Chaoqun (Crystal) Lu, Bo Tao, Wei Ren, Zhiyun Ouyang

Chaoqun (Crystal) Lu

Quantifying the spatial and temporal patterns of the water lost to the atmosphere through land surface evapotranspiration (ET) is essential for understanding the global hydrological cycle, but remains much uncertain. In this study, we use the Dynamic Land Ecosystem Model to estimate the global terrestrial ET during 2000–2009 and project its changes in response to climate change and increasing atmospheric CO2 under two IPCC SRES scenarios (A2 and B1) during 2010–2099. Modeled results show a mean annual global terrestrial ET of about 549 (545–552) mm yr−1 during 2000–2009. Relative to the 2000s, global terrestrial ET for the 2090s would increase …

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