Physical Sciences and Mathematics Commons^™

Structural Characterization Of Two Large Icosahedral Dna Viruses And Their Capsid Assembly Mechanisms, Yuejiao Xian

Open Access Theses & Dissertations

In the last three decades, many large DNA viruses were discovered and grouped into a loosely defined clade of Nucleocytoplasmic Large DNA Viruses (NCLDVs). NCLDVs infect a wide range of hosts from single cellular protists to large animals. Recently, these viruses were classified as a new phylum of Nucleocytoviricota under the kingdom of Bamfordvirae. The genomes of these Nucleocytoviricota viruses (NCVs) are remarkedly large and complicated, containing many cellular genes from all three domains of life, which raised intensive debates on their evolutionary origins. Despite being classified in the same phylum, their physical structures vary and can be roughly classified …

Fundamental Studies Of Nanomaterial-Mediated Photothermal Effects And Novel Applications In Visual Quantitative Disease Diagnoses, Wan Zhou

Open Access Theses & Dissertations

Infectious diseases and cancers frequently cause public health concerns and high burdens on health care globally. Early diagnosis of these diseases can provide an important guide on prevention, treatment, and prognosis in clinical practice. However, current laboratory diagnostic methods, such as nucleic acid- and protein-based detection methods, require sophisticated infrastructure, expensive and bulky instrumentation, well-trained personnel, and time-consuming processes, which significantly leads to high cost of detection assays and limit their wide accessibility, especially in low-resource settings. To address these issues, we have developed multiple simple, low-cost, and visual quantitative diagnostic methods based on nanomaterial-mediated photothermal effects for the detection …

Classification Of The Subalgebras Of The Algebra Of All 2 By 2 Matrices, Justin Luis Bernal

Open Access Theses & Dissertations

Classification of the subalgebras of the familiar algebra of all $n\times n$ real matrices over the real numbers can get quite unwieldy as all subalgebras are of dimension ranging from $1$ to $n^2$. Classification of the subalgebras of the algebra of all $2\times 2$ real matrices over the real numbers is an interesting first start.

Since $\2$ is of dimension $4$ then its possible subalgebras are of dimension $1, 2, 3,$ or $4$. The one-dimensional subalgebra and four-dimensional subalgebra need little to no attention. The two-dimensional and three-dimensional subalgebras however turn out to be of significance.

It turns out there …

Using Prosody To Spot Location Mentions, Gerardo Cervantes

Open Access Theses & Dissertations

Identifying location mentions in speech is important for many information retrieval and information extraction tasks; here I explore the use of prosody for location spotting. While previous work has explored the use of prosody for spotting named entities, including locations, the specific value of prosody for finding locations in spontaneous speech has not been measured. Using the Switchboard corpus and LSTM modeling I obtain results indicating that prosody is useful in spotting location mentions. Further, I identify specific prosodic

features that tend to mark locations in American English.

Autonomous Trading Strategies For Dynamic Energy Markets, Moinul Morshed Porag Chowdhury

Open Access Theses & Dissertations

With increasing energy demand and an intermittent supply of renewable energy sources, our current energy grid needs a transformation towards a more robust, reliable energy trading architecture. The smart grid promises this architecture as the future of the present energy market, where traders will use digital technologies to automate the management of power delivery. It will improve many issues of the current energy grid such as sustainable, clean, renewable, reliable and secure energy supply, customer participation in markets, distributed generation, and transparency in energy trading. Using autonomous trading agents, we can bridge several dynamic energy markets and ensure an efficient …

Structural Analysis Of Deformed Caprock Associated With A Salt Shoulder At Gypsum Valley Salt Wall, Paradox Basin, Colorado, Hanah Draper

Open Access Theses & Dissertations

This study documents the style and distribution of deformation present in Triassic-age gypsic and carbonate caprock associated with the Gypsum Valley Salt Wall Salt Shoulder in the Paradox Basin, Colorado in order to determine the mechanism and timing of deformation. Mapping of gypsic and carbonate capstone facies shows that the caprock layering that was generated during formation has been deformed by large-and-small-scale folding and faulting, brecciation, and boudinage. Deformation within the caprock resulted in widely variable orientations along the length of the salt shoulder, that also varies locally in intensity of deformation and with proximity to the passively rising diapir …

Comparative Experimental And Theoretical Study Of Dopamine And Serotonin Interaction, Jose A. Guerrero

Open Access Theses & Dissertations

To accurately identify and measure the concentrations of dopamine (DA) and serotonin (5-HT) in mixtures of these neurotransmitters without labeling, a comprehensive, comparative computational and Raman experimental analysis is provided. While the distinction between these two analytes may be accomplished for concentrations in the millimolar range of these mixtures, their accurate quantification remains unattainable. As shown for the first time in this study, potential creation of a new composite resulting from their interactions with each other could be a reason for this lack of quantification.

Although this new hydrogen-bonded complex greatly complicates future analyte differentiation and quantification at concentrations typical …

Photovoltage Enhancement For Stable Perovskite Solar Cells With A Temperature-Controlled Grain Growth Technique, Luis Eduardo Valerio

Open Access Theses & Dissertations

By performing strong characterizations methods, one can begin to fully understand the chemistry and composition behind a great performing perovskite solar cell. Understanding how the interaction between layers inside a solar cell is driven by the temperature and overall environment is a key element to improve the fabrication process and overall efficiency of such cells. This Thesis will present a study of the hybrid organic-inorganic, mixed-cation, mixed-halide, temperature and thickness-controlled perovskite solar cell. A constant power conversion efficiency (PCE) ranging between 15-17% and an open circuit voltage V¬oc above 1.05 V for a wide-band gap perovskite cell is presented.

Applications Of Ornstein-Uhlenbeck Type Stochastic Differential Equations, Osei Kofi Tweneboah

Open Access Theses & Dissertations

In this Dissertation, we show with plausible arguments that the Stochastic Differential Equations (SDEs) arising on the superposition and coupling system of independent Ornstein-Uhlenbeck process is a new method available in modern literature that takes the properties and behavior of the data into consideration when performing the statistical analysis of the time series.

The time series to be analyzed is thought of as a source of fluctuations, and thus we need a model that takes this behavior into consideration when performing such analysis. Most of the standard methods fail to take into account the physical behavior of the time series, …

Comparing Predictive Performance Of Statistical Learning Models On Medical Data, Francis Biney

Open Access Theses & Dissertations

This work investigates the predictive performance of 10 Machine learning models on three medical data including Breast cancer, Heart disease and Prostate cancer. Furthermore, we use the models to identify risk factors that contribute significantly to these diseases.

The models considered include; Logistic regression with L1 and L_2 penalties, Principal component logistic regression(PCR-LR), Partial least squares logistic regression(PLS-LR), Multivariate adaptive regression splines(MARS), Support vector machine with Radial Basis Kernel (SVM-RBK), Random Forest(RF), Gradient Boosting Machines(GBM), Elastic Net (Enet) and Feedforward Neural Network(FFNN). The models were grouped according to their similarities and learning style; i) Linear regularized models: LR-Lasso, LR-Ridge and …

Mathematical Modeling Of Microemulsification Processes, Numerical Simulations And Applications To Drug Delivery, Ogochukwu Nneka Ifeacho

Open Access Theses & Dissertations

Microemulsion systems are a great pharmaceutical tool for the delivery of formulations containing multiple hydrophilic and hydrophobic ingredients of varying physicochemical properties. These systems are gaining popularity because of its long shelf life, improved drug solubilisation capacity, easy preparation and improvement of bioavailability. Despite the advantages associated with the use of microemulsion systems in pharmaceutical industries, the major challenge impeding their use has been and continues to be the lack of understanding of these systems.

Microemulsions can be mathematically modeled by an initial boundary value problem involving a sixth order nonlinear time dependent equation. In this Thesis, we present a …

Stochastic Modeling Of Earthquakes And Option Pricing Using Bns-Gamma-Ou Model, Mandela Bright Quashie

Open Access Theses & Dissertations

High frequency data are becoming increasingly popular these days. They are fundamental in basically every facet of people’s lives. They are the determining factors in hedging in the field of finance. In geology, they help in the accurate prediction of earthquakes’ magnitude which goes along way to help save lives and properties.

High frequency data are also used more and more frequently for speculations. For this reason, it is important not only for scientists to apply models allowing correct quantification of these data, but also to improve the eciency of these models.

The Black-Scholes model, which is widely used because …

Finalcache: Eviction Based On Implicit Entry Reachability, Adrian Veliz

Open Access Theses & Dissertations

Software caches for garbage collected systems are unaware which cache entries are referenced by a client program. Lacking this key information, software caches cannot determine the cache’s contribution to the program’s memory footprint. Furthermore, their eviction heuristics must rely on access history as a proxy for usage. Divergence between usage and access history can undermine the intention of eviction thereby resulting in problematic cache behavior.

This dissertation proposes designs for a novel family of “usage-based” software cache informed of entry reachability by the automatic memory management system. Unlike extant software caches, usage-based caches can accurately determine their memory footprint because …

Application Of Non-Seismic Methods To Analyze And Model The Geometry Of The Northern Margin Of The Onion Creek Salt Diapir, Paradox Basin, Utah, Julia Michelle Astromovich

Open Access Theses & Dissertations

The Onion Creek salt diapir lies within the Paradox Basin of Utah where it forms part of a series of salt walls that separate the Paradox Basin into smaller sub-basins. These sub-basins and associated salt diapirs remain key to several oil and gas traps in the region. A series of anomalous tight folds occur on the northern side of the Onion Creek diapir within the Permian Cutler Group Undifferentiated. These folds are thought to be associated with a shallow detachment horizon with three possible origins:1) a weak shale layer within the Cutler Group, 2) a salt shoulder, or 3) a …

Development On Of An Unmanned Aerial Vehicle-Based Orangutan Population Assessment And Monitoring Method For The Multifunctional Landscape Of East Kalimantan, Indonesia, Muhammad Sugihono Hanggito

Open Access Theses & Dissertations

Deforestation, habitat degradation, and other forms of land conversion are threatening the existence of orangutans (Pongo spp.), the critically endangered great apes that only live on the two large Sunda-shelf islands of Sumatra and Borneo. Currently, orangutan populations persist not only within conservation or protected areas but also in other functional landscapes such as forest/acacia plantations, oil palm plantations, and mining concessions. The presence of orangutan populations in this recently modified multifunctional landscape has the potential to exacerbate human-orangutan conflict, which could further threaten orangutan populations. Lack of information about the distribution and size of orangutan populations hampers long term …

Water Sourcing Strategies Of Highly Resilient Vegetation In Desert Soils: Stable Isotope Analysis Of A Northern Chihuahuan Desert Ecosystem, Hayden Eleanor Thompson

Open Access Theses & Dissertations

Plant water use strategies and water transport dynamics are important for understanding ecosystem productivity and soil-vegetation-atmosphere interactions within an environment (Li et al., 2007). Recent research using stable isotope analysis in wet and humid climates has found that vegetation uses tightly particle-bound water stored in the soil that does not participate in translatory flow (Brooks et al., 2010; Goldsmith et al., 2011; McDonnell 2014). In arid and semi-arid deserts of the United States, highly resilient vegetation, such as the Honey Mesquite (Prosopis glandulosa) and the Creosote shrub (Larrea tridentata), exhibit some degree of activity year-round despite limited water availability during …

Brian Valdez - Dynamics And Control Of A 3-Dof Manipulator With Deep Learning Feedback, Brian Orlando Valdez

Open Access Theses & Dissertations

With the ever-increasing demands in the space domain and accessibility to low-cost small satellite platforms for educational and scientific projects, efforts are being made in various technology capacities including robotics and artificial intelligence in microgravity. The MIRO Center for Space Exploration and Technology Research (cSETR) prepares the development of their second nanosatellite to launch to space and it is with that opportunity that a 3-DOF robotic arm is in development to be one of the payloads in the nanosatellite. Analyses, hardware implementation, and testing demonstrate a potential positive outcome from including the payload in the nanosatellite and a deep learning …

Lévy Processes: Characterizing Volcanic And Financial Time Series, Peter Kwadwo Asante

Open Access Theses & Dissertations

In this work, we use the Diffusion Entropy Analysis (DEA) to analyze and detect the scaling properties of time series from both emerging and well established markets as well as volcanic eruptions recorded by a seismic station, both financial and volcanic time series data are known to have high frequencies (i.e they are collected at an extremely fine scale). The objective is to determine the characterization i.e whether they follow a Gaussian or Lévy distribution. If they do follow a Lévy distribution we are then interested in finding if they are characterized by a Lévy walk which has a finite …

Fluvial Interactions Of The Jurassic Salt Wash Member Of The Morrison Formation With The Gypsum Valley Salt Diapir, Co, Clair Henry Bailey

Open Access Theses & Dissertations

Gypsum Valley diapir in Gypsum Valley Colorado is an ideal location to investigate the interaction between a fluvial system and a diapir going through late stage collapse and rise. The outcrop exposures in Gypsum Valley allow for the analysis in changes of the fluvial system of the Salt Wash Member of the Morrison Formation as it gets redirected by the salt wall and deposits sediment on top of, on the margins, and in the Disappointment and Dry Creek minibasins. Previous work has focused on understanding and predicting how fluvial systems react when they encounter a salt diapir, but all the …

Predicting Stochastic Volatility For Extreme Fluctuations In High Frequency Time Series, Md Al Masum Bhuiyan

Open Access Theses & Dissertations

This work is devoted to the study of modeling high frequency time series including extreme fluctuations. As the high frequency data are collected at extremely fine scales, the fluctuations can capture the dynamics of data that evolve over time. A class of volatility models with time-varying parameters is used to forecast the volatility in a stationary condition at different lags. The modeling of stationary time series with consistent properties facilitates prediction with much certainty.

A large set of high frequency financial returns, closing prices of stock markets, high magnitudes of seismograms generated by the natural earthquakes, and the mining explosions …

A Comparative Study Of The Impact Of Depth In Deep Learning Architectures, Kirsten Byers

Open Access Theses & Dissertations

Machine Learning continues to evolve as applications become more complex. Neural Networks, or Deep Networks, are integral to machine learning and the entire taxonomy of Artificial Intelligence [Sze17]. Intelligent structures and algorithms continue to advance, keeping pace with the complexi-ty of data. Changes in architecture, algorithms, and parameters are necessary to keep up with com-putational complexity and data available. This study focuses on how changes in depth of the archi-tecture affect performance on three distinct datasets, including one on Heart Disease. An adaptable network is created in original code, trained, and tested on these datasets. Its performance parameters are observed …

Shallow Seismic Modeling Of The Hydrothermal Plumbing System Beneath Old Faithful Geyser In The Upper Geyser Basin Of Yellowstone National Park, Jordan Rigdon Caylor

Open Access Theses & Dissertations

In November 2016, a 2-D and 3-D seismic survey was performed around Old Faithful Geyser in the southeastern portion of the Upper Geyser Basin in Yellowstone National Park. The survey consisted of 521 3-component seismic receiver locations including 39 receivers on a ~1km NE-SW trending line crossing Old Faithful Geyser. A 5.4kg sledgehammer striking a metal plate was our source with a dominant frequency of ~40Hz. Our 2-D line crosses Old Faithful in a NE-SW direction with station spacing at 25-30m with ~100m spacing on either side of Old Faithful and a total length of 1024m. Our 3-D seismic grid …

Uranium Series Dating And Geochemistry Of Fault Zone Precipitated Secondary Carbonates: Insights Into Paleo Fluid Sources, Tectonics And Climate In The Rio Grande Rift, Victor Higareda Garcia

Open Access Theses & Dissertations

Fault zones in the shallow crust impact a variety of geological processes including mineral deposition, fluid flow patterns in shallow and deep groundwater aquifers, and most importantly seismic activity. The specific interplays of fault zones, seismicity, and groundwater flows are complex and not well understood despite the importance they have to society. The Rio Grande rift is a region impacted by seismic and volcanic activity that place the first order control on mineral formation and fluid flow patterns. It is also a region that is often disregarded as a seismic hazard due to its inferred low tectonic rates and long …

Understanding The Connections: An Analysis Of Climate Change And Human Security, Erica Martinez

Open Access Theses & Dissertations

Increasing evidence shows that the impacts of anthropogenic climate change have magnified and will have dramatic implications for both the natural and social systems (Adger et al., 2014). While research on the security implications of climate change has been found to have a major bearing on policy making, experts have not reached a consensus about how climate change and human security are related, leaving the climate-security nexus and corresponding policies underdeveloped.

The purpose of this study is to delineate and scrutinize the relationship between climate change and human security so that a more comprehensive understanding of the phenomenon is achieved. …

Compound Vision Approach For Autonomous Vehicles Navigation, Michael Mikhael

Open Access Theses & Dissertations

An analogy can be made between the sensing that occurs in simple robots and drones and that in insects and crustaceans, especially in basic navigation requirements. Thus, an approach in robots/drones based on compound eye vision could be useful. In this research, several image processing algorithms were used to detect and track moving objects starting with images upon which a grid (compound eye image) was superimposed, including contours detection, the second moments of those contours along with the grid applied to the original image, and Fourier Transforms and inverse Fourier Transforms. The latter also provide information about scene or camera …

Free Semigroups And Identites For A Class Of Monoids, Enrique Salcido

Open Access Theses & Dissertations

The study of words as a mathematical object is a deep and rich field of study. Algebra, Combinatorics, Theoretical Computer Science etc., are major disciplines, which are fully using this study. Combinatorial properties (via Codes, Free Hulls, Infinite Words), and algebraic properties of words are presented in this Thesis. The free semigroup on a set (alphabet) X and finite presentation of semigroups have a central place in the algebraic study of words. The last part of the Thesis is devoted to the study of identities in the alphabet X = {x,y} for a class of monoids. The characterization of such …

Investigation Of Iron Doped Gallium Oxide (Ga-Fe-O) System: Structure Property Relationship And Performance Evaluation For Optical And Catalytic Applications, Swadipta Roy

Open Access Theses & Dissertations

From September 2012 to May 2015, a phenocam monitored the seaward edge of a protected mangrove forest. Calculated GCC revealed seasonal greening patterns of a mangrove species, Rhizophoa apiculata, and an overall increase in the GCC, suggesting mangrove expansion. In comparing temperature and precipitation effects, it was found that this particular mangrove species had a greening optima at temperatures between 28°C and 28.5°C, and greening and canopy development response lag time of 10 weeks in response to precipitation. Tree saplings were monitored and showed to grow by 50%, mostly during a three month period during the rainy season. The establishment …

Positivity-Preserving Segregate-Flux Method For Infiltration Dynamics In Tumor Growth Models, Gilbert Danso Acheampong

Open Access Theses & Dissertations

We study the positivity preserving property and an incompressibility condition in a recently proposed tumor growth model as well as its numerical simulations. In this model, the biological process is described by a free-boundary problem of hyperbolic equations that govern the in-tumor motion of cancer cells and the infiltration of immune cells. Particularly, due to an assumption that cells take constant volume (the incompressibility condition), the tumor growth/shrinkage is closely correlated to the magnitude of infiltration of immune cells into the tumor.

Despite the fact that previous simulation results largely reproduced experimental data, there remain unanswered questions that are crucial …

Density Functional Calculations On Single Molecular (1d) And Van Der Waals Bi -Layered (2d) Magnets., Md Shamsul Alam

Open Access Theses & Dissertations

Low-dimensional magnetic materials show novel properties that is not seen in bulk magnets. The weak interactions such as spin-orbit interactions, electron correlation, van der Waals interaction in case magnetic bi-layers, play an important role in determining the properties of the system. Using density functional theory, we computationally investigated two categories of magnetic material- 1: Single Molecular Magnets (SMM) 2: Van der Waals layered Cr-Halide magnets. We used different classes of density functionals to examine the spin ordering and magnetic anisotropy barriers in several single molecule magnets - Mn12, Co4, Ni4, V15. We find that the magnetic anisotropy barrier significantly depends …

Associations Of Traffic Related Air Pollution With Physical Activity And Cardiorespiratory Health Outcomes In At-Risk Populations From El Paso, Texas, Juan Aguilera

Open Access Theses & Dissertations

Exposure to air pollution from traffic-related emissions is a considerable preventable cause of respiratory and cardiovascular diseases. However, the impacts on at-risk populations, such as children with asthma and low-income residents, are yet to be fully understood in the border city of El Paso, TX. This dissertation focused on the most common traffic-related pollutants which include particulate matter (PM2.5 and PM10), nitrogen dioxide (NO2), and ozone (O3). The research described in this work provides an overview of air pollution measurements and shares insights from three different studies in our region.

People with asthma are more likely adversely affected by traffic …