Physical Sciences and Mathematics Commons^™

Catch The King Tide 2018: All King Tide Data, Jon Derek Loftis

Data

"Catch the King" is a citizen-science GPS data collection effort centered in Hampton Roads, VA, that seeks to interactively map the King Tide's maximum inundation extents. The goal is to validate and improving predictive model accuracy for future forecasting of increasingly pervasive "nuisance" flooding.

Sediment Transport Model Including Short-Lived Radioisotopes: Model Description And Idealized Test Cases, Justin J. Birchler,, Courtney K. Harris, Christopher R Sherwood, Tara A. Kniskern

VIMS Articles

Geochronologies derived from sediment cores in coastal locations are often used to infer event bed characteristics such as deposit thicknesses and accumulation rates. Such studies commonly use naturally occurring, short-lived radioisotopes, such as Beryllium-7 (Be-7) and Thorium-234 (Th-234), to study depositional and post-depositional processes. These radioisotope activities, however, are not generally represented in sediment transport models that characterize coastal flood and storm deposition with grain size patterns and deposit thicknesses. We modified the Community Sediment Transport Modeling System (CSTMS) to account for reactive tracers and used this capability to represent the behavior of these short-lived radioisotopes on the sediment bed. …

Associated Dataset: Ocean Circulation Causes Strong Variability In The Mid-Atlantic Bight Nitrogen Budget, Marjorie A.M. Friedrichs, Pierre St-Laurent

Data

The dataset includes model outputs used in the associated publication (Friedrichs et al.), which used the United States Eastern Continental Shelf (USECoS) biogeochemical model embedded in the Regional-Ocean-Modeling-System (ROMS) to examine the impact of the oceanic circulation on the nitrogen budget of the Mid-Atlantic Bight (MAB). The model simulation covers the period 2004 to 2008 and is fully described in the associated publication. The model simulation highlights that the horizontal along-shelf and across-shelf fluxes dominate the spatiotemporal variability of net community production (NCP) in the MAB. The highest NCP is found in a year when inorganic nitrogen entering from across …

Symbiotic Unicellular Cyanobacteria Fix Nitrogen In The Arctic Ocean, K. Harding, K. A. Turk-Kubo, Rachel E. Sipler, M. M. Mills, D. A. Bronk

VIMS Articles

Biological dinitrogen (N2) fixation is an important source of nitrogen (N) in low-latitude open oceans. The unusual N2-fixing unicellular cyanobacteria (UCYN-A)/haptophyte symbiosis has been found in an increasing number of unexpected environments, including northern waters of the Danish Straight and Bering and Chukchi Seas. We used nanoscale secondary ion mass spectrometry (nanoSIMS) to measure 15N2 uptake into UCYN-A/haptophyte symbiosis and found that UCYN-A strains identical to low-latitude strains are fixing N2 in the Bering and Chukchi Seas, at rates comparable to subtropical waters. These results show definitively that cyanobacterial N2 fixation is not constrained to subtropical waters, challenging paradigms and …

Building Capacity For Protection Of Wetland Resources In Virginia - Track One, Virginia Department Of Environmental Quality, Center For Coastal Resources Management - Virginia Institute Of Marine Science

Reports

DEQ continues to make significant progress in the development of a comprehensive nontidal wetland regulatory program; refinement of our permitting/compliance database to track impacts, compliance, and compensation by watershed; and continued refinement of our wetland monitoring and assessment tools for use in management decision-making and integration within our water quality programs. This project focused on development of strategies and extension of outreach to improve understanding and protection of high ecological value aquatic resources such as headwater resources and wetlands that may provide added value in improving impaired waters in Virginia. Project activities specifically addressed three of the priority elements in …

Strong Electron-Boson Coupling In The Iron-Based Superconductor Bafe1.9pt0.1as2 Revealed By Infrared Spectroscopy, Zhen Xing, Shanta Saha, J. Paglione, M. M. Qazilbash

Arts & Sciences Articles

Understanding the formation of Cooper pairs in iron-based superconductors is one of the most important topics in condensed matter physics. In conventional superconductors, the electron-phonon interaction leads to the formation of Cooper pairs. In conventional strong-coupling superconductors like lead (Pb), the features due to electron-phonon interaction are evident in the infrared absorption spectra. Here we investigate the infrared absorption spectra of the iron arsenide superconductor BaFe1.9Pt0.1As2. We find that this superconductor has fully gapped (nodeless) Fermi surfaces, and we observe the strong-coupling electron-boson interaction features in the infrared absorption spectra. Through modeling with the Eliashberg function based on Eliashberg theory, …

Firefighter Hood Contamination: Efficiency Of Laundering To Remove Pahs And Frs, Ac Mayer, Kw Fent, S Bertke, Gp Horn, Dl Smith, K Kerber, Mark J. La Guardia

VIMS Articles

Firefighters are occupationally exposed to products of combustion containing polycyclic aromatic hydrocarbons (PAHs) and flame retardants (FRs), potentially contributing to their increased risk for certain cancers. Personal protective equipment (PPE), including firefighter hoods, helps to reduce firefighters’exposure to toxic substances during fire responses by providing a layer of material on which contaminants deposit prior to reaching the firefighters skin.However, over time hoods that retain some contamination may actually contribute to fire-fighters’systemic dose. We investigated the effectiveness of laundering to reduce or remove contamination on the hoods, specifically PAHs and three classes of FRs: polybrominateddiphenyl ethers (PBDEs), non-PBDE flame retardants (NPBFRs), …

Living Shoreline Sea-Level Resiliency: Performance And Adaptive Management Of Existing Sites, C. Scott Hardaway Jr., Donna A. Milligan, Christine A. Wilcox

Reports

The goal of this project is to monitor effectiveness of nature-based resiliency projects such as those that use living shoreline management strategies. Living shoreline strategies can effectively control shoreline erosion while providing water quality benefits and maintaining natural habitat and coastal processes. These ecosystem-based management systems have been the preferred alternative for stabilizing tidal shorelines in the Commonwealth of Virginia since 2011. However, a recent analysis has shown that between 2011 and 2016 only 24% of the permits granted for shore protection were considered living shorelines (ASMFC, 2016). These types of systems may be relatively new to many landowners and …

Targeted Living Shoreline Management Planning For Virginia State Parks In Chesapeake Bay Summary Report, Donna A. Milligan, C. Scott Hardaway Jr., Christine A. Wilcox

Reports

The Commonwealth of Virginia owns numerous tidal, waterfront properties along Chesapeake Bay and its tributaries including state parks, natural area preserves, and wildlife management areas. Many of these parks have eroding shorelines and are at risk from coastal hazards such as tidal flooding, waves, and sea level rise. These environmental threats impact the safety of park visitors and the mission of the parks.

In an effort to address these issues for the parks as well as provide education to the public on living shoreline management strategies, eleven state parks with tidal shoreline along the Chesapeake Bay and its tributaries were …

A Model Archive For Sediment Transport Model Including Short-Lived Radioisotopes: Model Description And Idealized Test Cases, Justin J. Birchler, Courtney K. Harris, Tara A. Kniskern

Data

This dataset includes model input, code, and output used in the publication Birchler et al. (2018, Journal of Marine Science and Engineering), which used a coupled hydrodynamic-sediment transport-biogeochemical model to investigate the roles of resuspension, deposition, on biodiffusion on the behavior of short-lived radioisotopes in an idealized one-dimensional model setting. Model development for this project focused on incorporating radioisotope tracers into the sediment transport module in the Regional Ocean Modeling System (ROMS). As described in Birchler et al. (2018, Journal of Marine Science and Engineering), the model can account for supply and sorption of radioisotope tracers in the …

Stormsense: A Blueprint For Coastal Flood Forecast Information & Automated Alert Messaging Systems, Jon Derek Loftis, Sridhar Katragadda, Sokwoo Rhee, Cuong Nguyen

VIMS Articles

Increased availability of low-cost water level sensors communicating through the Internet of Things (IoT) has expanded the horizons of publicly-ingestible data streams available to modern smart cities. StormSense is an IoT-enabled inundation forecasting research initiative and an active participant in the Global City Teams Challenge seeking to enhance flood preparedness in the smart cities of Hampton Roads, VA for flooding resulting from storm surge, rain, and tides. In this study, we present the a blueprint and series of applicable protocols through the use of the new StormSense water level sensors to help establish a regional resilience monitoring network. In furtherance …

Effects Of Density‐Driven Flows On The Long‐Term Morphodynamic Evolution Of Funnel‐Shaped Estuaries, Matiane Olabarrieta, W. Rockwell Geyer, Giovanni Coco, Carl T. Friedrichs

VIMS Articles

Subtidal flows driven by density gradients affect the tide‐averaged sediment transport in estuaries and, therefore, can influence their long‐term morphodynamic evolution. The three‐dimensional Coupled Ocean‐Atmosphere‐Wave‐Sediment Transport modeling system is applied to numerically analyze the effects of baroclinicity and Earth's rotation on the long‐term morphodynamic evolution of idealized funnel‐shaped estuaries. The morphodynamic evolution in all the analyzed cases reproduced structures identified in many tide‐dominated estuaries: a meandering region in the fluvial‐tidal transition zone, a tidal maximum area close to the head, and a turbidity maxima region in the brackish zone. As the morphology of the estuaries evolved, the tidal propagation (including …

Oyster Bag Sill Construction And Monitoring At Two Sites In Chesapeake Bay, Donna A. Milligan, C. Scott Hardaway Jr., Christine A. Wilcox, Walter I. Priest

Reports

The use of oyster shell bags as a means of shore protection along fetchlimited shorelines in Chesapeake Bay is growing. This method is an innovative use of a byproduct of the seafood industry and can provide habitat creation, water quality improvement, and shore protection. The landowner can install the bags themselves, and with the new living shoreline general permit in Virginia, these projects are easier than ever to afford and install. However, oyster shells are a limited resource that are needed for largescale oyster reef restoration with the Chesapeake Bay watershed, so determining the effectiveness of this shore protection strategy …

Impact Of Seabed Resuspension On Oxygen And Nitrogen Dynamics In The Northern Gulf Of Mexico: A Numerical Modeling Study, Julia M. Moriarty, Courtney K. Harris, Marjorie A.M. Friedrichs, Katja Fennel, Kehui Xu

VIMS Articles

Resuspension affects water quality in coastal environments by entraining seabed organic matter into the water column, which can increase remineralization, alter seabed fluxes, decrease water clarity, and affect oxygen and nutrient dynamics. Nearly all numerical models of water column biogeochemistry, however, simplify seabed and bottom boundary layer processes and neglect resuspension. Here we implemented HydroBioSed, a coupled hydrodynamic-sediment transport-biogeochemical model to examine the role of resuspension in regulating oxygen and nitrogen dynamics on timescales of a day to a month. The model was implemented for the northern Gulf of Mexico, where the extent of summertime hypoxia is sensitive to seabed …

Restoring The Eastern Oyster: How Much Progress Has Been Made In 53 Years?, Ab Hernandez, Rochelle Brumbaugh, P Fredrick, R Grizzle, Mark Luckenbach, Ch Peterson, C Angelini

VIMS Articles

Coastal ecosystem restoration is accelerating globally as a means of enhancing shoreline protection, carbon storage, water quality, fisheries, and biodiversity. Among the most substantial of these efforts have been those focused on re-establishing oyster reefs across the US Atlantic and Gulf coasts. Despite considerable investment, it is unclear how the scale of and approaches toward oyster restoration have evolved. A synthesis of 1768 projects undertaken since 1964 reveals that oyster substrate restoration efforts have primarily been concentrated in the Chesapeake Bay and the Gulf Coast, have been heavily reliant on oyster shell, and have re-established 4.5% of the reef area …

Overcoming Early Career Barriers To Interdisciplinary Climate Change Research, Christopher J. Hein, John E. Ten Hoeve, Sathya Gopalakrishnan, Et Al

VIMS Articles

Climate-change impacts are among the most serious and complex challenges facing society, affecting both natural and social systems. Addressing these requires a new paradigm of interdisciplinary collaboration which incorporates tools, techniques, and insights from across the social, natural, and engineering sciences. Yet, a wide range of intrinsic and extrinsic hurdles need to be overcome to conduct successful, integrated interdisciplinary research. The results of a bibliometric analysis and survey of early to mid-career scientists from 56 countries who were involved with the interdisciplinary DISsertations initiative for the advancement of Climate Change ReSearch (DISCCRS) emphasize the particular challenges faced by early career …

Shorescape-Level Factors Drive Distribution And Condition Of A Salt Marsh Facilitator (Geukensia Demissa), Robert E. Isdell, Donna M. Bilkovic, Carl Hershner

VIMS Articles

Ribbed mussels (Geukensia demissa) are a highly abundant bivalve filter feeder throughout the salt marshes of the U.S. Atlantic Coast. These mussels form a mutualistic relationship with smooth cordgrass Spartina alterniflora wherein the grass provides habitat and shade to the mussels, and the mussels stabilize the sediment and fertilize the grass. Salt marshes are, however, rapidly changing and eroding as humans modify the coast, and the rate of sea level rise is accelerating. In order to understand how ribbed mussels may respond to their changing habitat, we collected mussel density and distribution data from 30 marshes covering the range of …

A Climatological Dataset Of Nutrient, Chlorophyll, And Particulate Matter Distributions On The Ross Sea Continental Shelf Derived From Cruise-Based Measurements Spanning 1967 To 2016, Walker O. Smith Jr., Daniel E. Kaufman

Data

This dataset includes data used in the publication Smith and Kaufman (2018), Progress in Oceanography, which examines the temporal and spatial distributions of nutrients and particulate matter in the Ross Sea continental Shelf using cruise-based observations, and compares the resulting annual productivity estimates with previously reported satellite-based estimates. Specifically, these data represent distributions of nutrients, chlorophyll, particulate organic carbon, particulate organic nitrogen, and biogenic silica that were compiled from 42 cruises (from 1967 - 2016) to the Ross Sea continental shelf to generate a comprehensive climatological dataset for November, December, January, and February. This climatology provides a novel look at …

Future Response Of Global Coastal Wetlands To Sea-Level Rise, M. Schuerch, T. Spencer, S. Temmerman, Matthew L. Kirwan, Et Al

VIMS Articles

The response of coastal wetlands to sea-level rise during the twenty-first century remains uncertain. Global-scale projections suggest that between 20 and 90 per cent (for low and high sea-level rise scenarios, respectively) of the present-day coastal wetland area will be lost, which will in turn result in the loss of biodiversity and highly valued ecosystem services(1-3). These projections do not necessarily take into account all essential geomorphological(4-7) and socio-economic system feedbacks(8). Here we present an integrated global modelling approach that considers both the ability of coastal wetlands to build up vertically by sediment accretion, and the accommodation space, namely, the …

Stoichiometric N:P Ratios, Temperature, And Iron Impact Carbon And Nitrogen Uptake By Ross Sea Microbial Communities, Jl Spackeen, Da Bronk, Rachel E. Sipler, Em Bertrand, Da Hutchins, Ae Allen

VIMS Articles

The Southern Ocean is one of the most biologically important ecosystems on our planet. Microscopic plants, called phytoplankton, form the base of the food web in the Southern Ocean and play a direct role in regulating how much and how fast elements like nitrogen and carbon are cycled throughout the world ocean. The goal of this research was to determine how predicted changes in the environment will impact how fast phytoplankton use these elements. The conditions that we tested included elevated temperature, addition of iron, and the proportion of nitrogen to phosphorus in the seawater. These parameters were selected because …

Living Shorelines Support Nearshore Benthic Communities In Upper And Lower Chesapeake Bay, Tm Davenport, Rochelle D. Seitz, Ke Knick, N Jackson

VIMS Articles

Human population growth and sea-level rise are increasing the demand for protection of coastal property against shoreline erosion. Living shorelines are designed to provide shoreline protection and are constructed or reinforced using natural elements. While living shorelines are gaining popularity with homeowners, their ability to provide ecological services (e.g., habitat provision and trophic transfer) is not well understood, and information is needed to improve coastal and resource management decision-making. We examined benthic community responses to living shorelines in two case-study subestuaries of Chesapeake Bay using a before-after control-impact study design. At Windy Hill, a bulkhead was removed and replaced by …

Estimating Hypoxic Volume In The Chesapeake Bay Using Two Continuously Sampled Oxygen Profiles, Aaron J. Bever, Marjorie A.M. Friedrichs, Carl T. Friedrichs, Malcolm E. Scully

VIMS Articles

Low levels of dissolved oxygen (DO) occur in many embayments throughout the world and have numerous detrimental effects on biota. Although measurement of in situ DO is straightforward with modern instrumentation, quantifying the volume of water in a given embayment that is hypoxic (hypoxic volume (HV)) is a more difficult task; however, this information is critical for determining whether management efforts to increase DO are having an overall impact. This paper uses output from a three‐dimensional numerical model to demonstrate that HV in Chesapeake Bay can be estimated well with as few as two vertical profiles. In addition, the cumulative …

Role Of Sediment Resuspension On Estuarine Suspended Particulate Mercury Dynamics, Ea Seelen, Grace M. Massey, Rp Mason

VIMS Articles

Coastal sediments are an important site for transient and long-term mercury (Hg) storage, and they foster a geochemical environment optimal for Hg methylation. Therefore, efforts have been taken to constrain the role of sediments as a source of methylmercury (MeHg) to the estuarine water column. This study employed the Gust Microcosm Erosion Core system capable of quantifying particle removal from undisturbed cores under measurable shear stress conditions to assess particulate Hg and MeHg exchange between sediments and the water column. Samples were collected from organic-rich and organic-poor sediment types from the mid- and lower Delaware Bay. It was found that …

Impacts Of Atmospheric Nitrogen Deposition And Coastal Nitrogen Fluxes On Oxygen Concentrations In Chesapeake Bay, Fei Da, Marjorie A.M. Friedrichs, Pierre St-Laurent

VIMS Articles

Although rivers are the primary source of dissolved inorganic nitrogen (DIN) inputs to the Chesapeake Bay, direct atmospheric DIN deposition and coastal DIN concentrations on the continental shelf can also significantly influence hypoxia; however, the relative impact of these additional sources of DIN on Chesapeake Bay hypoxia has not previously been quantified. In this study, the estuarine‐carbon‐biogeochemistry model embedded in the Regional‐Ocean‐Modeling‐System (ChesROMS‐ECB) is used to examine the relative impact of these three DIN sources. Model simulations highlight that DIN from the atmosphere has roughly the same impact on hypoxia as the same gram‐for‐gram change in riverine DIN …

A 3d Unstructured-Grid Model For Chesapeake Bay: Importance Of Bathymetry, Fei Ye, Yinglong J. Zhang, Harry V. Wang, Marjorie A.M. Friedrichs, Isaac D. Irby, Eli Alteljevich, Arnaldo Valle-Levinson, Zhengui Wang, Hai Huang, Jian Shen, Jiabi Du

VIMS Articles

We extend the 3D unstructured-grid model previously developed for the Upper Chesapeake Bay to cover the entire Bay and its adjacent shelf, and assess its skill in simulating saltwater intrusion and the coastal plume. Recently developed techniques, including a flexible vertical grid system and a 2nd-order, monotone and implicit transport solver are critical in successfully capturing the baroclinic responses. Most importantly, good accuracy is achieved through an accurate representation of the underlying bathymetry, without any smoothing. The model in general exhibits a good skill for all hydrodynamic variables: the averaged root-mean-square errors (RMSE‟s) in the Bay are 9 cm for …

Forecasting Coastal Water Levels In Virginia, Center For Coastal Resources Management, Virginia Institute Of Marine Science

Reports

Rivers & Coast is a periodic publication of the Center for Coastal Resources Management, Virginia Institute of Marine Science. The goal of Rivers & Coast is to keep readers well informed of current scientific understanding behind key environmental issues related to watershed rivers and coastal ecosystems of the Chesapeake Bay.

Asymmetric Hillslope Erosion Following Wildfire In Fourmile Canyon, Colorado, Edward R. Abrahams, James M. Kaste, William Ouimet, David P. Dethier

Arts & Sciences Articles

Infrequent, high-magnitude events cause a disproportionate amount of sediment transport on steep hillslopes, but few quantitative data are available that capture these processes. Here we study the influence of wildfire and hillslope aspect on soil erosion in Fourmile Canyon, Colorado. This region experienced the Fourmile Fire of 2010, strong summer convective storms in 2011 and 2012, and extreme flooding in September 2013. We sampled soils shortly after these events and use fallout radionuclides to trace erosion on polar- and equatorial-facing burned slopes and on a polar-facing unburned slope. Because these radionuclides are concentrated in the upper decimeter of soil, soil …

An Updated Model For Estimating The Tmdl-Related Benefits Of Oyster Reef Restoration Harris Creek, Maryland, Usa, M. Lisa Kellogg, Mark J. Brush, Jeff C. Cornwell

Reports

In 2014, a user-friendly, web-accessible model was developed that allowed restoration practitioners and resource managers to easily estimate the TMDLrelated benefits of oyster reef (Crassostrea virginica) restoration per unit area, run restoration scenarios in Harris Creek, MD to optimize restoration planning and implementation, and calculate the benefits of the chosen plan. The model was rooted in scientifically defensible data and was readily transferrable to systems throughout the Chesapeake Bay and Eastern Shore. The model operated in five vertically well-mixed boxes along the main axis of the creek. Exchanges among creeks were computed using a tidal prism approach and were compared …

Topological Changes Of Wave Functions Associated With Hamiltonian Monodromy, C. Chen, John B. Delos

Arts & Sciences Articles

Almost everything that happens in classical mechanics also shows up in quantum mechanics when we know where to look for it. A phenomenon in classical mechanics involves topological changes in action-angle loops as a result of passage around a “monodromy circuit.” This phenomenon is known by the short name “Hamiltonian monodromy” (or, more ponderously, “nontrivial monodromy of action and angle variables in integrable Hamiltonian systems”). In this paper, we show a corresponding change in quantum wave functions: These wave functions change their topological structure in the same way that the corresponding classical action-angle loops change.

Role Of Baroclinic Processes On Flushing Characteristics In A Highly Stratified Estuarine System, Mobile Bay, Alabama, Jiabi Du, Kyeong Park, Jian Shen, Et Al

VIMS Articles

Flushing of an estuary quantifies the overall water exchange between the estuary and coastal ocean and is crucially important for water quality as well as biological and geochemical processes within the system. Flushing times and freshwater age in Mobile Bay were numerically calculated under realistic and various controlled forcing conditions. Their responses to external forcing were explained by the three‐dimensional characteristics of general circulation in the system. The flushing time ranges from 10 to 33 days under the 25th–75th percentile river discharges, nearly half of the previous estimates based on barotropic processes only, suggesting the important contribution of baroclinic processes. …