Physical Sciences and Mathematics Commons^™

The Magmatic Origin Of The Columbia River Gorge, Usa, Nathaniel Klema, Leif Karlstrom, Charles Cannon, Chengxin Jiang, Jim O'Connor, Ray E. Wells, Brandon Schmandt

Geology Faculty Publications and Presentations

Along subduction zones, high-relief topography is associated with sustained volcanism parallel to the plate margin. However, the relationship between magmatism and mountain building in arcs is poorly understood. Here, we study patterns of surface deformation and correlated fluvial knickpoints in the Columbia River Gorge to link long-term magmatism to the uplift and ensuing topographic development of the Cascade Range. An upwarped paleochannel exposed in the walls of the Gorge constrains unsteady deep magma flux, the ratio of intrusive to extrusive magmatic contributions to topography, and the impact of magmatism on Columbia River incision since 3.5 million years ago. Geophysical data …

How Are Oregon's Rural Indigenous Communities Overcoming Water Access Issues?, Tyren John Thompson

Dissertations and Theses

This study investigates how water insecurity affects Indigenous communities in Grand Ronde, Warm Springs, and Umatilla, Oregon, through loss of clean drinking water, access to culturally significant foods, and exposure to pollution. Each community offers innovative solutions drawing on their Indigenous knowledge to overcome water supply challenges. Communities with more resources are better equipped to cope with water insecurity and environmental degradation.

Tiny Drifters Amidst Global Change: Examining Environmental Drivers, Trophic Impacts, And Management Strategies Of Estuarine Plankton Communities In The Anthropocene, Taylor Nicole Dodrill

Dissertations and Theses

Plankton productivity supports estuarine food webs, and has been tied to the success of fisheries, macroinvertebrates, and cultured shellfish yields. Climate change and alterations to nutrient loads are thought to be influencing plankton assemblages, with toxin-producing harmful algal blooms (HABs) on the rise and nutritional quality of plankton declining globally. These shifts in plankton communities may contribute to low biomass yields and toxin-based closures of important fisheries. The objectives of this dissertation are to identify environmental drivers, trophic impacts, and management strategies to understand and respond to changing estuarine plankton communities. To address these objectives, I used a combination of …

An Efficient And Chemoselective Method To Generate Arynes, Bryan Metze, Riley A. Roberts, Aleksandra Nilova, David R. Stuart

Chemistry Faculty Publications and Presentations

Arynes hold immense potential as reactive intermediates in organic synthesis as they engage in a diverse range of mechanistically distinct chemical reactions. However, the poor functional group compatibility of generating arynes or their precursors has stymied their widespread use. Here, we show that generating arynes by deprotonation of an arene and elimination of an “onium” leaving group is mild, efficient and broad in scope. This is achieved by using aryl(TMP)iodonium salts (TMP = 2,4,6-trimethoxyphenyl) as the aryne precursor and potassium phosphate as the base, and a range of arynophiles are compatible. Additionally, we have performed the first quantitative analysis of …

Province-Wide Tapping Of A Shallow, Variably Depleted, And Metasomatized Mantle To Generate Earliest Flood Basalt Magmas Of The Columbia River Basalt, Northwestern Usa, Martin J. Streck, Luke James Fredenberg, Lena M. Fox, Emily B. Cahoon, Mary J. Mass

Geology Faculty Publications and Presentations

The Miocene Columbia River Basalt Group (CRBG) of the Pacific Northwest of the United States is the world’s youngest and smallest large igneous province. Its earliest formations are the Imnaha, Steens, and now the Picture Gorge Basalt (PGB), and they were sourced from three different dike swarms exposed from SE Washington to Nevada to northcentral Oregon. PGB is often viewed to be distinct from the other formations, as its magmas are sourced from a shallow, relatively depleted, and later subduction-induced metasomatized mantle, along with its young stratigraphic position. It has long been known that the lowermost American Bar flows (AB1&2) …

The Effects Of Salt Marsh Restoration On The Hydrology Of Salt Marsh Channels, Isis Kontas

University Honors Theses

Salt marshes produce many ecosystem services, from water purification to protection from hurricanes. Despite their benefits, salt marshes have been impacted negatively by human activities. There are many salt marsh restoration projects that intend to bring back all ecological functions and services. Quantifiable measurements are needed to evaluate the effectiveness of such restoration efforts. Earlier work by Reagan Thomas demonstrated what happens to the hydrology of salt marsh channels when they are adjacent to restored salt marshes. This study builds on Thomas’ work and uses the sinuosity of channels as a quantitative, representative metric of salt marsh hydrology restoration effectiveness. …

Estimating Ocean Observation Impacts On Coupled Atmosphere-Ocean Models Using Ensemble Forecast Sensitivity To Observation (Efso), Chu-Chun Chang, Tse-Chun Chen, Eugenia Kalnay, Cheng Da, Safa Mote

Mathematics and Statistics Faculty Publications and Presentations

Ensemble Forecast Sensitivity to Observation (EFSO) is a technique that can efficiently identify the beneficial/detrimental impacts of every observation in ensemble-based data assimilation (DA). While EFSO has been successfully employed on atmospheric DA, it has never been applied to ocean or coupled DA due to the lack of a suitable error norm for oceanic variables. This study introduces a new density-based error norm incorporating sea temperature and salinity forecast errors, making EFSO applicable to ocean DA for the first time. We implemented the oceanic EFSO on the CFSv2-LETKF and investigated the impact of ocean observations under a weakly coupled DA …

Coastal Wetland Restoration Through The Lens Of Odum's Theory Of Ecosystem Development, Friedrich W. Keppeler, Annette S. Engel, Linda M. Hooper-Bùi, Paola C. López-Duarte, Charles W. Martin, Jill A. Olin, Katelyn J. Lamb, Michael J. Polito, Nancy N. Rabalais, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

Advancing ecological restoration assessments requires a more detailed consideration of species interactions and ecosystem processes. Most restoration projects rely on a few metrics not always directly linked with ecological theory. Here, we used Odum's theory of ecosystem development to assess and compare the ecosystem structure and services of created marshes (4–6 years old) with preexisting, reference marshes in a brackish water region of the Mississippi River Delta. We built ecosystem models for created and reference marshes that integrated large datasets of stomach contents, stable isotopes, and taxa abundances. Despite strong resemblance in community structure, created marshes were at an earlier …

How Beavers (Castor Canadensis) Affect Habitat Availability For Two Native Oregon Turtles: Actinemys Marmorata And Chrysemys Picta Bellii, Rodé Krige

University Honors Theses

Oregon is home to two native freshwater turtle species: the northwestern pond turtle and the western painted turtle. Both turtles are Oregon conservation strategy species with a status rating of sensitive, indicating declining populations. Oregon’s decline in these turtle’s populations is thought to be predominantly due to loss and degradation of habitat that results from development and urbanization. Beavers’ ability to dam streams and create ponds may be creating habitat usable by turtles, but the relationship is under-studied. This study assessed water temperature, basking habitat, and overall turtle habitat suitability at beaver-dammed and control ponds in Portland, Oregon. Average basking …

Preventing Inferences Through Data Dependencies On Sensitive Data, Primal Pappachan, Shufan Zhang, Xi He, Sharad Mehrotra

Computer Science Faculty Publications and Presentations

Simply restricting the computation to non-sensitive part of the data may lead to inferences on sensitive data through data dependencies. Inference control from data dependencies has been studied in the prior work. However, existing solutions either detect and deny queries which may lead to leakage – resulting in poor utility, or only protects against exact reconstruction of the sensitive data – resulting in poor security. In this paper, we present a novel security model called full deniability. Under this stronger security model, any information inferred about sensitive data from non-sensitive data is considered as a leakage. We describe algorithms for …

Parameterized Complexity Of Feature Selection For Categorical Data Clustering, Sayan Bandyapadhyay, Fedor V. Fomin, Petr A. Golovach, Kirill Simonov

Computer Science Faculty Publications and Presentations

We develop new algorithmic methods with provable guarantees for feature selection in regard to categorical data clustering. While feature selection is one of the most common approaches to reduce dimensionality in practice, most of the known feature selection methods are heuristics. We study the following mathematical model. We assume that there are some inadvertent (or undesirable) features of the input data that unnecessarily increase the cost of clustering. Consequently, we want to select a subset of the original features from the data such that there is a small-cost clustering on the selected features. More precisely, for given integers ℓ (the …

Gated Recurrent Units For Blockage Mitigation In Mmwave Wireless, Ahmed H. Almutairi, Alireza Keshavarz-Haddad, Ehsan Aryafar

Computer Science Faculty Publications and Presentations

Millimeter-Wave (mmWave) communication is susceptible to blockages, which can significantly reduce the signal strength at the receiver. Mitigating the negative impacts of blockages is a key requirement to ensure reliable and high throughput mmWave communication links. Previous research on blockage mitigation has introduced several model and protocol based blockage mitigation solutions that focus on one technique at a time, such as handoff to a different base station or beam adaptation to the same base station. In this paper, we address the overarching problem: what blockage mitigation method should be employed? and what is the optimal sub-selection within that method? To …

The Discovery Of Diverse Picophytoplankton Populations In The Columbia And Willamette Rivers Using Flow Cytometry, Kylee Brevick

Chemistry Undergraduate Departmental Honors Theses

As important primary producers, picophytoplankton determine the flow of carbon and energy in aquatic ecosystems. Picocyanobacteria are one picophytoplankton group known to be dominant in oceans and lakes, but they are still poorly understood in river systems. This project examined picophytoplankton communities in two distinct river systems: the Columbia and Willamette Rivers in Portland, Oregon. I aimed to characterize and quantify the picophytoplankton populations in the context of the environmental conditions of the two rivers. I used flow cytometry to detect cells based on their relative size and pigment fluorescence. I sampled nearly weekly for ten months to capture population …

The Negative Stigma Surrounding Mathematics, Marissa A. Greisen

PSU McNair Scholars Online Journal

There is a negative stigma that surrounds mathematics in our education system. It is important to bring notice to this for the benefit of future students. There is a lot of research claiming that math is looked down on, but they do not answer why, or what we can do to fix it. Why is there a greater negative stigma around math and not other subjects? What roles to teachers, parents, and peers play in this stigma? In this article, I created a survey for people to answer questions regarding their opinion on math, who they believe typically does well …

Energy Auction With Non-Relational Persistence, Michael Ramez Howard

Dissertations and Theses

As the current landscape for electric vehicles changes, options for remote charging are expanding to keep up. In the United States alone, sales of electric vehicles grew 85% from 2020 until hitting 450,000 units by the end of 2021. While these growing sales are encouraging, commercial charging stations have a long way to go before they are as ubiquitous as gasoline stations are today. The peer-to-peer energy auction helps fill the gap in underserved areas by allowing private homeowners to share their charging facilities with other electric vehicle drivers. The auction framework wraps existing charging outlets with a Cloud-connected microcontroller. …

Forest Generating Functions Of Directed Graphs, Ewan Joaquin Kummel

Dissertations and Theses

A spanning forest polynomial is a multivariate generating function whose variables are indexed over both the vertex and edge sets of a given directed graph. In this thesis, we establish a general framework to study spanning forest polynomials, associating them with a generalized Laplacian matrix and studying its properties. We introduce a novel proof of the famous matrix-tree theorem and show how this extends to a parametric generalization of the all-minors matrix-forest theorem. As an application, we derive explicit formulas for the recently introduced class of directed threshold graphs.

We prove that multivariate forest polynomials are, in general, irreducible and …

Tidal Bed Stress Asymmetry And Sediment Transport In Estuaries, Austin Scott Hudson

Dissertations and Theses

Rivers and estuaries provide numerous ecological, economic, and cultural resources. The value of these resources is greatly influenced by sediment transport processes, which can be affected by human activities and climate variability. A key driver of sediment transport in tidal rivers and estuaries is tidal asymmetry of velocity and bed stress, which can manifest from both non-linear tidal interactions and linear interactions among astronomical tidal constituents.

In this study, an analytical framework is developed to examine and describe the dynamics of bed stress asymmetry in semidiurnal, diurnal, and mixed-tide estuaries (Chapter 1). While tidal velocity asymmetry has been previously analyzed, …

Cognitive Engagement During Group Learning Activities In Chemistry Courses: An Analysis Of Student Discourse, Safaa Youssef El-Mansy

Dissertations and Theses

As educators, our goal is to help our students be successful, but in order to accomplish this, we need to understand what factors contribute to student success. One factor, small-group active learning, has been correlated to improved academic outcomes; however, the magnitude of this improvement can vary across different courses, different types of group work, and even across courses that use the same group work structure. Therefore, it is important to understand what aspects of group work contribute to its effectiveness. The work presented in this dissertation investigated one specific aspect: students’ cognitive engagement. This was done by analyzing the …

An Overview Of Elements And Relations: Aspects Of A Scientific Metaphysics, Martin Zwick

Systems Science Faculty Publications and Presentations

A talk on my book, Elements and Relations: Aspects of a Scientific Metaphysics. Book description:

This book develops the core proposition that systems theory is an attempt to construct an “exact and scientific metaphysics,” a system of general ideas central to science that can be expressed mathematically. Collectively, these ideas would constitute a non-reductionist “theory of everything” unlike what is being sought in physics. Inherently transdisciplinary, systems theory offers ideas and methods that are relevant to all of the sciences and also to professional fields such as systems engineering, public policy, business, and social work. To demonstrate the generality …

Evidence Of Transboundary Movement Of Chemicals From Mexico To The U.S. In Tijuana River Estuary Sediments, Flannery Mclamb, Kesten Bozinovic, Zuying Feng, Damian Shea, Miguel F. Vasquez, Chris Stransky, Richard M. Gersberg, Goran Bozinovic, Multiple Additional Authors

Center for Life in Extreme Environments Publications

The Tijuana River Estuary (TRE) has been a public health hazard and point of contention between the United States and Mexico for decades, with sources of pollution on both sides of the border. The goal of our study is to determine the presence and dynamics of chemical contamination in the TRE. We sampled sediment from four TRE locations in the U.S. during stable dry conditions and immediately after a wet weather period. Organic chemicals were initially screened with non-targeted analysis using gas chromatography high-resolution mass spectrometry (GC/HRMS) that tentatively identified 6978 chemicals in the NIST 20 database. These tentative identifications …

Using Biometrics, Behavioral Observations, And Multiple Molecular Techniques To Assess The Impacts Of Changes In Temperature And Salinity On The Common Bay Mussel (Mytilus Trossulus), Casey Martin

Dissertations and Theses

The intertidal zone is a place of rapid and frequent change that is home to a variety of creatures who are essential to the integrity of the habitat. Mussels are robust sessile bivalves that anchor to the rocks of the intertidal. The prominent species on the Oregon Coast, the Common Bay Mussel (Mytilus trossulus), plays an essential role as a coastal food source, water column filter, and barrier to prevent erosion due to wave action. Mytilus trossulus withstands daily shifts in temperature, salinity, and tide, as well as seasonal changes. Global climate change due to excess carbon emissions …

Dependence Among Order Statistics For Time-Transformed Exponential Models, Subhash C. Kochar, Fabio Spizzichino

Mathematics and Statistics Faculty Publications and Presentations

Let X₁, ..., X_n be a random vector distributed according to a time-transformed exponential model. This is a special class of exchangeable models, which, in particular, includes multivariate distributions with Schur-constant survival functions. Let for 1 i n, X_i:n denote the corresponding ith-order statistic. We consider the problem of comparing the strength of dependence between any pair of X_i’s with that of the corresponding order statistics. It is in particular proved that for m = 2, ..., n, the dependence of X2:m on X1:m is more than that of X₂ on X …

Calorimetric Analysis Using Dna Thermal Stability To Determine Protein Concentration, Matthew W. Eskew, Patrick Reardon, Albert S. Benight

Chemistry Faculty Publications and Presentations

It was recently reported for two globular proteins and a short DNA hairpin in NaCl buffer that values of the transition heat capacities, Cp,DNA and Cp,PRO for equal concentrations (mg/mL) of DNA and proteins, are essentially equivalent (differ by less than 1%). Additional evidence for this equivalence is presented that reveals this phenomenon does not depend on DNA sequence, buffer salt, or Tm. Sequences of two DNA hairpins were designed to confer a near 20°C difference in their Tm’s. For the molecules, in NaCl and CsCl buffer the evaluated Cp,PRO and C …

Cfa-Treated Mice Induce Hyperalgesia In Healthy Mice Via An Olfactory Mechanism, Yangmiao Zhang, Wentai Luo, Maryt M. Heinricher, Andrey E. Ryabinin

Chemistry Faculty Publications and Presentations

Background

Social interactions with subjects experiencing pain can increase nociceptive sensitivity in observers, even without direct physical contact. In previous experiments, extended indirect exposure to soiled bedding from mice with alcohol withdrawal-related hyperalgesia enhanced nociception in their conspecifics. This finding suggested that olfactory cues could be sufficient for nociceptive hypersensitivity in otherwise untreated animals (also known as “bystanders”).

Aim

The current study addressed this possibility using an inflammation-based hyperalgesia model and long- and short-term exposure paradigms in C57BL/6J mice.

Materials & Method

Adult male and female mice received intraplantar injection of complete Freund's adjuvant (CFA) and were used as stimulus …

When Communities Face Drinking Water Crises, Bottled Water Is A 'Temporary' Solution That Often Lasts Years--And Worsens Inequality, Daniel Jaffee

Sociology Faculty Publications and Presentations

As a sociologist, I study the social and environmental effects of the rapid growth of bottled-water consumption in the U.S. and beyond, and how it is linked to distrust of public tap water. In my new book, “Unbottled,” one chapter examines how these dynamics played out in Flint. As its example shows, communities can end up relying on bottled water – often at great expense – for years after a crisis.

Parallel Element-Based Algebraic Multigrid For H (Curl) And H (Div) Problems Using The Parelag Library, Delyan Z. Kalchev, Panayot S. Vassilevski, Umberto Villa

Mathematics and Statistics Faculty Publications and Presentations

This paper presents the use of element-based algebraic multigrid (AMGe) hierarchies, implemented in the Parallel Element Agglomeration Algebraic Multigrid Upscaling and Solvers (ParELAG) library, to produce multilevel preconditioners and solvers for H (curl) and H (div) formulations. ParELAG constructs hierarchies of compatible nested spaces, forming an exact de Rham sequence on each level. This allows the application of hybrid smoothers on all levels and the Auxiliary-Space Maxwell Solver or the Auxiliary-Space Divergence Solver on the coarsest levels, obtaining complete multigrid cycles. Numerical results are presented, showing the parallel performance of the proposed methods. As a part of the exposition, this …

Effective Entity Augmentation By Querying External Data Sources, Christopher Buss, Jasmin Mousavi, Mikhail Tokarev, Arash Termehchy, David Maier, Stefan Lee

Computer Science Faculty Publications and Presentations

Users often want to augment and enrich entities in their datasets with relevant information from external data sources. As many external sources are accessible only via keyword-search interfaces, a user usually has to manually formulate a keyword query that extract relevant information for each entity. This approach is challenging as many data sources contain numerous tuples, only a small fraction of which may contain entity-relevant information. Furthermore, different datasets may represent the same information in distinct forms and under different terms (e.g., different data source may use different names to refer to the same person). In such cases, it is …

Auxiliary Features-Guided Super Resolution For Monte Carlo Rendering, Qiqi Hou, Feng Liu

Computer Science Faculty Publications and Presentations

This paper investigates super-resolution to reduce the number of pixels to render and thus speed up Monte Carlo rendering algorithms. While great progress has been made to super-resolution technologies, it is essentially an ill-posed problem and cannot recover high-frequency details in renderings. To address this problem, we exploit high-resolution auxiliary features to guide super-resolution of low-resolution renderings. These high-resolution auxiliary features can be quickly rendered by a rendering engine and at the same time provide valuable high-frequency details to assist super-resolution. To this end, we develop a cross-modality transformer network that consists of an auxiliary feature branch and a low-resolution …

Investigating Evidence In Support Of Validity And Reliability For Data Collected With The Meaningful Learning In The Laboratory Instrument (Mlli), Elizabeth Vaughan, A. Montoya-Cowan, Jack Barbera

Chemistry Faculty Publications and Presentations

The Meaningful Learning in the Laboratory Instrument (MLLI) was designed to measure students’ expectations before and after their laboratory courses and experiences. Although the MLLI has been used in various studies and laboratory environments to investigate students’ cognitive and affective laboratory expectations, the authors of the instrument reported a discrepancy between the intended factor structure of the MLLI and the factor structure suggested by the data collected in preliminary studies. Therefore, the aim of this study was to investigate the validity and reliability evidence related to data collected with the MLLI, especially that related to structural validity. Evidence to support …

Forest Fire Effects On Snow Storage And Melt Across Scales Of Forest Recovery In The Western Oregon Cascades, Megan Nicole Guinn

Dissertations and Theses

Snow is the largest component of water storage in the western United States, it serves as a key moisture source for forested ecosystems and is fundamentally linked to streamflow and nutrient cycling. Snow is vulnerable to climatic warming, and a key consequence of declining mountain snowpack is the escalation in wildfire frequency, extent, intensity, and duration across the seasonal snow zone. Fire modifies the spatial extent of snow in watersheds, reducing snow water storage and timing of melt across burned forests. Forested mountain ecosystems and water supplies are facing shifts in their structure, function, and succession. Previous research has focused …