Physical Sciences and Mathematics Commons^™

On The Interpretation Of Caribbean Paleo-Temperature Reconstructions During The Younger Dryas, Xiuquan Wan, Ping Chang, R. Saravanan, Rong Zhang, Matthew W. Schmidt

OES Faculty Publications

A conundrum exists regarding whether the sea-surface temperatures decreased or increased over the southern Caribbean and the western Tropical Atlantic region during the Younger Dryas when the North Atlantic cooled substantially and the Atlantic thermohaline circulation was weakened significantly. Despite the proximity of core locations, some proxy reconstructions record a surface cooling, while others indicate a warming. We suggest that this seemingly paradoxical finding may, at least partially, be attributed to the competing physical processes that result in opposing signs of temperature change in the region in response to weakened North Atlantic meridional overturning circulation. Our coupled ocean-atmosphere model experiments …

Electrospray And Photoionization Mass Spectrometry For The Characterization Of Organic Matter In Natural Waters: A Qualitative Assessment, William C. Hockaday, Jeremiah M. Pucell, Alan G. Marshall, Jeffery A. Baldock, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

Fourier-transform ion cyclotron resonance mass spectrometry (MS) has demonstrated potential to revolutionize the fields of limnology and chemical oceanography by identifying the individual molecular components of organic matter in natural waters. The use of MS for this purpose is made possible by the electrospray technique which successfully ionizes polar, nonvolatile organic molecules. Another recently developed ion source, atmospheric pressure photoionization (APPI), extends MS capabilities to less polar molecules. This article presents early results on the application of APPI MS to natural organic matter. We compare APPI MS and electrospray MS data for dissolved organic matter from Lake Drummond (Virginia, USA). …

Object Reuse And Exchange, Michael L. Nelson, Carl Lagoze, Herbert Van De Sompel, Pete Johnston, Robert Sanderson, Simeon Warner, Jürgen Sieck (Ed.), Michael A. Herzog (Ed.)

Computer Science Faculty Publications

The Open Archives Object Reuse and Exchange (OAI-ORE) project defines standards for the description and exchange of aggregations of Web resources. The OAI-ORE abstract data model is conformant with the Architecture of the World Wide Web and leverages concepts from the Semantic Web, including RDF descriptions and Linked Data. In this paper we provide a brief review of a motivating example and its serialization in Atom.

Correlation Of Music Charts And Search Engine Rankings, Martin Klein, Olena Hunsicker, Michael Nelson

Computer Science Faculty Publications

We investigate the question whether expert rankings of real-world entities correlate with search engine (SE) rankings of corresponding web resources. We compare Billboards "Hot 100 Airplay" music charts with SE rankings of associated web resources. Out of nine comparisons we found two strong, two moderate, two weak and one negative correlation. The remaining two comparisons were inconclusive.

Multicast Encryption Infrastructure For Security In Sensor Networks, Richard R. Brooks, Brijesh Pillai, Matthew Pirretti, Michele C. Weigle

Computer Science Faculty Publications

Designing secure sensor networks is difficult. We propose an approach that uses multicast communications and requires fewer encryptions than pairwise communications. The network is partitioned into multicast regions; each region is managed by a sensor node chosen to act as a keyserver. The keyservers solicit nodes in their neighborhood to join the local multicast tree. The keyserver generates a binary tree of keys to maintain communication within the multicast region using a shared key. Our approach supports a distributed key agreement protocol that identifies the compromised keys and supports membership changes with minimum system overhead. We evaluate the overhead of …

Evaluating Multicore Algorithms On The Unified Memory Model, John E. Savage, Mohammad Zubair

Computer Science Faculty Publications

One of the challenges to achieving good performance on multicore architectures is the effective utilization of the underlying memory hierarchy. While this is an issue for single-core architectures, it is a critical problem for multicore chips. In this paper, we formulate the unified multicore model (UMM) to help understand the fundamental limits on cache performance on these architectures. The UMM seamlessly handles different types of multiple-core processors with varying degrees of cache sharing at different levels. We demonstrate that our model can be used to study a variety of multicore architectures on a variety of applications. In particular, we use …

Light Scattering In Ultracold High Density Rubidium Vapor, Salim Balik

Physics Theses & Dissertations

Recent developments in laser cooling and trapping opened the door to a world full of new opportunities for research in atomic, molecular and optical physics as well as condensed matter physics. It became possible to do experiments under conditions that are hard to achieve in condensed matter systems but recently have been observed in atomic systems. Bose Einstein Condensation, the Mott insulator transition, and superfluidity are examples of such achievements. Another considerable interest to both condensed matter and atomic physics is Anderson localization of light. The localization phenomenon is named after P. W. Anderson who suggested the possibility of localization …

Neutron Structure Functions Measured With Spectator Tagging, Svyatoslav Tkachenko

Physics Theses & Dissertations

We know much less about the neutron than the proton due to the absence of free neutron targets. Neutron information has to be extracted from data on nuclear targets like deuterium. This requires corrections for off-shell and binding effects which are not known from first principles and therefore are model-dependent. As a consequence, the same data can be interpreted in different ways, leading to different conclusions about important questions such as the value of the d/u quark ratio at large momentum fraction x. The Barely Off-shell NUcleon Structure (BONUS) experiment at Jefferson Lab addressed this problem by tagging spectator protons …

Peptide Hydrolysis And The Uptake Of Dipeptides By Phytoplankton, Margaret R. Mulholland, Cindy Lee

OES Faculty Publications

Rates of peptide hydrolysis (using the fluorescent substrate, lucifer yellow anhydride-labeled tetra-alanine) and dipeptide uptake (using dually labeled, ¹⁵N and ¹³C, dialanine) were measured in phytoplankton cultures and in natural populations during algal blooms dominated by one or two taxa. During most sampling events, both peptide hydrolysis and dipeptide uptake were greatest in the size fraction containing the dominant phytoplankter, suggesting that phytoplankton contribute substantially to or may even dominate observed extracellular peptide hydrolysis and dipeptide uptake in the environment. These are the first data suggesting that dipeptides may be taken up directly by phytoplankton and this may …

Cross-Basin Comparison Of Phosphorus Stress And Nitrogen Fixation In Trichodesmium, Annette M. Hynes, P. Dreux Chappell, Sonya T. Dyhrman, Scott C. Doney, Eric A. Webb

OES Faculty Publications

We investigated the phosphorus (P) status and N₂ fixation rates of Trichodesmium populations from the North Pacific, western South Pacific, and western North Atlantic. Colonies of Trichodesmium were collected and analyzed for endogenous alkaline phosphatase (AP) activity using enzyme-labeled fluorescence ( ELF) and for nitrogenase activity using acetylene reduction. AP hydrolyzes dissolved inorganic phosphate (DIP) from dissolved organic phosphorus and is active in Trichodesmium colonies experiencing P stress. Across multiple stations in the subtropical North and South Pacific, there was low to moderate ELF labeling in Trichodesmium, although labeling was present in other taxa. In contrast, Trichodesmium ELF …

Potential Export Of Unattached Benthic Macroalgae To The Deep Sea Through Wind Driven Langmuir Circulation, H. M. Dierssen, Richard C. Zimmerman, Lisa A. Drake, David J. Burdige

OES Faculty Publications

Carbon export to the deep sea is conventionally attributed to the sinking of open ocean phytoplankton. Here, we report a Langmuir supercell event driven by high winds across the shallow Great Bahama Bank that organized benthic non-attached macroalgae, Colpomenia sp., into visible windrows on the seafloor. Ocean color satellite imagery obtained before and after the windrows revealed a 588 km² patch that rapidly shifted from highly productive macroalgae to bare sand. We assess a number of possible fates for this macroalgae and contend that this event potentially transported negatively buoyant macroalgae to the deep Tongue of the Ocean …

Influence Of Irradiance And Iron On The Growth Of Colonial Phaeocystic Antarctica: Implications For Seasonal Bloom Dynamics In The Ross Sea, Antarctica, Nathan S. Garcia, Peter N. Sedwick, Giacomo R. Ditullio

OES Faculty Publications

Laboratory culture experiments were used to investigate the growth rate of colonial Phaeocystis anarctica as a function of irradiance and dissolved iron concentration. The experiments were conducted with a P. antarctica strain isolated from the southern Ross Sea, Antarctica, and made use of natural, low-iron (P. antarctica attained an average maximum cell-specific growth rate of 0.37 d^-1at an irradiance of 68 μE m^-2s^-1, above which growth rates decreased to 0.27 d^-1 at an irradiance of 314 μE m^-2s^-1. The dependence of growth rate on ambient dissolved iron concentration was …

Understanding How Disease And Environment Combine To Structure Resistance In Estuarine Bivalve Populations, Eileen E. Hofmann, David Bushek, Susan E. Ford, Ximing Guo, Dale Haidvogel, Dennis Hedgecock, John M. Klinck, Coren Milbury, Diego Narvaez, Eric Powell, Yongping Wang, Zhiren Wang, Liusuo Zhang

CCPO Publications

Delaware Bay oyster (Crassostrea virginica) populations are influenced by two lethal parasites that cause Dermo and MSX diseases. As part of the US National Science Foundation Ecology of Infectious Diseases initiative, a program developed for Delaware Bay focuses on understanding how oyster population genetics and population dynamics interact with the environment and these parasites to structure he host populations, and how these interactions might modified by climate change. Laboratory and field studies undertaken during this program include identifying genes related to MSX and Dermo disease resistance, potential regions for refugia and the mechanisms that allow them to exist, …

Enso And Variability Of The Antarctic Peninsula Pelagic Marine Ecosystem, Valerie J. Loeb, Eileen E. Hofmann, John M. Klinck, Osmund Holm-Hansen, Warren B. White

CCPO Publications

The West Antarctic Peninsula region is an important source of Antarctic krill (Euphausia superba) in the Southern Ocean. From 1980-2004 abundance and concentration of phytoplankton and zooplankton, krill reproductive and recruitment success and seasonal sea ice extent here were significantly correlated with the atmospheric Southern Oscillation Index and exhibited three- to five-year frequencies characteristic of El Nino-Southern Oscillation (ENSO) variability. This linkage was associated with movements of the Southern Antarctic Circumpolar Current Front and Boundary, a changing influence of Antarctic Circumpolar Current and Weddell Sea waters, and eastward versus westward flow and mixing processes that are consistent with forcing by …

Profiles Of Ocean Surface Heating (Posh): A New Model Of Upper Ocean Diurnal Warming, Chelle L. Gentemann, Peter J. Minnett, Brian Ward

CCPO Publications

Shipboard radiometric measurements of diurnal warming at the ocean surface and profiles through the diurnal thermocline were utilized to assess the temporal and vertical variability and to develop a new physics-based model of near-surface warming. The measurements and modeled diurnal warming were compared, with the goal of comprehensively evaluating differences between the data and model results. On the basis of these results, the diurnal model was refined while attempting to maintain agreement with the measurements. Simplified bulk models commonly do not provide information on the vertical structure within the warm layer, but this new model predicts the vertical temperature profile …

Pressure-Driven Transport Of Particles Through A Converging-Diverging Microchannel, Ye Ai, Sang W. Joo, Xiangchun Xuan, Shizhi Qian

Mechanical & Aerospace Engineering Faculty Publications

Pressure-driven transport of particles through a symmetric converging-diverging microchannel is studied by solving a coupled nonlinear system, which is composed of the Navier-Stokes and continuity equations using the arbitrary Lagrangian-Eulerian finite-element technique. The predicted particle translation is in good agreement with existing experimental observations. The effects of pressure gradient, particle size, channel geometry, and a particle's initial location on the particle transport are investigated. The pressure gradient has no effect on the ratio of the translational velocity of particles through a converging-diverging channel to that in the upstream straight channel. Particles are generally accelerated in the converging region and then …

A Two-Population Insurgency In Colombia: Quasi-Predator-Prey Models - A Trend Towards Simplicity, John A. Adam, John A. Sokolowski, Catherine M. Banks

Mathematics & Statistics Faculty Publications

A sequence of analytic mathematical models has been developed in the context of the "low-level insurgency" in Colombia, from 1993 to the present. They are based on generalizations of the two-population "predator-prey" model commonly applied in ecological modeling, and interestingly, the less sophisticated models yield more insight into the problem than the more complicated ones, but the formalism is available to adapt the model "upwards" in the event that more data becomes available, or as the situation increases in complexity. Specifically, so-called "forcing terms" were included initially in the coupled differential equations to represent the effects of government policies towards …

Design Optimization Of Superconducting Parallel-Bar Cavities, Subashini De Silva, Jean R. Delayen

Physics Faculty Publications

The parallel-bar structure is a new superconducting geometry whose features and properties may have significant advantages over conventional superconducting deflecting and crabbing cavities for a number of applications. Jefferson Lab is in need for a 499 MHz, 11 GeV rf separator as part of its 12 GeV upgrade program. We report on design optimization studies performed todate for this and other applications.

Photodisintegration Of 4He Into P+T, Clas Collaboration, M. J. Amaryan, S. L. Careccia, G. E. Dodge, C. E. Hyde, S. E. Kuhn, M. Mayer, C. S. Nepali, M. R. Niroula, H. Seraydaryan, S. Tkachenko, L.B. Weinstein, J. Zhang

Physics Faculty Publications

The two-body photodisintegration of 4He into a proton and a triton has been studied using the CEBAF Large-Acceptance Spectrometer (CLAS) at the Thomas Jefferson National Accelerator Facility. Real photons produced with the Hall-B bremsstrahlung-tagging system in the energy range from 0.35 to 1.55 GeV were incident on a liquid ⁴He target. This is the first measurement of the photodisintegration of ⁴He above 0.4 GeV. The differential cross sections for the γ ⁴He →pt reaction were measured as a function of photon-beam energy and proton-scattering angle and are compared with the latest model calculations by J.-M. Laget. At …

Conformal Kernel For The Next-To-Leading-Order Bfkl Equation In 𝒩 = 4 Super Yang-Mills Theory, Ian Balitsky, Giovanni A. Chirilli

Physics Faculty Publications

Using the requirement of Möbius invariance of 𝒩 = 4 super Yang-Mills amplitudes in the Regge limit, we restore the explicit form of the conformal next-to-leading-order Balitsky-Fadin-Kuraev-Lipatov (BFKL) kernel out of the eigenvalues known from the forward next-to-leading-order BFKL result.

Nlo Evolution Of Color Dipoles In N=4sym, Ian Balitsky, Giovanni A. Chrilli

Physics Faculty Publications

High-energy behavior of amplitudes in a gauge theory can be reformulated in terms of the evolution of Wilson-line operators. In the leading logarithmic approximation it is given by the conformally invariant BK equation for the evolution of color dipoles. In QCD, the next-to-leading order BK equation has both conformal and non-conformal parts, the latter providing the running of the coupling constant. To separate the conformally invariant effects from the running-coupling effects, we calculate the NLO evolution of the color dipoles in the conformal N = 4 SYM theory. We define the "composite dipole operators" with the rapidity cutoff preserving conformal …

Measurement Of Direct Fₒ(980) Photoproduction On The Proton, K. P. Adhikari, H. Bagdasaryan, S. Bültmann, S. L. Careccia, K. V. Dharmawardane, G. E. Dodge, N. Kalantarians, A. Klein, A.V. Klimenko, S. E. Kuhn, J. Lanchiet, M. R. Niroula, J. Zhang

Physics Faculty Publications

We report on the results of the first measurement of exclusive f₀(980) meson photoproduction on protons for E_γ = 3.0–3.8  GeV and −t = 0.4–1.0  GeV² . Data were collected with the CLAS detector at the Thomas Jefferson National Accelerator Facility. The resonance was detected via its decay in the π⁺π⁻ channel by performing a partial wave analysis of the reaction γp→pπ⁺π⁻ . Clear evidence of the f₀(980) meson was found in the interference between P and S waves at M _π+π− ∼1  GeV. The S -wave differential …

Gas-Kinetic Schemes For Direct Numerical Simulations Of Compressible Homogeneous Turbulence, Wei Liao, Yan Peng, Li-Shi Luo

Mathematics & Statistics Faculty Publications

We apply the gas-kinetic scheme (GKS) for the direct numerical simulations (DNSs) of compressible decaying homogeneous isotropic turbulence (DHIT). We intend to study the accuracy, stability, and efficiency of the gas-kinetic scheme for DNS of compressible homogeneous turbulence depending on both flow conditions and numerics. In particular, we study the GKS with multidimensional, quasi-one-dimensional, dimensional-splitting, and smooth-flow approximations. We simulate the compressible DHIT with the Taylor microscale Reynolds number Reλ =72.0 and the turbulence Mach number Ma_t between 0.1 and 0.6. We compute the low-order statistical quantities including the total kinetic energy K (t), the dissipation rate ε (t), …

Spatial Variation In Otolith Chemistry Of Atlantic Croaker Larvae In The Mid-Atlantic Bight, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

Larval Atlantic croaker Micropogonias undulatus (1 to 7 mm in standard length) were collected on the east coast of the United States from North Carolina to Delaware during 2000. We defined 3 water-mass boundaries for potential groups of spawning Atlantic croaker using temperature and salinity measured at each sampling station. We tested the hypothesis that distinct otolith chemistries existed among 3 groups of larval Atlantic croaker collected from these water masses using solution-based inductively coupled plasma-mass spectrometry. Multivariate analysis of variance indicated that otolith chemistry differed significantly among water masses. Using a quadratic discriminant function, we were able to correctly …

Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

We compared ingress patterns of Atlantic croaker Micropogonias undulatus larvae into Chesapeake Bay, USA, with published ingress patterns through barrier island inlets, the accepted model for larval fish ingress. This model asserts that larvae ingress on night flood tides at the flooddominated side of the inlet and at all depths. At the Chesapeake Bay mouth and in the adjacent coastal waters, we compared the distribution of abundance, size, age, and growth rates of croaker prior to ingress, In contrast to the barrier island inlet model, croaker larvae were more abundant at depth than closer to the surface regardless of location. …

Cirene Air-Sea Interactions In The Seychelles-Chagos Thermocline Ridge Region, J. Vialard, J. P. Duvel, M. J. Mcphaden, P. Bouruet-Aubertot, B. Ward, E. Key, D. Bourras, R. Weller, P. Minnett, A. Weil

OES Faculty Publications

A field experiment in the southwestern Indian Ocean provides new insights into ocean-atmosphere interactions in a key climatic region.

New Compact Tem-Type Deflecting And Crabbing Rf Structure, J. R. Delayen, H. Wang

Physics Faculty Publications

A new type of rf structure for the deflection and crabbing of particle beams is presented. The structure is comprised of a number of parallel TEM resonant lines operating in opposing phase from each other. One of its advantages is its compactness compared to conventional crabbing cavities operating in the TM₁₁₀ mode, thus allowing low frequency designs. This geometry would also be effective for the deflection of beams propagating at velocities substantially less than that of light.

Beam Spin Asymmetries In Deeply Virtual Compton Scattering (Dvcs) With Clas At 4.8 Gev, G. Gavalian, M. J. Amaryan, H. Bagdasaryan, M. Bektasoglu, S. Bültmann, S. L. Careccia, K. V. Dharmawardane, G. E. Dodge, N. Guler, C. E. Hyde, H. G. Juengst, N. Kalantarians, A. Klein, S. E. Kuhn, J. Lachniet, M. R. Niroula, R. A. Niyazov, L. M. Qin, F. Sabatié, S. Tkachenko, L. B. Weinstein, J. Yun, J. Zhang, Clas Collaboration

Physics Faculty Publications

We report measurements of the beam spin asymmetry in deeply virtual Compton scattering (DVCS) at an electron beam energy of 4.8 GeV using the CLAS detector at the Thomas Jefferson National Accelerator Facility. The DVCS beam spin asymmetry has been measured in a wide range of kinematics, 1.02<2.8 (GeV/c)², 0.12<_xB<0.48, and 0.1<−t<0.8 (GeV/c)², using the reaction →ep→e′pX. The number of H(e,e′γp) and H(e,e′π⁰p) events are separated in each (Q²,_xB,t) bin by a fit to the line shape of the H(e,e′p)X M²_x distribution. The validity of the method was studied in detail …

Virtual Compton Scattering And Neutral Pion Electroproduction In The Resonance Region Up To The Deep Inelastic Region At Backward Angles, G. Laveissiere, N. Degrande, S. Jaminion, C. Jutier, L. Todor, G. E. Dodge, C. E. Hyde, K. Mccormick, P. E. Ulmer, L. B. Weinstein, Jefferson Lab Hall A Collaboration

Physics Faculty Publications

We have made the first measurements of the virtual Compton scattering (VCS) process via the H(e, e′p)γ exclusive reaction in the nucleon resonance region, at backward angles. Results are presented for the W-dependence at fixed Q²=1 GeV² and for the Q² dependence at fixed W near 1.5 GeV. The VCS data show resonant structures in the first and second resonance regions. The observed Q² dependence is smooth. The measured ratio of H(e, e′p)γ to H(e, e′p)π⁰ cross sections emphasizes the different sensitivity of these two reactions to the various nucleon resonances. Finally, when compared …

Export Of Terrestrial Dissolved Organic Matter Along A River To Ocean Transect Of The Lower Chesapeake Bay Investigated By Advanced Analytical Techniques, Rachel Leigh Sleighter

Chemistry & Biochemistry Theses & Dissertations

Ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) has proved essential for the complete separation of the thousands of peaks present in natural organic matter (NOM), a complex assemblage of organic molecules present in water, soils, and sediments. An improved understanding of its composition is crucial to understand how pollutants interact with NOM and how NOM cycles through global carbon cycles.

Optimizing the acquisition and handling of the FTICR mass spectra is the first step to obtaining high quality data. A simple method to internally calibrate the peaks in the complex spectra, using naturally present fatty …