Physical Sciences and Mathematics Commons^™

Single Molecule Electrophoresis And Optical Detection Using Thermoplastic Nanofluidic Devices: An Experimental And Simulation Study, Kumuditha Madushanka Weerakoon Ratnayake

LSU Doctoral Dissertations

Nanofludic devices provide a great platform for single molecular analysis. The unique phenomena in nanoscale gained such interest in investigating the single molecular behavior in nanochannels. Sizes less than 200 nm in one or two-dimensional structures have lead to fascinating observations not accessible in microscale. When a single molecule translocates through a nanotube it interacts with channel walls by adsorption/ desorption, van der Waals interactions and hydrophilic interactions providing a mechanism for separation without any extra additives. Moreover, double layer thickness governed by the background electrolyte plays a vital role. We report single molecular electrophoresis phenomena in nanochannels and nanoslits …

Development Of Transition Metal-Catalyzed Polymerization Reactions And Their Applications For The Preparation Of Well-Defined Conjugated Polymer Architectures, Carlos Anthony Chavez

LSU Doctoral Dissertations

The synthesis of conjugated polymers and design of complex materials based on them have become increasingly popular as the demand for low-cost efficient and processible optoelectronic and semiconducting devices escalates. While advanced applications of polymeric materials require some degree of sophistication, success can be achieved through careful consideration of polymerization techniques and methodologies. Controlling critical aspects of the polymerization process allows for synthesis of complex macromolecular architectures possessing unique and novel properties that may be worth of further comprehensive investigation. This dissertation primarily focuses on the development and preparation of well-defined hierarchical macromolecular architectures. The foundation of this work encompasses …

Design And Application Of Task-Specific Organic Salts For Chemical And Biochemical Sensing, Waduge Indika Subodha Galpothdeniya

LSU Doctoral Dissertations

There is an increasing demand for development of new sensors and sensor strategies for accurate detection and discrimination of various analytes. In this regard, colorimetric and fluorometric sensor approaches have attracted considerable attention, primarily because they represent facile and inexpensive analytical tools. In this dissertation, I discuss the design and application of sensors and sensor arrays using task specific organic salts: ionic liquids (ILs) and a group of uniform materials based on organic salts (GUMBOS). As compared to typical ionic compounds, these two classes of organic salts exhibit relatively lower melting points due to bulky organic cations and/or anions. Interestingly, …

Pattern Mining And Events Discovery In Molecular Dynamics Simulations Data, Shobhit Sandesh Shakya

LSU Doctoral Dissertations

Molecular dynamics simulation method is widely used to calculate and understand a wide range of properties of materials. A lot of research efforts have been focused on simulation techniques but relatively fewer works are done on methods for analyzing the simulation results. Large-scale simulations usually generate massive amounts of data, which make manual analysis infeasible, particularly when it is necessary to look into the details of the simulation results. In this dissertation, we propose a system that uses computational method to automatically perform analysis of simulation data, which represent atomic position-time series. The system identifies, in an automated fashion, the …

Effects Of Inbreeding On Endangered Red Wolves (Canis Rufus), Kristin E. Brzeski

LSU Doctoral Dissertations

Inbreeding depression, the reduction in offspring fitness caused by mating among close relatives, is widespread in small populations and a major concern in conservation biology because it can affect population persistence. The negative effects of inbreeding results in the evolution of inbreeding avoidance behaviors; within small populations, such behaviors may encourage individuals to select mates outside of their respective species. Mate choice may also be facilitated by variation at major histocompatibility complex (MHC) genes, a gene group critical for immune response and disease resistance. Given broad impacts of inbreeding and MHC variation on fitness and behavior, evaluating their effects is …

Exploring Superconductivity In Chiral Structured Aube, Drew Jared Rebar

LSU Doctoral Dissertations

AuBe is a noncentrosymmetric superconductor with the B20 FeSi-type structure. Noncentrosymmetric superconductors are expected to give rise to unconventional superconductivity due to spin orbit coupling and a mixed spin-singlet, spin-triplet state. The B20 structure of AuBe is particularly interesting since this is one of the only known crystal structures for bulk magnetic skyrmions in materials such as MnSi and Cu2OSeO3. The superconducting state was characterized by specific heat, dc magnetization, ac susceptibility, and resistivity. Specific heat revealed AuBe to host an isotropic gap characteristic of predominantly s-wave spin-singlet pairing in the weak coupling limit. Magnetization and susceptibility measurements revealed a …

Magnetic Susceptibility Of North American Ordovician Epicontinental Seas: Spatial Variability And Sandbian-Katian Boundary Correlation, Thomas J. Schramm

LSU Doctoral Dissertations

Magnetic susceptibility (χ) has gained increased usage as a stratigraphic correlation tool. This project evaluates the utility of a χ correlation tool, including its shortcomings, and attempts its integration with other datasets. The Upper Ordovician of eastern North America represent the stratigraphic interval in which these experiments were conducted. 4566 samples were collected for the purposes of this study, and χ was measured on 3345 of the samples. This project includes three major facets, 1) the spatial variability of χ, 2) correlation of Sandbian-Katian boundary interval strata in eastern North America using χ, and 3) utility of χ for interpreting …

A Monte Carlo Approach To Studying The Hydrogen Storage Capabilities Of Potassium Magnesium Hydride (Kmgh3), Brandon L. Borill

LSU Doctoral Dissertations

Grand Canonical Monte Carlo (GCMC) simulations and the weighted histogram analysis method (WHAM) were employed at selected temperatures and pressures in the study of the hydrogen storage capabilities of KMgH3. A specially tailored addition/removal algorithm was employed to add hydrogen directly at the lattice sites. Agreement between experimental results was obtained through GCMC simulations. WHAM type studies were employed to obtain probability distributions for the purpose of learning the probability of finding hydrogen atoms at specific temperatures and hydrogen pressures. The radial distribution function was employed to study the changes in the structure of KMgH3 for the selected model as …

Numerical Simulation Of Cold Front-Related Hydrodynamics Of Wax Lake Delta, Qian Zhang

LSU Doctoral Dissertations

This study applies a three-dimensional numerical model ECOM-si to simulate the circulation in the Wax Lake delta under winter cold front conditions. This model uses real topography and bathymetry of the area to reproduce tides and the circulation between December 2012 and January 2013, which captures a total of seven cold front passages. The model results demonstrate that the circulation in the Wax Lake delta area is significantly affected by the winter cold fronts. The major findings are: (1) Water fluxes in the delta distributary network are not solely propagated within the channels but also between the channels, indicating inundation …

Three Year Assessment Of Nearshore Crude Oil Contamination In The Gulf Of Mexico Using Gulf Menhaden (Brevoortia Patronus) As An Indicator Species: Menhaden Watch, Gregory Michael Olson

LSU Doctoral Dissertations

Approximately 4.9 million barrels of crude oil along with natural gas were released into the Gulf of Mexico (GoM) from April to July 2010 (Deepwater Horizon, DWH, spill). Impacts of this magnitude seldom occur in the GoM (Ixtoc I was the last spill close to this magnitude occurring in 1979), and one cannot predict when they will happen. Major constituents of concern found in crude oil are Polycyclic Aromatic Hydrocarbons (PAHs), which often have low volatility that allows for prolonged existence in the environment. PAHs are compounds of concern according to the United States Environmental Protection Agency (USEPA), with one …

Seismic Velocity Characteristics Of Partially Saturated Unconsolidated Sediments, Jie Shen

LSU Doctoral Dissertations

Seismic velocity models of the near-surface (< 30 m) better explain seismic velocities when all elements of total effective stress are considered, particularly in materials with large cohesive and soil suction stress such as clays. Traditional constitutive elastic models assume interparticle and soil suction stresses are negligible. This study proposes a new methodology which corrects total effective stress in Hertz-Mindlin theory for interparticle and soil suction and calculates the elastic moduli by extending Biot-Gassmann theory to include pressure effects induced by water saturation changes and cohesion. The proposed model predicts seismic velocities that correlate well with measured field velocities from the literature. Soil density, porosity, elastic moduli and the soil-water characteristic curve (SWCC) are important properties for soil characterization. Currently, geotechnical and laboratory tests for soil properties are costly and limited to point sampling sites. Seismic surveys can potentially provide laterally continuous soil property values that may complement geotechnical borehole tests with low cost. We propose a new method to invert for soil properties and the SWCC from seismic P- and S-wave velocity-vs.-depth profiles interpreted from shallow (< 25 m depth) unconsolidated sediments under conditions of near-full saturation (> 99%). The results from seismic soil property inversion are validated by comparison to geotechnical and laboratory results conducted independently in the same area as the seismic survey. Knowledge of homogeneous and heterogeneous fluid-distribution patterns is important for the estimation of oil reserves, reservoir simulation, the interpretation of time-lapse seismic, and the selection of remediation techniques for groundwater contamination. Problems exist in determining in-situ fluid-distribution patterns in unconsolidated sediments because laboratory tests on core samples may not be representative of in-situ conditions. We propose a new method to determine in-situ fluid-distribution patterns by inverting …

Real-Time Shadows For Gigapixel Displacement Maps, Kevin Anthony Cherry

LSU Doctoral Dissertations

Shadows portray helpful information in scenes. From a scientific visualization standpoint, they help to add data without unnecessary clutter. In video games they add realism and depth. In common graphics pipelines, due to the independent and parallel rendering of geometric primitives, shadows are difficult to achieve. Objects require knowledge of each other and therefore multiple renders are needed to collect the necessary data. The collection of this data comes with its own set of trade offs. Our research involves adding shadows into a lunar rendering framework developed by Dr. Robert Kooima. The NASA-collected data contains a multi-gigapixel displacement map describing …

A Spatial Dynamic Model Of Population Changes In A Vulnerable Coastal Environment, Kenan Li

LSU Doctoral Dissertations

Achieving coastal sustainability in low-lying coastal areas is a great challenge. This study developed a spatial dynamic model to study the coupled natural-human responses in the form of population changes in the Lower Mississippi River Basin region. The goal was to identify the key social-economic factors (utility) and selected environmental factors (such as hazards damage, elevation, and subsidence rate) that affect population changes, as well as how population changes affect the local utility and the local environment reciprocally. The study area was partitioned into the “north’ and the “south” by a hypothetical boundary to test the differences of the emergence. …

Development Of New Linking Chemistry With The Fac-{Re(Co)3}+ Core For Eventual Applications In Radiopharmaceuticals In Imaging And Therapy, Aponsu Meregngna Pramuditha Lakmi Abhayawardhana

LSU Doctoral Dissertations

The facile labeling of biomolecules with a radionuclide is a key goal in radiopharmaceutical development. This study explores two different ligand systems for fac-[Re(CO)3L]+ complexes, that could be used in bioconjugation. The first approach uses a tridentate ligand having a sulfonamide linkage and modeled on previously evaluated fac-[Re(CO)3(N(SO2R)dpa)]PF6 complexes. The present goal was to develop new related sulfonamide complexes with more hydrophilic ligands designed to avoid the bioavailability problems that would plague the N(SO2R)dpa ligand system. A series of fac-[Re(CO)3(N(SO2R)dien)]PF6 complexes with different R groups linked to the central nitrogen of a symmetric tridentate sulfonamides were synthesized with the aim …

Developing Recognition Criteria For Current-Wave-Enhanced Sediment Gravity Flows, Kathryn Christine Denommee

LSU Doctoral Dissertations

Sedimentary fabrics preserved in the rock record provide some of the best evidence for interpreting paleo-depositional conditions. Muddy sediments in particular are important paleoenvironmental archives, preserving the most complete stratigraphic record of any rock type in basinal settings. However, the full range of mechanisms responsible for the deposition of muddy sediments, particularly in high-energy settings, remains poorly understood. Although frequently observed in modern settings, muddy prodeltaic deposits are rarely identified in the rock record, in part because no catalogue of easily distinguishable recognition criteria exists for this class of mudstones. In order to help overcome this deficiency, this dissertation project …

Computational Studies On Bimetallic Catalysis And X-Ray Absorption Spectroscopy, Sayakkarage R. G. Fernando

LSU Doctoral Dissertations

Computational studies are very important to gain an insight into reaction mechanisms and in interpreting and understanding complicated experimental observations. This report contains a discussion on computational studies performed on bimetallic catalysis and on X-ray absorption spectroscopy of insulators. The viability of a bimetallic rhodium and cobalt catalysts for industrially important hydroformylation and aldehyde-water shift catalysis (AWS) is discussed. Density functional theory (DFT) studies were used for bimetallic catalysis and time-dependent DFT studies were used for excited state dynamics. These studies were performed using Gaussian 09 package and NWChem. Hydroformylation is experimentally performed in acetone and 30% water/acetone systems and …

Rényi Quantum Conditional Mutual Information And Parity Quantum Optical Metrology, Kaushik Parasuram Seshadreesan

LSU Doctoral Dissertations

This is a two-part thesis strung together by a common underlying theme—quantum correlations. We present some new characterizations and quantifications of quantum correlations and an application of one such correlation—entanglement—for quantum technology.

In Part I of the thesis, we use a Rényi generalization of the quantum conditional mutual information (QCMI) to define and study new measures of quantum entanglement and quantum discord. In particular, using a quantity derived from a Rényi QCMI, we introduce: a) the geometric squashed entanglement, a faithful entanglement measure, which is a lower bound on the squashed entanglement and which reduces to the geometric measure of …

Towards The Realization Of Systematic, Self-Consistent Typical Medium Theory For Interacting Disordered Systems, Chinedu Ekuma Ekuma

LSU Doctoral Dissertations

This work is devoted to the development of a systematic method for studying electron localization. The developed method is Typical Medium Dynamical Cluster Approximation (TMDCA) using the Anderson-Hubbard model. The TMDCA incorporates non-local correlations beyond the local typical environment in a self-consistent way utilizing the momentum resolved typical-density-of-states and the non-local hybridization function to characterize the localization transition. For the (non-interacting) Anderson model, I show that the TMDCA provides a proper description of the Anderson localization transition in one, two, and three dimensions. In three-dimensions, as a function of cluster size, the TMDCA systematically recovers the re-entrance behavior of the …

Left-Orderability, Cyclic Branched Covers And Representations Of The Knot Group, Ying Hu

LSU Doctoral Dissertations

A group G is called left-orderable if one can find a total order on G, which is preserved under left multiplication. In this paper we first give a sufficient condition for the fundamental group of the nth cyclic branched cover of the three sphere over a prime knot K to be left-orderable, in terms of representations of the knot group. Then we make use of this criterion to study the left-orderability of fundamental groups of cyclic branched covers over two-bridge knots and satellite knots.

Using Trace Fossils To Determine The Role Of Oceanic Anoxic Event Ii On The Cretaceous Western Interior Seaway Paleoenvironment, Jacob Frederick Grosskopf

LSU Doctoral Dissertations

Did well-oxygenated benthic conditions exist in all parts of the Cretaceous Western Interior Seaway (CWIS) during the deposition of Bed 63 at the onset Oceanic Anoxic Event II (OAE II), as suggested by findings from two cores from the central portion of the CWIS? This problem was approached by categorizing the bioturbation that is prevalent through Bed 63 into oxygen-related ichnofabrics (ORI) in order to describe benthic oxygen conditions. These data were collected from outcrop and core among seven different sites along West–East and North–South transects that traversed portions of the CWIS with differing depositional settings and proximities to the …

On The Development Of Analytical Methodologies To Interrogate The Lipid Dynamics And Phase Transition Resulting From The Reduction Of Stimuli-Responsive Vesicles, James Edward Winter

LSU Doctoral Dissertations

The potential is great for liposome drug delivery systems that provide specific contents release at diseased tissue sites upon activation by upregulated enzymes; however, this potential will only come to fruition with mechanistic knowledge of the contents release process. NAD(P)H:quinone oxidoreductase type 1 (NQO1) is a target for reductively-responsive liposomes, as it is an enzyme upregulated in numerous cancer tissues and is capable of reducing quinone propionic acid (QPA) trigger groups to hydroquinones that self-cleave from dioleolylphosphatidylethanolamine (DOPE) liposome surfaces, thereby initiating contents release. This research targets the development of analytical methodologies to observe and characterize the dynamics and resulting …

Wavelets, Coorbit Theory, And Projective Representations, Amer Hasan Darweesh

LSU Doctoral Dissertations

Banach spaces of functions, or more generally, of distributions are one of the main topics in analysis. In this thesis, we present an abstract framework for construction of invariant Banach function spaces from projective group representations. Coorbit theory gives a unified method to construct invariant Banach function spaces via representations of Lie groups. This theory was introduced by \Fch\, and \Gro\, in \cite{FG,FG1, FG2,FG3} and then extended in \cite{CO2}. We generalize this concept by constructing coorbit spaces using projective representation which is first studied by O. Christensen in \cite{O1}. This allows us to describe wider classes of function spaces as …

Seavipers - Computer Vision And Inertial Position Reference Sensor System (Cviprss), Justin Lee Erdman

LSU Doctoral Dissertations

This work describes the design and development of an optical, Computer Vision (CV) based sensor for use as a Position Reference System (PRS) in Dynamic Positioning (DP). Using a combination of robotics and CV techniques, the sensor provides range and heading information to a selected reference object. The proposed optical system is superior to existing ones because it does not depend upon special reflectors nor does it require a lengthy set-up time. This system, the Computer Vision and Inertial Position Reference Sensor System (CVIPRSS, pronounced \nickname), combines a laser rangefinder, infrared camera, and a pan--tilt unit with the robust TLD …

Photoelectrons And Recombining Electrons In Atomic And Molecular Systems, Kristen D'Ann Fulfer

LSU Doctoral Dissertations

This work in this dissertation explores how photoelectrons enter and exit atoms and molecules. The electron rescattering events which may occur during photoionization or photorecombination processes play a dominant role in the understanding of how photoelectrons enter and exit molecules, which is intrinsically linked to how chemical reactions occur. Chapters 3-4 of this dissertation present evidence of vibrational mode specific breakdown of the Franck-Condon Principle in the photoionization of low symmetry molecules, acrolein and the singly halogenated thiophenes, due to resonant and non-resonant electron rescattering dynamics. In Chapters 5-6, the disentanglement of the valence electronic structure, as well as evidence …

Nanoscale Gumbos: Size-Control, Characterization, And Applications As Enantioselective Molecularly Imprinted Polymers And Fluorescent Materials, Suzana Hamdan

LSU Doctoral Dissertations

Nanomaterials derived from a group of uniform materials based on organic salts (GUMBOS) have been introduced into the scientific literature through many analytical, biological, and technological applications. These nanomaterials, referred to as nanoGUMBOS, have been shown to display a number of interesting properties including fluorescence, magnetism, tumor targeting, and optoelectronic properties. Herein, we present major studies on nanoGUMBOS including synthesis and size-control, chiral molecular imprinting in polymers, as well as investigation of optical properties and quantum yield of fluorescent semiconductor-based nanoGUMBOS. Various strategies were introduced for production of well-defined nanoGUMBOS. Specifically, several methods based on sonochemistry, microwave, cyclodextrin, and surfactant-assisted …

Synthesis, Characterization, And Evaluation Of Small Molecule-Based Fluorogenic Probes For The Detection Of Cellular Thiols, Rasika Ranatunga Nawimanage

LSU Doctoral Dissertations

Fluorescence methods for disease diagnosis and detection of important analytes are becoming popular route as a technique, as they offer a simple non-invasive approach. Recently, many novel fluorophores and probes have been reported for selectively and sensitively detecting low abundance biological species in disease pathways. Biological thiols, such as glutathione, cysteine, and homocysteine, along with the smallest member hydrogen sulfide, are key thiol analytes in biological environments, and they play a vital role in living systems by maintaining the redox homeostasis of cells. Alteration of their ratios can cause cellular dysfunction and cell death. Furthermore, thiol levels in cells and …

Method Development For The Assignment Of Nmr Peaks And The Determination Of Quaternary Protein Structure Using Reductive Methylation, Pamlea Nicole Brady

LSU Doctoral Dissertations

The work described herein is centered on reductive methylation, a chemical modification reaction, which allows for the introduction of methyl groups at the primary amines of the lysine side chain and at the N-terminus. The resulting methyl groups are effective probes for the study of protein structure and dynamics using nuclear magnetic resonance spectroscopy (NMR). Described herein is work conducted on the development of tools for the study of protein structure using reductive methylation, highlighting options for addressing limitations of the labeling method encountered by its practical use. Chapter 1 serves as a brief introduction to protein structure and the …

Investigating The Photorecombination Dynamics In Molecular High-Harmonic Spectra, Benjamin Parker Wilson

LSU Doctoral Dissertations

The work presented in this dissertation will relate the photorecombination dynamics to photoionization dynamics in SF6 utilizing the self-probing mechanism, high harmonic generation (HHG). This work specifically aims to establish parameters for which the comparison is applicable and the macroscopic complications inherent in HHG do not interfere with the extraction of dynamic information. The first part of this work established the macroscopic experimental apparatus necessary for consistent spectroscopic observation. It is shown that using a gas jet that is an order of magnitude shorter than the Rayleigh length of the driving laser results in more consistent harmonic spatial profiles and …

Well-Quasi-Ordering By The Induced-Minor Relation, Chanun Lewchalermvongs

LSU Doctoral Dissertations

Robertson and Seymour proved Wagner's Conjecture, which says that finite graphs are well-quasi-ordered by the minor relation. Their work motivates the question as to whether any class of graphs is well-quasi-ordered by other containment relations. This dissertation is concerned with a special graph containment relation, the induced-minor relation. This dissertation begins with a brief introduction to various graph containment relations and their connections with well-quasi-ordering. In the first chapter, we discuss the results about well-quasi-ordering by graph containment relations and the main problems of this dissertation. The graph theory terminology and preliminary results that will be used are presented in …

I. Synthesis Of Ascarosides For Biological Evaluation And Ii. Development Of Visible Light-Promoted Selenofunctionalization And Grafting Of Aryl Iodides, Elizabeth Susan Conner Balapitiya

LSU Doctoral Dissertations

This dissertation focuses on analog synthesis for biological evaluation and visible light promoted method development. Chapter 1 centers upon the synthesis of Caenorhabditis elegans dauer pheromone analogs. C. elegans is a nematode which, in times of environmental stress, enters a dauer stage. Two highly conserved pathways, which play important roles in some diseases in higher organisms, monitor dauer formation: TGF-β and IGF-1. Dauer formation is triggered by the nematode’s chemosensation of the dauer pheromone, consisting of a group of previously-isolated ascarosides. These compounds differ in chain length, saturation, terminal functionality of side chain, ω vs. ω-1 oxygenation and presence of …