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Clemson University

Publications

2009

Articles 1 - 15 of 15

Full-Text Articles in Physical Sciences and Mathematics

Using Population Synthesis Of Massive Stars To Study The Interstellar Medium Near Ob Associations, R. Voss, R. Diehl, Dieter H. Hartmann, M. Cerviño, J. S. Vink, G. Meynet, M. Limongi, A. Chieffi Sep 2009

Using Population Synthesis Of Massive Stars To Study The Interstellar Medium Near Ob Associations, R. Voss, R. Diehl, Dieter H. Hartmann, M. Cerviño, J. S. Vink, G. Meynet, M. Limongi, A. Chieffi

Publications

Aims. We study the massive stars in OB associations and their surrounding interstellar medium environment, using a population synthesis code. Methods. We developed a new population synthesis code for groups of massive stars, where we model the emission of different forms of energy and matter from the stars of the association. In particular, the ejection of the two radioactive isotopes 26Al and 60Fe is followed, as well as the emission of hydrogen ionizing photons, and the kinetic energy of the stellar winds and supernova explosions. We investigate various alternative astrophysical inputs and the resulting output sensitivities, especially effects due to …

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Accelerating Sift On Parallel Architectures, Amy Apon, Seth Warn, Wesley Emeneker, Jackson Cothren Sep 2009

Accelerating Sift On Parallel Architectures, Amy Apon, Seth Warn, Wesley Emeneker, Jackson Cothren

Publications

SIFT is a widely-used algorithm that extracts features from images; using it to extract information from hundreds of terabytes of aerial and satellite photographs requires parallelization in order to be feasible. We explore accelerating an existing serial SIFT implementation with OpenMP parallelization and GPU execution.

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Update Sequence Stability In Graph Dynamical Systems, Matthew Macauley, Henning S. Mortveit Sep 2009

Update Sequence Stability In Graph Dynamical Systems, Matthew Macauley, Henning S. Mortveit

Publications

In this article, we study finite dynamical systems defined over graphs, where the functions are applied asynchronously. Our goal is to quantify and understand stability of the dynamics with respect to the update sequence, and to relate this to structural properties of the graph. We introduce and analyze three different notions of update sequence stability, each capturing different aspects of the dynamics. When compared to each other, these stability concepts yield vastly different conclusions regarding the relationship between stability and graph structure, painting a more complete picture of update sequence stability.

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Weibel Instability And Associated Strong Fields In A Fully 3d Simulation Of A Relativistic Shock, K.-I. Nishikawa, J. Niemiec, P. E. Hardee, M. Medvedev, H. Sol, Y. Mizuno, B. Zhang, M. Pohl, M. Oka, Dieter H. Hartmann Aug 2009

Weibel Instability And Associated Strong Fields In A Fully 3d Simulation Of A Relativistic Shock, K.-I. Nishikawa, J. Niemiec, P. E. Hardee, M. Medvedev, H. Sol, Y. Mizuno, B. Zhang, M. Pohl, M. Oka, Dieter H. Hartmann

Publications

Plasma instabilities (e.g., Buneman, Weibel and other two-stream instabilities) excited in collision-less shocks are responsible for particle (electron, positron, and ion) acceleration. Using a new 3-D relativistic particle-in-cell code, we have investigated the particle acceleration and shock structure associated with an unmagnetized relativistic electron-positron jet propagating into an unmagnetized electron-positron plasma. The simulation has been performed using a long simulation system in order to study the nonlinear stages of the Weibel instability, the particle acceleration mechanism, and the shock structure. Cold jet electrons are thermalized and slowed while the ambient electrons are swept up to create a partially developed hydrodynamic …

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Tracing The Inner Edge Of The Disk Around Hd 100546 With Rovibrational Co Emission Lines, Sean D. Brittain, Joan R. Najita, John S. Carr Aug 2009

Tracing The Inner Edge Of The Disk Around Hd 100546 With Rovibrational Co Emission Lines, Sean D. Brittain, Joan R. Najita, John S. Carr

Publications

In this paper we present high-resolution 4.7 μm spectra of the isolated Herbig Be star HD 100546. HD 100546 has been the subject of intense scrutiny because it is a young nearby star with a transitional disk. We observe the Δv = 1 rovibrational CO transitions in order to clarify the distribution of warm gas in the inner disk. Modeling of the CO spectrum indicates that the gas is vibrationally excited by collisions and UV fluorescence. The observed emission extends from 13 to 100 AU. The inner edge of the molecular gas emission is consistent with the inner edge of …

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Revealing The Structure Of A Pre-Transitional Disk: The Case Of The Herbig F Star Sao 206462 (Hd 135344b), C A. Grady, G Schneider, M L. Sitko, G M. Williger, K Hamaguchi, Sean D. Brittain, K Ablordeppey, D Apai, L Beerman, W J. Carpenter Jul 2009

Revealing The Structure Of A Pre-Transitional Disk: The Case Of The Herbig F Star Sao 206462 (Hd 135344b), C A. Grady, G Schneider, M L. Sitko, G M. Williger, K Hamaguchi, Sean D. Brittain, K Ablordeppey, D Apai, L Beerman, W J. Carpenter

Publications

SAO 206462 (HD 135344B) has previously been identified as a Herbig F star with a circumstellar disk with a dip in its infrared excess near 10 mum. In combination with a low accretion rate estimated from Br gamma, it may represent a gapped, but otherwise primordial or "pre-transitional" disk. We test this hypothesis with Hubble Space Telescope coronagraphic imagery, FUV spectroscopy and imagery and archival X-ray data, and spectral energy distribution (SED) modeling constrained by the observed system inclination, disk outer radius, and outer disk radial surface brightness (SB) profile using the Whitney Monte Carlo Radiative Transfer Code. The essentially …

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The First Two Transient Supersoft X-Ray Sources In M31 Globular Clusters And The Connection To Classical Novae, M. Henze, W. Pietsch, F. Haberl, G. Sala, R. Quimby, M. Hernanz, M. Della Valle, P. Milne, G. G. Williams, V Burwitz, J Greiner, H Stiele, Dieter H. Hartmann, A.K.H. Dong, K Hornoch Jun 2009

The First Two Transient Supersoft X-Ray Sources In M31 Globular Clusters And The Connection To Classical Novae, M. Henze, W. Pietsch, F. Haberl, G. Sala, R. Quimby, M. Hernanz, M. Della Valle, P. Milne, G. G. Williams, V Burwitz, J Greiner, H Stiele, Dieter H. Hartmann, A.K.H. Dong, K Hornoch

Publications

Context. Classical novae (CNe) have been found to represent the major class of supersoft X-ray sources (SSSs) in our neighbour galaxy M 31. Aims. We determine the properties and evolution of the two first SSSs ever discovered in the M 31 globular cluster (GC) system. Methods. We have used XMM-Newton, Chandra and Swift observations of the centre region of M 31 to discover both SSSs and to determine their X-ray light curves and spectra. We performed detailed analysis of XMM-Newton EPIC PN spectra of the source in Bol 111 (SS1) using blackbody and NLTE white dwarf (WD) atmosphere models. For …

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The Very Short Supersoft X-Ray State Of The Classical Nova M31n 2007-11a, M. Henze, W. Pietsch, G. Sala, M. Della Valle, M. Hernanz, J. Greiner, V. Burwitz, M. J. Freyberg, F. Haberl, Dieter H. Hartmann, P Milne, G G. Williams May 2009

The Very Short Supersoft X-Ray State Of The Classical Nova M31n 2007-11a, M. Henze, W. Pietsch, G. Sala, M. Della Valle, M. Hernanz, J. Greiner, V. Burwitz, M. J. Freyberg, F. Haberl, Dieter H. Hartmann, P Milne, G G. Williams

Publications

Context. Short supersoft X-ray source (SSS) states (durations ≤100 days) of classical novae (CNe) indicate massive white dwarfs that are candidate progenitors of supernovae type Ia. Aims. We carry out a dedicated optical and X-ray monitoring program of CNe in the bulge of M 31. Methods. We discovered M31N 2007-11a and determined its optical and X-ray light curve. We used the robotic Super-LOTIS tele-scope to obtain the optical data and XMM-Newton and Chandra observations to discover an X-ray counterpart to that nova. Results. Nova M31N 2007-11a is a very fast CN, exhibiting a very short SSS state with an appearance …

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Grb 080913 At Redshift 6.7, J. Greiner, T. Krühler, J. P. U. Fynbo, A. Rossi, R. Schwarz, S. Klose, S. Savaglio, N. R. Tanvir, S. Mcbreen, T Totani, B B. Zhang, X F. Wu, D Watson, S D. Barthelmy, A P. Beardmore, P Ferrero, N Gehrels, D A. Kann, N Kawai, A Küpcü Yoldaş, P Mészáros, B Milvang-Jensen, S R. Oates, D Pierini, P Schady, K Toma, P M. Vreeswijk, A Yoldas, B Zhang, P Afonso, K Aoki, D N. Burrows, C Clemens, R Filgas, Z Haiman, Dieter H. Hartmann Mar 2009

Grb 080913 At Redshift 6.7, J. Greiner, T. Krühler, J. P. U. Fynbo, A. Rossi, R. Schwarz, S. Klose, S. Savaglio, N. R. Tanvir, S. Mcbreen, T Totani, B B. Zhang, X F. Wu, D Watson, S D. Barthelmy, A P. Beardmore, P Ferrero, N Gehrels, D A. Kann, N Kawai, A Küpcü Yoldaş, P Mészáros, B Milvang-Jensen, S R. Oates, D Pierini, P Schady, K Toma, P M. Vreeswijk, A Yoldas, B Zhang, P Afonso, K Aoki, D N. Burrows, C Clemens, R Filgas, Z Haiman, Dieter H. Hartmann

Publications

We report on the detection by Swift of GRB 080913, and subsequent optical/near-infrared follow-up observations by GROND, which led to the discovery of its optical/NIR afterglow and the recognition of its high-z nature via the detection of a spectral break between the i and z bands. Spectroscopy obtained at the ESO-VLT revealed a continuum extending down to λ = 9400 Å, and zero flux for 7500 Å<λ< 9400 Å, which we interpret as the onset of a Gunn–Peterson trough at z = 6.695± 0.025 (95.5% confidence level), making GRB 080913 the highest-redshift gamma-ray burst (GRB) to date, and more distant than the highest-redshift QSO. We note that many redshift indicators that are based on promptly available burst or afterglow properties have failed for GRB 080913. We report on our follow-up campaign and compare the properties of GRB 080913 with bursts at lower redshift. In particular, since the afterglow of this burst is fainter than typical for GRBs, we show that 2 m class telescopes can identify most high-redshift GRBs.

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Modeling Effects Of Human Single Nucleotide Polymorphisms On Protein-Protein Interactions, Shaolei Teng, Thomas Madej, Anna Panchenko, Emil Alexov Mar 2009

Modeling Effects Of Human Single Nucleotide Polymorphisms On Protein-Protein Interactions, Shaolei Teng, Thomas Madej, Anna Panchenko, Emil Alexov

Publications

A large set of three-dimensional structures of 264 protein-protein complexes with known nonsynonymous single nucleotide polymorphisms (nsSNPs) at the interface was built using homology-based methods. The nsSNPs were mapped on the proteins' structures and their effect on the binding energy was investigated with CHARMM force field and continuum electrostatic calculations. Two sets of nsSNPs were studied: disease annotated Online Mendelian Inheritance in Man (OMIM) and nonannotated (non-OMIM). It was demonstrated that OMIM nsSNPs tend to destabilize the electrostatic component of the binding energy, in contrast with the effect of non-OMIM nsSNPs. In addition, it was shown that the change of …

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In Situ Probes Of The First Galaxies And Reionization: Gamma-Ray Bursts, Matthew Mcquinn, Joshua S. Bloom, Jonathan Grindlay, David Band, S. D. Barthemy, E. Berger, A. Corsi, S. Covino, G. J. Fishman, Steven R. Furlanetto, Neil Gehrels, Dieter H. Hartmann, Chryssa Kouveliotou, A S. Kutyrev, Abraham Loeb, S Harvard Moseley, Tsvi Piran, L Piro, J X. Prochaska, R Salvaterra, P Schady, A M. Soderberg, G Tagliaferri Feb 2009

In Situ Probes Of The First Galaxies And Reionization: Gamma-Ray Bursts, Matthew Mcquinn, Joshua S. Bloom, Jonathan Grindlay, David Band, S. D. Barthemy, E. Berger, A. Corsi, S. Covino, G. J. Fishman, Steven R. Furlanetto, Neil Gehrels, Dieter H. Hartmann, Chryssa Kouveliotou, A S. Kutyrev, Abraham Loeb, S Harvard Moseley, Tsvi Piran, L Piro, J X. Prochaska, R Salvaterra, P Schady, A M. Soderberg, G Tagliaferri

Publications

The first structures in the Universe formed at z > 7, at higher redshift than all currently known galaxies. Since GRBs are brighter than other cosmological sources at high redshift and exhibit simple power-law afterglow spectra that is ideal for absorption studies, they serve as powerful tools for studying the early universe. New facilities planned for the coming decade will be able to obtain a large sample of high-redshift GRBs. Such a sample would constrain the nature of the first stars, galaxies, and the reionization history of the Universe.

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Hd 100453: A Link Between Gas-Rich Protoplanetary Disks And Gas-Poor Debris Disks, K A. Collins, C A. Grady, K Hamaguchi, J P. Wisniewski, Sean D. Brittain, M Sitko, W J. Carpenter, J P. Williams, G S. Mathews, G M. Williger, R Van Boekel, A Carmona, Th. Henning, M E. Van Den Ancker, G Meeus, X P. Chen, R Petre, B E. Woodgate Feb 2009

Hd 100453: A Link Between Gas-Rich Protoplanetary Disks And Gas-Poor Debris Disks, K A. Collins, C A. Grady, K Hamaguchi, J P. Wisniewski, Sean D. Brittain, M Sitko, W J. Carpenter, J P. Williams, G S. Mathews, G M. Williger, R Van Boekel, A Carmona, Th. Henning, M E. Van Den Ancker, G Meeus, X P. Chen, R Petre, B E. Woodgate

Publications

HD 100453 has an IR spectral energy distribution (SED) which can be fit with a power law plus a blackbody. Previous analysis of the SED suggests that the system is a young Herbig Ae star with a gas-rich, flared disk. We reexamine the evolutionary state of the HD 100453 system by refining its age (based on a candidate low-mass companion) and by examining limits on the disk extent, mass accretion rate, and gas content of the disk environment. We confirm that HD 100453B is a common proper motion companion to HD 100453A, with a spectral type of M4.0V-M4.5V, and derive …

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Ratiometric Single-Nanoparticle Oxygen Sensors For Biological Imaging, Changfeng Wu, Barbara Bull, Kenneth Christensen, Jason Mcneill Feb 2009

Ratiometric Single-Nanoparticle Oxygen Sensors For Biological Imaging, Changfeng Wu, Barbara Bull, Kenneth Christensen, Jason Mcneill

Publications

It makes sense: Conjugated polymer nanoparticles doped with a platinum porphyrin dye exhibit bright phosphorescence that is highly sensitive to the concentration of molecular oxygen. The small size, extraordinary brightness, excellent sensitivity, and ratiometric emission, together with the demonstration of single-particle sensing and cellular uptake, indicate the potential of the nanoparticle sensors for quantitative mapping of local molecular oxygen concentration.

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Nuclear Resonances: The Quest For Large Column Densities And A New Tool, J. Greiner, S. Boggs, G. Dicocco, K. T. Freese, N. Gehrels, Dieter H. Hartmann, A. Iyudin, G. Kanbach, A. A. Zdziarski Jan 2009

Nuclear Resonances: The Quest For Large Column Densities And A New Tool, J. Greiner, S. Boggs, G. Dicocco, K. T. Freese, N. Gehrels, Dieter H. Hartmann, A. Iyudin, G. Kanbach, A. A. Zdziarski

Publications

Nuclear physics offers us a powerful tool: using nuclear resonance absorption lines to infer the physical conditions in astrophysical settings which are otherwise diffcult to deduce. Present-day technology provides an increase in sensitivity over previous gamma-ray missions large enough to utilize this tool for the first time. The most exciting promise is to measure gamma-ray bursts from the first star(s) at redshifts 20–60, but also active galactic nuclei are promising targets.

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Cycle Equivalence Of Graph Dynamical Systems, Matthew Macauley, Henning S. Mortveit Jan 2009

Cycle Equivalence Of Graph Dynamical Systems, Matthew Macauley, Henning S. Mortveit

Publications

Graph dynamical systems (GDSs) generalize concepts such as cellular automata and Boolean networks and can describe a wide range of distributed, nonlinear phenomena. Two GDSs are cycle equivalent if their periodic orbits are isomorphic as directed graphs, which captures the notion of having comparable long-term dynamics. In this paper, we study cycle equivalence of GDSs in which the vertex functions are applied sequentially through an update sequence. The main result is a general characterization of cycle equivalence based on the underlying graph Y and the update sequences. We construct and analyse two graphs C(Y) and D( …

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