Physical Sciences and Mathematics Commons^™

Machine Learning Applications For Drug Repurposing, Hansaim Lim

Dissertations, Theses, and Capstone Projects

The cost of bringing a drug to market is astounding and the failure rate is intimidating. Drug discovery has been of limited success under the conventional reductionist model of one-drug-one-gene-one-disease paradigm, where a single disease-associated gene is identified and a molecular binder to the specific target is subsequently designed. Under the simplistic paradigm of drug discovery, a drug molecule is assumed to interact only with the intended on-target. However, small molecular drugs often interact with multiple targets, and those off-target interactions are not considered under the conventional paradigm. As a result, drug-induced side effects and adverse reactions are often neglected …

Valid Time Rdf, Hsien-Tseng Wang

Dissertations, Theses, and Capstone Projects

The Semantic Web aims at building a foundation of semantic-based data models and languages for not only manipulating data and knowledge, but also supporting decision making by machines. Naturally, time-varying data and knowledge are required in Semantic Web applications to incorporate time and further reason about it. However, the original specifications of Resource Description Framework (RDF) and Web Ontology Language (OWL) do not include constructs for handling time-varying data and knowledge. For simplicity, RDF model is confined to binary predicates, hence some form of reification is needed to represent higher-arity predicates. To this date, there are many proposals extending RDF …

Snow-Albedo Feedback In Northern Alaska: How Vegetation Influences Snowmelt, Lucas C. Reckhaus

Theses and Dissertations

This paper investigates how the snow-albedo feedback mechanism of the arctic is changing in response to rising climate temperatures. Specifically, the interplay of vegetation and snowmelt, and how these two variables can be correlated. This has the potential to refine climate modelling of the spring transition season. Research was conducted at the ecoregion scale in northern Alaska from 2000 to 2020. Each ecoregion is defined by distinct topographic and ecological conditions, allowing for meaningful contrast between the patterns of spring albedo transition across surface conditions and vegetation types. The five most northerly ecoregions of Alaska are chosen as they encompass …

Cis 4400 Data Warehousing: Lecture 1 - "Overview", Royce Kok, B Madhusudan, Nyc Tech-In-Residence Corps

Open Educational Resources

Lecture #1 for the course: CIS 4400: Data Warehousing for Analytics - "Overview" delivered at Baruch College in Spring 2020 by Royce Kok and B. Madhusudan as part of the NYC Tech-in-Residence Corps program.

Amazon Alexa + Linked Open Data: Theorizing Concerning Relationships Between (Surveillant) Smart-Home Voice Assistants And Linked Open Data, Michelle Nitto

Publications and Research

No abstract provided.

Mapping In The Humanities: Gis Lessons For Poets, Historians, And Scientists, Emily W. Fairey

Open Educational Resources

User-friendly Geographic Information Systems (GIS) is the common thread of this collection of presentations, and activities with full lesson plans. The first section of the site contains an overview of cartography, the art of creating maps, and then looks at historical mapping platforms like Hypercities and Donald Rumsey Historical Mapping Project. In the next section Google Earth Desktop Pro is introduced, with lessons and activities on the basics of GE such as pins, paths, and kml files, as well as a more complex activity on "georeferencing" an historic map over Google Earth imagery. The final section deals with ARCGIS Online …

Cs04all: Machine Learning Module, Hunter R. Johnson

Open Educational Resources

These are materials that may be used in a CS0 course as a light introduction to machine learning.

The materials are mostly Jupyter notebooks which contain a combination of labwork and lecture notes. There are notebooks on Classification, An Introduction to Numpy, and An Introduction to Pandas.

There are also two assessments that could be assigned to students. One is an essay assignment in which students are asked to read and respond to an article on machine bias. The other is a lab-like exercise in which students use pandas and numpy to extract useful information about subway ridership in NYC. …

Open Source Foundations For Spatial Decision Support Systems, Jochen Albrecht

Publications and Research

Spatial Decision Support Systems (SDSS) were a hot topic in the 1990s, when researchers tried to imbue GIS with additional decision support features. Successful practical developments such as HAZUS or CommunityViz have since been built, based on commercial desktop software and without much heed for theory other than what underlies their process models. Others, like UrbanSim, have been completely overhauled twice but without much external scrutiny. Both the practical and the theoretical foundations of decision support systems have developed considerably over the past 20 years. This article presents an overview of these developments and then looks at what corresponding tools …

Zero Textbook Cost Syllabus For Cis 2200h (Introduction To Information Systems And Technologies), Curtis Izen

Open Educational Resources

This course introduces students to information systems in business. Due to the rapid developments in Information Technology (IT) and the dramatic changes brought by these new technologies in the way companies operate, compete and do business, familiarity with information systems has become indispensable for the leaders of today and tomorrow's organizations.

Breadcrumbs: Privacy As A Privilege, Prachi Bhardwaj

Capstones

Breadcrumbs: Privacy as a Privilege Abstract

By: Prachi Bhardwaj

In 2017, the world saw more data breaches than in any year prior. The count was more than the all-time high record in 2016, which was 40 percent more than the year before that.

That’s because consumer data is incredibly valuable today. In the last three decades, data storage has gone from being stored physically to being stored almost entirely digitally, which means consumer data is more accessible and applicable to business strategies. As a result, companies are gathering data in ways previously unknown to the average consumer, and hackers are …

Ethics And Bias In Machine Learning: A Technical Study Of What Makes Us “Good”, Ashley Nicole Shadowen

Student Theses

The topic of machine ethics is growing in recognition and energy, but bias in machine learning algorithms outpaces it to date. Bias is a complicated term with good and bad connotations in the field of algorithmic prediction making. Especially in circumstances with legal and ethical consequences, we must study the results of these machines to ensure fairness. This paper attempts to address ethics at the algorithmic level of autonomous machines. There is no one solution to solving machine bias, it depends on the context of the given system and the most reasonable way to avoid biased decisions while maintaining the …

Zero Textbook Cost Syllabus For Cis 3367 (Spreadsheet Applications In Business), Soniya Dsouza

Open Educational Resources

The primary focus of this course is to learn how to construct and use powerful spreadsheets for effective managerial decision-making. This course is mostly project- oriented with a dual focus on spreadsheet engineering and quantitative modeling of financial applications. Students will learn to develop powerful spreadsheet models and perform data analysis using Pivot Tables, VLookUp, Data Validation techniques and Sub Total functions. Students will also learn how to enhance spreadsheets by creating dashboards on financial data. The Visual Basic (macro) concepts will also be introduced to students. With the knowledge and hands-on experience of these concepts, students will be prepared …

Introduction To Gis Using Open Source Software, 8th Ed, Frank Donnelly

Open Educational Resources

This tutorial was created to accompany the GIS Practicum, a day-long workshop offered by the Newman Library at Baruch College CUNY that introduces participants to geographic information systems (GIS) using the open source software QGIS. The practicum introduces GIS as a concept for envisioning information and as a tool for conducting geographic analyses and creating maps. Participants learn how to navigate a GIS interface, how to prepare layers and conduct a basic geographic analysis, and how to create thematic maps. This tutorial was written using QGIS version 2.18 "Las Palmas", a cross-platform (Windows, Mac, Linux) desktop GIS software package.

Sliding Window Based Feature Extraction And Traffic Clustering For Green Mobile Cyberphysical Systems, Jiao Zhang, Li Zhou, Angran Xiao, Sai Zeng, Haitao Zhao, Jibo Wei

Publications and Research

Both the densification of small base stations and the diversity of user activities bring huge challenges for today’s heterogeneous networks, either heavy burdens on base stations or serious energy waste. In order to ensure coverage of the network while reducing the total energy consumption, we adopt a green mobile cyberphysical system (MCPS) to handle this problem. In this paper, we propose a feature extractionmethod using sliding window to extract the distribution feature of mobile user equipment (UE), and a case study is presented to demonstrate that the method is efficacious in reserving the clustering distribution feature. Furthermore, we present traffic …

2d Vector Map And Database Design For Indoor Assisted Navigation, Luciano Caraciolo Albuquerque

Dissertations and Theses

In this paper we implemented a 2D Vector Map, map editor and Database design intended to provide an efficient way to convert cad files from indoor environments to a set of vectors representing hallways, doors, exits, elevators, and other entities embedded in a floor plan, and save them in a database for use by other applications, such as assisted navigation for blind people.

A graphical application as developed in C++ to allow the user to input a CAD DXF file, process the file to automatically obtain nodes and edges, and save the nodes and edges to a database for posterior …

Geodesic Merging, Konstantinos Georgatos

Publications and Research

We pursue an account of merging through the use of geodesic semantics, the semantics based on the length of the shortest path on a graph. This approach has been fruitful in other areas of belief change such as revision and update. To this end, we introduce three binary merging operators of propositions defined on the graph of their valuations and we characterize them with a finite set of postulates. We also consider a revision operator defined in the extended language of pairs of propositions. This extension allows us to express all merging operators through the set of revision postulates.

Introduction To Gis Using Open Source Software, 7th Ed, Frank Donnelly

Open Educational Resources

This tutorial was created to accompany the GIS Practicum, a day-long workshop offered by the Newman Library at Baruch College CUNY that introduces participants to geographic information systems (GIS) using the open source software QGIS. The practicum introduces GIS as a concept for envisioning information and as a tool for conducting geographic analyses and creating maps. Participants learn how to navigate a GIS interface, how to prepare layers and conduct a basic geographic analysis, and how to create thematic maps. This tutorial was written using QGIS version 2.14 "Essen", a cross-platform (Windows, Mac, Linux) desktop GIS software package.

Exploring Data Mining Techniques For Tree Species Classification Using Co-Registered Lidar And Hyperspectral Data, Julia K. Marrs

Theses and Dissertations

NASA Goddard’s LiDAR, Hyperspectral, and Thermal imager provides co-registered remote sensing data on experimental forests. Data mining methods were used to achieve a final tree species classification accuracy of 68% using a combined LiDAR and hyperspectral dataset, and show promise for addressing deforestation and carbon sequestration on a species-specific level.

Large-Scale Spatial Data Management On Modern Parallel And Distributed Platforms, Simin You

Dissertations, Theses, and Capstone Projects

Rapidly growing volume of spatial data has made it desirable to develop efficient techniques for managing large-scale spatial data. Traditional spatial data management techniques cannot meet requirements of efficiency and scalability for large-scale spatial data processing. In this dissertation, we have developed new data-parallel designs for large-scale spatial data management that can better utilize modern inexpensive commodity parallel and distributed platforms, including multi-core CPUs, many-core GPUs and computer clusters, to achieve both efficiency and scalability. After introducing background on spatial data management and modern parallel and distributed systems, we present our parallel designs for spatial indexing and spatial join query …

Evaluating Distributed Word Representations For Predicting Missing Words In Sentences, Saniya Saifee

Dissertations and Theses

In recent years, the distributed representation of words in vector space or word embeddings have become very popular as they have shown significant improvements in many statistical natural language processing (NLP) tasks as compared to traditional language models like Ngram. In this thesis, we explored various state-of-the-art methods like Latent Semantic Analysis, word2vec, and GloVe to learn the distributed representation of words. Their performance was compared based on the accuracy achieved when tasked with selecting the right missing word in the sentence, given five possible options. For this NLP task we trained each of these methods using a training corpus …

Theory Development And Pilot Testing Of A New Survey Instrument On Usability By Older Adults, Meriam Caboral-Stevens

Dissertations, Theses, and Capstone Projects

An aging population and the use of technology are two pervasive phenomena that are burgeoning simultaneously. The confluence of these phenomena may present challenges for the older adults that could prevent a successful interface. Barriers and challenges can be addressed by examining the interface between older adults and technology. Usability is described as how well and how easily a user without formal training can interact effectively with the system. A review of the literature shows paucity in nursing theories on usability and the use of technology among older adults. This paper describes the development of a conceptual model - Use …

It-Enabled Coordination In Electronic Markets: An Experimental Investigation Of The Effects Of Social Communication On Group Buyers, Alexander Pelaez

Dissertations, Theses, and Capstone Projects

Coordination, and the mechanisms by which coordination occurs, represents a significant area of study for economic research, and information technology. Technology enhances communication in both speed and quantity of information and when aligned with appropriate tasks can improve decision-making and task performance. Examining the effect of technology based coordination mechanisms on market platforms provides insight into outcomes as represented by buyer surplus and task completion as well as behaviors, such as network structure and emotional attitudes in economic experiments. Drawing on theory from economics and information systems, larger buyer groups should be able to obtain better prices and extract higher …

Framing The Question, "Who Governs The Internet?", Robert J. Domanski

Publications and Research

There remains a widespread perception among both the public and elements of academia that the Internet is “ungovernable”. However, this idea, as well as the notion that the Internet has become some type of cyber-libertarian utopia, is wholly inaccurate. Governments may certainly encounter tremendous difficulty in attempting to regulate the Internet, but numerous types of authority have nevertheless become pervasive. So who, then, governs the Internet? This book will contend that the Internet is, in fact, being governed, that it is being governed by specific and identifiable networks of policy actors, and that an argument can be made as to …

Bass In Your Face: A Case-Study Exploration Of Networked Culture, Samantha Phyllis Kretmar

Dissertations, Theses, and Capstone Projects

Using dubstep DJ Bassnectar as a case-study example, this thesis explores the impact of social networks and mobile connectivity. As evidenced by Bassnectar's digitally based approach to experiencing, distributing, and consuming music, these developments have contributed to the shift to a new model I describe as Networked Culture.

Figure 1 is a video highlighting the Bassnectar concert experience. Figure 2 is an audio clip illustrating the "drop" in dubstep. Figure 3 is another audio clip demonstrating the dubstep sound. Figure 4 is an image of an Ableton Live sound library. Figure 5 is an image of Ableton Live's functionality. Figure …

The Lived Experience Of Young Adult Burn Survivors' Use Of Social Media, Marie S. Giordano

Dissertations, Theses, and Capstone Projects

The purpose of this phenomenological study was to illuminate the meaning of social media use by young adult burn survivors. Five females and four males, aged 20-25, who sustained burns > 25%, were interviewed. Van Manen's (1999) phenomenological methodology provided the framework for this study. The meaning of the context of the lived experience is described in the five essential themes of identity, connectivity, social support, making meaning, and privacy. These young adult burn survivors, having experienced the traumatic effects of a burn during adolescence, use social media as a way of expressing their identity, while being cautious about privacy. Part …

Evolutionary Algorithm Based Approach For Modeling Autonomously Trading Agents, Anil Yaman, Stephen Lucci, Izidor Gertner

Publications and Research

The autonomously trading agents described in this paper produce a decision to act such as: buy, sell or hold, based on the input data. In this work, we have simulated autonomously trading agents using the Echo State Network (ESNs) model. We generate a collection of trading agents that use different trading strategies using Evolutionary Programming (EP). The agents are tested on EUR/ USD real market data. The main goal of this study is to test the overall performance of this collection of agents when they are active simultaneously. Simulation results show that using different agents concurrently outperform a single agent …

Assessing Satellite Image Data Fusion With Information Theory Metrics, James Cross

Dissertations and Theses

A common problem in remote sensing is estimating an image with high spatial and high spectral resolution given separate sources of measurements from satellite instruments, one having each of these desirable properties. This thesis presents a survey of seven families of algorithms which have been developed to provide this common pattern of satellite image data fusion. They are all tested on artificially degraded sets of satellite data from the Moderate Resolution Imaging Spectroradiometer (“MODIS”) with known ideal results, and evaluated using the commonly accepted data fusion assessment metrics spectral angle mapper (“SAM”) and Erreur Relative Globale Adimensionelle de Synth`ese (“ERGAS”). …

Neuroevolution And An Application Of An Agent Based Model For Financial Market, Anil Yaman

Dissertations and Theses

Market prediction is one of the most difficult problems for the machine learning community. Even though, successful trading strategies can be found for the training data using various optimization methods, these strategies usually do not perform well on the test data as expected. Therefore, selection of the correct strategy becomes problematic. In this study, we propose an evolutionary algorithm that produces a variation of trader agents ensuring that the trading strategies they use are different. We discuss that because the selection of the correct strategy is difficult, a variety of agents can be used simultaneously in order to reduce risk. …

Introduction To Gis Using Open Source Software, 4th Ed, Frank Donnelly

Open Educational Resources

This tutorial was created to accompany the GIS Practicum, a day-long workshop offered by the Newman Library at Baruch College CUNY that introduces participants to geographic information systems (GIS) using the open source software QGIS. The practicum introduces GIS as a concept for envisioning information and as a tool for conducting geographic analyses and creating maps. Participants learn how to navigate a GIS interface, how to prepare layers and conduct a basic geographic analysis, and how to create thematic maps. This tutorial was written using QGIS version 1.8 "Lisboa", a cross-platform (Windows, Mac, Linux) desktop GIS software package.

‘What’S In The Niddk Cdr?’—Public Query Tools For The Niddk Central Data Repository, Huaqin Pan, Mary-Anne Ardini, Vesselina Bakalov, Michael Delatte, Paul Eggers, Laxminarayana Ganapathi, Craig R. Hollingsworth, Joshua Levy, Sheping Li, Joseph Pratt, Norma Pugh, Ying Qin, Rebekah Rasooly, Helen Ray, Jean E. Richardson, Amanda Flynn Riley, Susan M. Rogers, Sylvia Tan, Charles F. Turner, Stacie White, Philip C. Cooley

Publications and Research

The National Institute of Diabetes and Digestive Disease (NIDDK) Central Data Repository (CDR) is a web-enabled resource available to researchers and the general public. The CDR warehouses clinical data and study documentation from NIDDK funded research, including such landmark studies as The Diabetes Control and Complications Trial (DCCT, 1983–93) and the Epidemiology of Diabetes Interventions and Complications (EDIC, 1994–present) follow-up study which has been ongoing for more than 20 years. The CDR also houses data from over 7 million biospecimens representing 2 million subjects. To help users explore the vast amount of data stored in the NIDDK CDR, we developed …