Physical Sciences and Mathematics Commons^™

High Throughput Petrochronology And Sedimentary Provenance Analysis By Automated Phase Mapping And Laicpms, Pieter Vermeesch, Martin Rittner, Ethan Petrou, Jenny Omma, Chris Mattinson, Eduardo Garzanti

All Faculty Scholarship for the College of the Sciences

The first step in most geochronological studies is to extract dateable minerals from the host rock, which is time consuming, removes textural context, and increases the chance for sample cross contamination. We here present a new method to rapidly perform in situ analyses by coupling a fast scanning electron microscope (SEM) with Energy Dispersive X-ray Spectrometer (EDS) to a Laser Ablation Inductively Coupled Plasma Mass Spectrometer (LAICPMS) instrument. Given a polished hand specimen, a petrographic thin section, or a grain mount, Automated Phase Mapping (APM) by SEM/EDS produces chemical and mineralogical maps from which the X-Y coordinates of the datable …

Exploring The Historical Earthquakes Preceding The Giant 1960 Chile Earthquake In A Time-Dependent Seismogenic Zone, Marco Cisternas, Matias Carvajal, Robert Wesson, Lisa L. Ely, Nicolás Gorigoitia

All Faculty Scholarship for the College of the Sciences

New documentary findings and available paleoseismological evidence provide both new insights into the historical seismic sequence that ended with the giant 1960 south‐central Chile earthquake and relevant information about the region’s seismogenic zone. According to the few available written records, this region was previously struck by earthquakes of varying size in 1575, 1737, and 1837. We expanded the existing compilations of the effects of the two latter using unpublished first‐hand accounts found in archives in Chile, Peru, Spain, and New England. We further investigated their sources by comparing the newly unearthed historical data and available paleoseismological evidence with the effects …

Polarity Sorting Of Axonal Microtubules: A Computational Study, Erin M. Craig, Howard T. Yeung, Anand N. Rao, Peter W. Baas

All Faculty Scholarship for the College of the Sciences

We present a computational model to test a “polarity sorting” mechanism for microtubule (MT) organization in developing axons. We simulate the motor-based axonal transport of short MTs to test the hypothesis that immobilized cytoplasmic dynein motors transport short MTs with their plus ends leading, so “mal-oriented” MTs with minus-end-out are transported toward the cell body while “correctly” oriented MTs are transported in the anterograde direction away from the soma. We find that dynein-based transport of short MTs can explain the predominately plus-end-out polarity pattern of axonal MTs but that transient attachments of plus-end-directed motor proteins and nonmotile cross-linker proteins are …

Bedrock Geology Of Dfdp-2b, Central Alpine Fault, New Zealand, Virginia Gail Toy, Angela Halfpenny

All Faculty Scholarship for the College of the Sciences

During the second phase of the Alpine Fault, Deep Fault Drilling Project (DFDP) in the Whataroa River, South Westland, New Zealand, bedrock was encountered in the DFDP-2B borehole from 238.5–893.2 m Measured Depth (MD). Continuous sampling and meso- to microscale characterisation of whole rock cuttings established that, in sequence, the borehole sampled amphibolite facies, Torlesse Composite Terrane-derived schists, protomylonites and mylonites, terminating 200–400 m above an Alpine Fault Principal Slip Zone (PSZ) with a maximum dip of 62°. The most diagnostic structural features of increasing PSZ proximity were the occurrence of shear bands and reduction in mean quartz grain sizes. …

Vuv Optical Properties Of Rare Earth Doped Ypo4 Prepared By Different Routes, Zachary Way, Maxwell K. Wallace, Anthony L. Diaz

All Faculty Scholarship for the College of the Sciences

The optical properties of nanocrystalline YPO₄:Ln³⁺ (Ln = Eu, Sm, Tb) prepared via co-precipitation are compared to larger crystallites of YPO₄:Ln³⁺ prepared via traditional solid state reaction. In larger crystals (~330 nm) a distinct peak is observed at 150 nm in the excitation spectra, the intensity of which decreases markedly in smaller crystals (~20 nm). Using excitation and reflectance spectroscopy, host–to–activator energy transfer efficiencies were calculated for Y_1-xPO₄:Ln_x³⁺ (0.01 ≤ x ≤ 0.10). From the transfer efficiency data, we estimate that trapping by Eu³⁺ and Sm^{3+ …}

Polarity Sorting Of Axonal Microtubules: A Computational Study, Erin M. Craig, Howard T. Yeung, Anand N. Rao, Peter W. Baas

All Faculty Scholarship for the College of the Sciences

We present a computational model to test a “polarity sorting” mechanism for microtubule (MT) organization in developing axons. We simulate the motor-based axonal transport of short MTs to test the hypothesis that immobilized cytoplasmic dynein motors transport short MTs with their plus ends leading, so “mal-oriented” MTs with minus-end-out are transported toward the cell body while “correctly” oriented MTs are transported in the anterograde direction away from the soma. We find that dynein-based transport of short MTs can explain the predominately plus-end-out polarity pattern of axonal MTs but that transient attachments of plus-end-directed motor proteins and nonmotile cross-linker proteins are …

Sma Observations Of The Hot Molecular Core Iras 18566+0408, Andrea Silva, Qizhou Zhang, Patricio Sanhueza, Xing Lu, Maria T. Beltran, Cassandra Fallscheer, Henrik Beuther, T. K. Sridharan, Riccardo Cesaroni

All Faculty Scholarship for the College of the Sciences

We present Submillimeter Array (SMA) observations toward the high-mass star-forming region IRAS 18566+0408. Observations at the 1.3 mm continuum and in several molecular line transitions were performed in the compact (2ʺ4 angular resolution) and very-extended (~0ʺ4 angular resolution) configurations. The continuum emission from the compact configuration shows a dust core of 150 M _⊙, while the very-extended configuration reveals a dense (2.6 × 10⁷ cm⁻³) and compact (~4000 au) condensation of 8 M _⊙. We detect 31 molecular transitions from 14 species including CO isotopologues, SO, CH₃OH, OCS, and CH₃CN. Using …

Optical Studies Of The Solution Phase Reduction And Stabilization Of Indigo Tetrasulfonate In Polyelectrolyte Complexes, Becca Hoene, Dion Rivera

All Faculty Scholarship for the College of the Sciences

Ultraviolet-visible (UV-vis) and fluorescence spectroscopy have been used to characterize the polyelectrolyte complexes (PECs) formed when potassium indigo tetrasulfonate (ITS) interacts with poly diallydimethylammonium chloride (PDADMAC) through columbic attraction in the presence of the reducing agent sodium bisulfite, NaHSO3. The PDADMAC facilitates both the reduction of the ITS and the stabilization of the reduced state of the ITS in an atmospheric oxygen environment. Dilutions of the dye solution show that the PEC is stable to dilutions of at least 1 to 1000. UV–vis studies indicate that the reduced ITS (ITSred) forms what is likely a J-aggregate in the presence of …

The Uppermost Mantle Seismic Velocity And Viscosity Structure Of Central West Antarctica, J. P. O'Donnell, K. Selway, A. A. Nyblade, R. A. Brazier, D. A. Wiens, S. Anandakrishnan, R. C. Aster, Audrey D. Huerta, T. Wilson, J. Paul Winberry

All Faculty Scholarship for the College of the Sciences

Accurately monitoring and predicting the evolution of the West Antarctic Ice Sheet via secular changes in the Earth's gravity field requires knowledge of the underlying upper mantle viscosity structure. Published seismic models show the West Antarctic lithosphere to be ∼70–100 km thick and underlain by a low velocity zone extending to at least ∼200 km. Mantle viscosity is dependent on factors including temperature, grain size, the hydrogen content of olivine, the presence of partial melt and applied stress. As seismic wave propagation is particularly sensitive to thermal variations, seismic velocity provides a means of gauging mantle temperature. In 2012, a …

Asymptotically Unbiased Estimation Of A Nonsymmetric Dependence Measure Applied To Sensor Data Analytics And Financial Time Series, Angel Caƫaron, Razvan Andonie, Yvonne Chueh

All Faculty Scholarship for the College of the Sciences

A fundamental concept frequently applied to statistical machine learning is the detection of dependencies between unknown random variables found from data samples. In previous work, we have introduced a nonparametric unilateral dependence measure based on Onicescu’s information energy and a kNN method for estimating this measure from an available sample set of discrete or continuous variables. This paper provides the formal proofs which show that the estimator is asymptotically unbiased and has asymptotic zero variance when the sample size increases. It implies that the estimator has good statistical qualities. We investigate the performance of the estimator for data analysis applications …

Origin Of Primitive Ocean Island Basalts By Crustal Gabbro Assimilation And Multiple Recharge Of Plume-Derived Melts, Anastassia Y. Borisova, Wendy A. Bohrson, Michel Grégoire

All Faculty Scholarship for the College of the Sciences

Chemical Geodynamics relies on a paradigm that the isotopic composition of ocean island basalt (OIB) represents equilibrium with its primary mantle sources. However, the discovery of huge isotopic heterogeneity within olivine‐hosted melt inclusions in primitive basalts from Kerguelen, Iceland, Hawaii and South Pacific Polynesia islands implies open‐system behavior of OIBs, where during magma residence and transport, basaltic melts are contaminated by surrounding lithosphere. To constrain the processes of crustal assimilation by OIBs, we employed the Magma Chamber Simulator (MCS), an energy‐constrained thermodynamic model of recharge, assimilation and fractional crystallization. For a case study of the 21–19 Ma basaltic series, the …

Constructing Interactive Visual Classification, Clustering And Dimension Reduction Models For N-D Data, Boris Kovalerchuk, Dmytro Dovhalets

Computer Science Faculty Scholarship

The exploration of multidimensional datasets of all possible sizes and dimensions is a long-standing challenge in knowledge discovery, machine learning, and visualization. While multiple efficient visualization methods for n-D data analysis exist, the loss of information, occlusion, and clutter continue to be a challenge. This paper proposes and explores a new interactive method for visual discovery of n-D relations for supervised learning. The method includes automatic, interactive, and combined algorithms for discovering linear relations, dimension reduction, and generalization for non-linear relations. This method is a special category of reversible General Line Coordinates (GLC). It produces graphs in 2-D that represent …

The Spectral And Chemical Measurement Of Pollutants On Snow Near South Pole, Antarctica, Kimberly A. Casey, Susan D. Kaspari, S. M. Skiles, K. Kreutz, M. J. Handley

All Faculty Scholarship for the College of the Sciences

Remote sensing of light-absorbing particles (LAPs), or dark colored impurities, such as black carbon (BC) and dust on snow, is a key remaining challenge in cryospheric surface characterization and application to snow, ice, and climate models. We present a quantitative data set of in situ snow reflectance, measured and modeled albedo, and BC and trace element concentrations from clean to heavily fossil fuel emission contaminated snow near South Pole, Antarctica. Over 380 snow reflectance spectra (350–2500 nm) and 28 surface snow samples were collected at seven distinct sites in the austral summer season of 2014–2015. Snow samples were analyzed for …

Cytoplasmic Dynein Transports Axonal Microtubules In A Polarity-Sorting Manner, Anand N. Rao, Ankita Patil, Mark M. Black, Erin M. Craig, Kennith A. Myers, Howard T. Yeung, Peter W. Bass

All Faculty Scholarship for the College of the Sciences

Axonal microtubules are predominantly organized into a plus-end-out pattern. Here, we tested both experimentally and with computational modeling whether a motor-based polarity-sorting mechanism can explain this microtubule pattern. The posited mechanism centers on cytoplasmic dynein transporting plus-end-out and minus-end-out microtubules into and out of the axon, respectively. When cytoplasmic dynein was acutely inhibited, the bidirectional transport of microtubules in the axon was disrupted in both directions, after which minus-end-out microtubules accumulated in the axon over time. Computational modeling revealed that dynein-mediated transport of microtubules can establish and preserve a predominantly plus-end-out microtubule pattern as per the details of the experimental …

The Derivatives Of The Sine And Cosine Functions: A Mini_Primary Source Project For Calculus I Students, Dominic Klyve

Mathematics Faculty Scholarship

This curricular modular guides students through a method of calculating the derivative of the sine and cosine functions using differentials. It is based on one primary source: Leonhard Euler's Institutiones calculi differentialis (Foundations of Differential Calculus) [2], published in 1755.

Software Development For Genome Sequence Analysis, David Farr

Symposium Of University Research and Creative Expression (SOURCE)

The cost of genome sequencing has decreased rapidly, expanding availability for many biological applications (Muir 2016). For example, researchers can now obtain genome sequences from multiple populations under different types of selection. Comparison of these sequences allows for identification of chromosome regions and specific genes associated with adaptive evolution (Kelly 2013). As an increasing number of researchers engage in this type of inquiry, many have created in-house computer scripts to analyze the raw sequence data (e.g., Kelly 2013), creating a gap in both continuity and standardization.

Using a test dataset and preliminary results from an ongoing artificial selection experiment in …

Visual Knowledge Discovery And Machine Learning For Investment Strategy, Antoni Wilinski, Boris Kovalerchuk

All Faculty Scholarship for the College of the Sciences

Knowledge discovery is an important aspect of human cognition. The advantage of the visual approach is in opportunity to substitute some complex cognitive tasks by easier perceptual tasks. However for cognitive tasks such as financial investment decision making this opportunity faces the challenge that financial data are abstract multidimensional and multivariate, i.e., outside of traditional visual perception in 2D or 3D world. This paper presents an approach to find an investment strategy based on pattern discovery in multidimensional space of specifically prepared time series. Visualization based on the lossless Collocated Paired Coordinates (CPC) plays an important role in this approach …

Information Fusion Based Techniques For Hevc, D. G. Fernández, A. A. Del Barrio, Guillermo Botella, Uwe Meyer-Baese, Anke Meyer-Baese, Christos Grecos

All Faculty Scholarship for the College of the Sciences

Aiming at the conflict circumstances of multi-parameter H.265/HEVC encoder system, the present paper introduces the analysis of many optimizations' set in order to improve the trade-off between quality, performance and power consumption for different reliable and accurate applications. This method is based on the Pareto optimization and has been tested with different resolutions on real-time encoders.

Pre-Processing Techniques To Improve Hevc Subjective Quality, D. G. Fernández, A. A. Del Barrio, Guillermo Botella, Uwe Meyer-Baese, Anke Meyer-Baese, Christos Grecos

All Faculty Scholarship for the College of the Sciences

Nowadays, HEVC is the cutting edge encoding standard being the most efficient solution for transmission of video content. In this paper a subjective quality improvement based on pre-processing algorithms for homogeneous and chaotic regions detection is proposed and evaluated for low bit-rate applications at high resolutions. This goal is achieved by means of a texture classification applied to the input frames. Furthermore, these calculations help also reduce the complexity of the HEVC encoder. Therefore both the subjective quality and the HEVC performance are improved.

Actively Forming Kuroko-Type Volcanic-Hosted Massive Sulfide (Vhms) Mineralization At Iheya North, Okinawa Trough, Japan, Christopher J. Yeats, Steven P. Hollis, Angela Halfpenny, Juan-Carlos Corona, Crystal Laflamme, Gordon Southam, Marco Fiorentini, Richard J. Herrington, John Spratt

All Faculty Scholarship for the College of the Sciences

Modern seafloor hydrothermal systems provide important insights into the formation and discovery of ancient volcanic-hosted massive sulfide (VHMS) deposits. In 2010, Integrated Ocean Drilling Program (IODP) Expedition 331 drilled five sites in the Iheya North hydrothermal field in the middle Okinawa Trough back-arc basin, Japan. Hydrothermal alteration and sulfide mineralization is hosted in a geologically complex, mixed sequence of coarse pumiceous volcaniclastic and fine hemipelagic sediments, overlying a dacitic to rhyolitic volcanic substrate. At site C0016, located adjacent to the foot of the actively venting North Big Chimney massive sulfide mound, massive sphalerite-(pyrite-chalcopyrite ± galena)-rich sulfides were intersected (to 30.2% …

Complex Interactive Effects Of Water Mold, Herbicide, And The Fungus Batrachochytrium Dendrobatidis On Pacific Treefrog Hyliola Regilla Hosts, John M. Romansic, James E. Johnson, R. Steven Wagner, Rebecca H. Hill, Christopher A. Gaulke, Vance T. Vredenburg, Andrew R. Blaustein

Biology Faculty Scholarship

Infectious diseases pose a serious threat to global biodiversity. However, their ecological impacts are not independent of environmental conditions. For example, the pathogenic fungus Batrachochytrium dendrobatidis (Bd), which has contributed to population declines and extinctions in many amphibian species, interacts with several environmental factors to influence its hosts, but potential interactions with other pathogens and environmental contaminants are understudied. We examined the combined effects of Bd, a water mold (Achlya sp.), and the herbicide Roundup® Regular (hereafter, Roundup®) on larval Pacific treefrog Hyliola regilla hosts. We employed a 2 wk, fully factorial laboratory experiment with 3 …

Timing Of Mid-Crustal Ductile Extension In The Northern Snake Range Metamorphic Core Complex, Nevada: Evidence From U/Pb Zircon Ages, Jeffrey Lee, Terrence Blackburn, Scott Johnston

All Faculty Scholarship for the College of the Sciences

Metamorphic core complexes within the western U.S. record a history of Cenozoic ductile and brittle extensional deformation, metamorphism, magmatism, and exhumation within the footwalls of high-angle Basin and Range normal faults. In models proposed for the formation of metamorphic core complexes there is a close temporal and spatial link between upper crustal normal faulting, lower crustal ductile extension and flow, and detachment faulting. To provide constraints on the timing of ductile extension in the northern Snake Range metamorphic core complex (Nevada) and thereby test these models, we present new 238U-206Pb dates on zircons from both deformed and undeformed rhyolite dikes …

Unusual Geologic Evidence Of Coeval Seismic Shaking And Tsunamis Shows Variability In Earthquake Size And Recurrence In The Area Of The Giant 1960 Chile Earthquake, M. Cisternas, E. Garrett, R. Wesson, T. Dura, Lisa L. Ely

All Faculty Scholarship for the College of the Sciences

An uncommon coastal sedimentary record combines evidence for seismic shaking and coincident tsunami inundation since AD 1000 in the region of the largest earthquake recorded instrumentally: the giant 1960 southern Chile earthquake (Mw 9.5). The record reveals significant variability in the size and recurrence of megathrust earthquakes and ensuing tsunamis along this part of the Nazca-South American plate boundary. A 500-m long coastal outcrop on Isla Chiloé, midway along the 1960 rupture, provides continuous exposure of soil horizons buried locally by debris-flow diamicts and extensively by tsunami sand sheets. The diamicts flattened plants that yield geologically precise ages to correlate …

Contributions Of Wood Smoke And Vehicle Emissions To Ambient Concentrations Of Volatile Organic Compounds And Particulate Matter During The Yakima Wintertime Nitrate Study, Graham Vanderschelden, Benjamin De Foy, Courtney Herring, Susan D. Kaspari, Tim Vanreken, Bertram Jobson

All Faculty Scholarship for the College of the Sciences

A multiple linear regression (MLR) chemical mass balance model was applied to data collected during an air quality field experiment in Yakima, WA, during January 2013 to determine the relative contribution of residential wood combustion (RWC) and vehicle emissions to ambient pollutant levels. Acetonitrile was used as a chemical tracer for wood burning and nitrogen oxides (NOx) as a chemical tracer for mobile sources. RWC was found to be a substantial source of gas phase air toxics in wintertime. The MLR model found RWC primarily responsible for emissions of formaldehyde (73%), acetaldehyde (69%), and black carbon (55%) and mobile sources …

Implications Of Sea Ice On Southern Ocean Microseisms Detected By A Seismic Array In West Antarctica, Martin J. Pratt, Douglas A. Wiens, J. Paul Winberry, Sridhar Anandakrishnan, Garrett G. Euler

All Faculty Scholarship for the College of the Sciences

The proximity of Southern Ocean storms coupled with seasonal variation in sea ice make Antarctica ideal for the study of microseism sources. We explore frequency-dependent beamforming results using a short-duration, 60 km aperture, broad-band seismic array located on the Whillans Ice Stream, West Antarctica. Locations of single-frequency microseism (13–16 s period) generation are in regions where the continental shelf is ice-free, consistent with previous studies, and show Rayleigh wave sources remaining at consistent backazimuths throughout the duration of the array. Beamforming analysis of daily noise correlations shows that long-period double-frequency microseisms (9–11 s) consist predominantly of Rayleigh waves excited by …

Visualizing Incongruity: Visual Data Mining Strategies For Modeling Humor In Text, Andrew Smigaj

All Graduate Projects

The goal of this project is to investigate the use of visual data mining to model verbal humor. We explored various means of text visualization to identify key featrues of garden path jokes as compared with non jokes. With garden path jokes one interpretation is established in the setup but new information indicating some alternative interpretation triggers some resolution process leading to a new interpretation. For this project we visualize text in three novel ways, assisted by some web mining to build an informal ontology, that allow us to see the differences between garden path jokes and non jokes of …

Estimating The Thickness Of An Ultrahigh-Pressure (Uhp) Terrane: Insights From Phase Equilibria Modelling And Zr-In-Rutile Thermometry, Dulan Area, North Qaidam Terrane, China, David Hernández Uribe

All Master's Theses

The North Qaidam UHP terrane, in western China, exposes minor UHP eclogites hosted by ortho- and paragneisses. In the southeastern part of the terrane, the Dulan area exposes eclogite with the mineral assemblage Grt + Omp ± Ky ± Ph ± Zo ± Qz/Coe. LASS U-Pb analyses of zircons yield weighted mean ages of 463-425 Ma, and REE patterns indicate that these ages record the eclogite-facies metamorphism. Inherited zircon cores yield ages of 928-905 Ma, and REE patterns indicate that the eclogite´s protolith had a magmatic origin. Zr-in-rutile thermometry reveals that Dulan eclogites record peak temperatures of 647-711°C. Spatially distributed …

Catastrophic Landscape Modification From Massive Landslide Tsunamis: An Example From Taan Fiord, Alaska, Colin Bloom

All Master's Theses

The October 17^th 2015 Taan landslide and tsunami generated a high runup of 192 m, nearly an order of magnitude greater than most previously surveyed tsunamis. Extensive modifications observed and documented on several low gradient fan deltas within the fiord make Taan Fiord an excellent laboratory for characterizing geomorphic signatures of a high runup tsunami event. Although interest in this topic is high, most prior post-tsunami surveys are from earthquake-generated tsunamis with relatively low runup, thus the geomorphic signatures of high runup tsunamis or their potential for preservation are uncharacterized. Additionally, clear modifications described during post-tsunami surveys are typically …

150 Years Of Light Absorbing Impurity Deposition On South Cascade Glacier, Washington State Usa, Dan Pittenger

All Master's Theses

Glaciers and seasonal snowpack in Washington State have undergone significant decline over the past 50 years. While warming global temperatures are widely recognized as the cause of glacial decline, the deposition of black carbon (BC) can also contribute to increased melt. BC, commonly referred to as soot, is produced by the incomplete combustion of fossil and biofuels. These particles are subject to atmospheric transport and are deposited on snow by wind and precipitation events. When BC is deposited, it lowers the albedo of the glacial surface resulting in increased energy absorption and melt. We used a 158 m long ice …

Isotope Investigation Of Nitrate In Soils And Agricultural Drain Waters Of The Lower Yakima Valley, Washington, Dallin Jensen

All Master's Theses

Nitrate in the groundwater of the Lower Yakima Valley, Washington has long been known to frequently exceed the EPA maximum contaminant level standard for potable water (10 mg/L), adversely impacting communities with disadvantaged socio-economic status. In this research, nitrogen and oxygen isotopic signatures were determined for nitrate soil leachates and irrigation return flow collected in the Lower Yakima Valley, Washington and compared to previous isotopic studies of nitrate in Central Washington. δ¹⁵N, δ¹⁸O and Δ¹⁷O values are used to constrain sources of to groundwater. Isotope signatures for nitrate from soil leachate largely overlapped with …