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Full-Text Articles in Physical Sciences and Mathematics

Comparative Gene Expression Profiles Between Heterotic And Non-Heterotic Hybrids Of Tetraploid Medicago Sativa, Xuehui Li, Yanling Wei, Dan Nettleton, E. Charles Brummer Jul 2019

Comparative Gene Expression Profiles Between Heterotic And Non-Heterotic Hybrids Of Tetraploid Medicago Sativa, Xuehui Li, Yanling Wei, Dan Nettleton, E. Charles Brummer

Dan Nettleton

Background: Heterosis, the superior performance of hybrids relative to parents, has clear agricultural value, but its genetic control is unknown. Our objective was to test the hypotheses that hybrids expressing heterosis for biomass yield would show more gene expression levels that were different from midparental values and outside the range of parental values than hybrids that do not exhibit heterosis.

Results: We tested these hypotheses in three Medicago sativa (alfalfa) genotypes and their three hybrids, two of which expressed heterosis for biomass yield and a third that did not, using Affymetrix M. truncatula GeneChip arrays. Alfalfa hybridized to approximately 47% …


The Role Of Environmental Filtering In Structuring Appalachian Tree Communities: Topographic Influences On Functional Diversity Are Mediated Through Soil Characteristics, Julia I. Chapman, Ryan W. Mcewan Jan 2018

The Role Of Environmental Filtering In Structuring Appalachian Tree Communities: Topographic Influences On Functional Diversity Are Mediated Through Soil Characteristics, Julia I. Chapman, Ryan W. Mcewan

Ryan McEwan

Identifying the drivers of community assembly has long been a central goal in ecology, and the development of functional diversity indices has provided a new way of detecting the influence of environmental gradients on biotic communities. For an old-growth Appalachian forest, we used path analysis to understand how patterns of tree functional diversity relate to topography and soil gradients and to determine whether topographic effects are mediated through soil chemistry. All of our path models supported the idea of environmental filtering: stressful areas (high elevation, low soil moisture, low soil nutrients) were occupied by communities of low functional diversity, which …


A Contribution To The Vascular Flora Of The Sequatchie Valley Within Sequatchie County, Tennessee, John Richard Evans Feb 2015

A Contribution To The Vascular Flora Of The Sequatchie Valley Within Sequatchie County, Tennessee, John Richard Evans

John Evans

The vascular flora of the Sequatchie Valley within Sequatchie County, Tennessee was studied for three growing seasons from 2008 through 2010. The Sequatchie Valley is located within the southeastern portion of the Cumberland Plateau and is generally considered to be part of the Cumberland Plateau Physiographic Province. Nevertheless, a number of geological and ecological factors distinguish the Sequatchie Valley from the elevated Cumberland Plateau, suggesting that the floristic composition of the valley may be different from the surrounding region. Although several previous floristic studies have been conducted on the plateau surface, very little attention has been given to the Sequatchie …


Predicting Flavonoid Ugt Regioselectivity, Arthur R. Jackson, Debra Knisley, Cecilia Mcintosh, Phillip Pfeiffer Dec 2010

Predicting Flavonoid Ugt Regioselectivity, Arthur R. Jackson, Debra Knisley, Cecilia Mcintosh, Phillip Pfeiffer

Cecilia A. McIntosh

Machine learning was applied to a challenging and biologically significant protein classification problem: the prediction of avonoid UGT acceptor regioselectivity from primary sequence. Novel indices characterizing graphical models of residues were proposed and found to be widely distributed among existing amino acid indices and to cluster residues appropriately. UGT subsequences biochemically linked to regioselectivity were modeled as sets of index sequences. Several learning techniques incorporating these UGT models were compared with classifications based on standard sequence alignment scores. These techniques included an application of time series distance functions to protein classification. Time series distances defined on the index sequences were …


Responses Of Plants In Polar Regions To Uvb Exposure : A Meta-Analysis, K. K. Newsham, Sharon A. Robinson Nov 2009

Responses Of Plants In Polar Regions To Uvb Exposure : A Meta-Analysis, K. K. Newsham, Sharon A. Robinson

Sharon Robinson

We report a meta-analysis of data from 34 field studies into the effects of UV-B radiation on Arctic and Antarctic bryophytes and angiosperms. The studies measured plant responses to decreases in UV-B radiation under screens, natural fluctuations in UV-B irradiance, or increases in UV-B radiation applied from fluorescent UV lamps. Exposure to UV-B radiation was found to increase the concentrations of UV-B absorbing compounds in leaves or thalli by 7% and 25% (expressed on a mass or area basis, respectively). UV-B exposure also reduced aboveground biomass and plant height by 15% and 10%, respectively, and increased DNA damage by 90%. …