Physical Sciences and Mathematics Commons^™

Analysis Of Iron Sources In Antarctic Continental Shelf Waters, Michael S. Dinniman, Pierre St-Laurent, Kevin R. Arrigo, Eileen E. Hofmann, Gert L. Van Dijken

CCPO Publications

Previous studies showed that satellite‐derived estimates of chlorophyll a in coastal polynyas over the Antarctic continental shelf are correlated with the basal melt rate of adjacent ice shelves. A 5‐km resolution ocean/sea ice/ice shelf model of the Southern Ocean is used to examine mechanisms that supply the limiting micronutrient iron to Antarctic continental shelf surface waters. Four sources of dissolved iron are simulated with independent tracers, assumptions about the source iron concentration for each tracer, and an idealized summer biological uptake. Iron from ice shelf melt provides about 6% of the total dissolved iron in surface waters. The contribution from …

Feeding Time: How Nutrients Drive Phytoplankton Growth, Brianna Stanley

Reports

Grades: 9-12 Subjects: Biology | Environmental Science | Oceanography

This lesson plan helps students make the connection between the amount of nutrients present in an ecosystem and the resulting growth of phytoplankton in our coastal waters. This lesson takes this concept a step deeper, by exploring how the proportions of nitrogen and phosphorus in the environment create the ideal conditions for phytoplankton growth. Students will explore the concept of limiting factors and will work on both their graphing skills and their ability to compare ratios.

Ice Algae Resource Utilization By Benthic Macro- And Megafaunal Communities On The Pacific Arctic Shelf Determined Through Lipid Biomarker Analysis, Chelsea Wegner Koch, Lee W. Cooper, Jacqueline M. Grebmeier, Karen Frey, Thomas A. Brown

Geography

We studied ice algae utilization by benthic fauna from the northern Bering and Chukchi Seas using highly branched isoprenoid (HBI) biomarkers. We assessed whether various food acquisition strategies influence the observed HBI signatures. The proportion of phytoplankton to ice algae-sourced HBIs was determined through the H-Print approach that is presumed to reflect the percentage of sea ice organic carbon (iPOC) incorporated into tissues, relative to phytoplankton organic carbon. Cluster analysis separated 3 groups based on location and feeding strategy that were significantly influenced by annual sea ice persistence. Ice algae utilization was most significant in the northeast Chukchi Sea, where …

Temporal And Spatial Scales Of Correlation In Marine Phytoplankton Communities, A. M. Kuhn, S. Dutkiewicz, O. Jahn, Sophie Clayton, T. A. Rynearson, M. R. Mazloff, A. D. Barton

OES Faculty Publications

Ocean circulation shapes marine phytoplankton communities by setting environmental conditions and dispersing organisms. In addition, processes acting on the water column (e.g., heat fluxes and mixing) affect the community structure by modulating environmental variables that determine in situ growth and loss rates. Understanding the scales over which phytoplankton communities vary in time and space is key to elucidate the relative contributions of local processes and ocean circulation on phytoplankton distributions. Using a global ocean ecosystem model, we quantify temporal and spatial correlation scales for phytoplankton phenotypes with diverse functional traits and cell sizes. Through this analysis, we address these questions: …

Seaflow Data V1, High-Resolution Abundance, Size And Biomass Of Small Phytoplankton In The North Pacific, François Ribalet, Chris Berthiaume, Annette Hynes, Jarred Swalwell, Michael Carlson, Sophie Clayton, Gwenn Hennon, Camille Poirier, Eric Shimabukuro, Angelicque White, E. Virginia Armhurst

OES Faculty Publications

SeaFlow is an underway flow cytometer that provides continuous shipboard observations of the abundance and optical properties of small phytoplankton (μm in equivalent spherical diameter, ESD). Here we present data sets consisting of SeaFlow-based cell abundance, forward light scatter, and pigment fluorescence of individual cells, as well as derived estimates of ESD and cellular carbon content of picophytoplankton, which includes the cyanobacteria Prochlorococcus, Synechococcus and small-sized Crocosphaera (μm ESD), and picophytoplankton and nanophytoplankton (2–5 μm ESD). Data were collected in surface waters (≈5 m depth) from 27 oceanographic cruises carried out in the Northeast Pacific Ocean between 2010 and 2018. …

The Stability Of Temperate Lakes Under The Changing Climate, Aleksey Paltsev

Electronic Thesis and Dissertation Repository

There is a collective prediction among ecologists that climate change will enhance phytoplankton biomass in temperate lakes. Yet there is noteworthy variation in the structure and regulating functions of lakes to make this statement challengeable and, perhaps, inaccurate. To generate a common understanding on the trophic transition of lakes, I examined the interactive effects of climate change and landscape properties on phytoplankton biomass in 12,644 lakes located in relatively intact forested landscapes. Chlorophyll-a (Chl-a) concentration was used as a proxy for phytoplankton biomass. Chl-a concentration was obtained via analyzing Landsat satellite imagery data over a 28-year period (1984-2011) and using …

Associated Dataset: Modeling The Seasonal Cycle Of Iron And Carbon Fluxes In The Amundsen Sea Polynya, Antarctica, Pierre St-Laurent

Data

This dataset features the results from the numerical simulation described in the associated publication (St-Laurent et al.). The simulation results are in the standard, self-documented NetCDF format (extension .nc); see https://www.unidata.ucar.edu/software/netcdf/ for more information. Files in this format can be manipulated and displayed by a wide range of freely available software. The results from the simulation are divided into monthly files (ocean_avg_0001.nc to ocean_avg_0098.nc). Each file holds 30 days worth of time-averaged daily model fields, from January 2006 to December 2013. The dataset also includes the forcings used in the model calculation (in the same format as above). Detailed information …

Ecological Response Of Phytoplankton To The Oil Spills In The Oceans, Danling Tang, Jing Sun, Li Zhou, Sufen Wang, Ramesh P. Singh, Gang Pan

Mathematics, Physics, and Computer Science Faculty Articles and Research

Oil spills in oceans have substantial influence on marine ecosystems. This study investigates 21 oil spills in the world. Analyzing Chlorophyll-a (Chl-a) from Moderate Resolution Imaging Spectroradiomerer (MODIS) data after Penglai oil spills on 4 June 2011, found a bloom with peak value of Chl-a (13.66 mg m⁻³) spread over an area of 800 km² during 18–25 June 2011, and a pronounced increase in the monthly Chl-a concentration (6.40 mg m⁻³) on June 2012 in the Bohai Sea. Out of the 21 oil spills, 14 blooms were observed, while 11 …

Iron Fertilization With Enhanced Phytoplankton Productivity Under Minimal Sulfur Compounds And Grazing Control Analysis In Hnlc Region, Tai-Jin Kim, G. H. Hong, D. G. Kim Kim, Mark Baskaran

Environmental Science and Geology Faculty Research Publications

The present study investigated quantitatively the significance of HNLC (high-nutrient low-chlorophyll) regions and its grazing control with the im- proved iron fertilization for climate change. The limitation of iron (Fe) for phytoplankton growth in HNLC regions was confirmed by sulfur compounds (S) such as volcanic ash and hydrogen sulfide (H2S) in batch cultures, whose chemical sediment of Fe3S4 showed 4.06 wt%. The technologies developed for iron fertilization since 1993 till now were not practical to provide sufficient amounts of bioavailable iron due to sedimentary iron sulfides induced by undersea volcanic sulfur compounds. The proposed technology for iron fertilization was improved …

Modeling The Seasonal Cycle Of Iron And Carbon Fluxes In The Amundsen Sea Polynya, Antarctica, P. St-Laurent, P. L. Yager, R. M. Sherrell, H. Oliver, M. S. Dinniman, S. E. Stammerjohn

CCPO Publications

The Amundsen Sea Polynya (ASP) is distinguished by having the highest net primary production per unit area in the coastal Antarctic. Recent studies have related this high productivity to the presence of fast-melting ice shelves, but the mechanisms involved are not well understood. In this study we describe the first numerical model of the ASP to represent explicitly the ocean-ice interactions, nitrogen and iron cycles, and the coastal circulation at high resolution. The study focuses on the seasonal cycle of iron and carbon, and the results are broadly consistent with field observations collected during the summer of 2010–2011. The simulated …

A Climatological Dataset Of Nutrient, Chlorophyll, And Particulate Matter Distributions On The Ross Sea Continental Shelf Derived From Cruise-Based Measurements Spanning 1967 To 2016, Walker O. Smith Jr., Daniel E. Kaufman

Data

This dataset includes data used in the publication Smith and Kaufman (2018), Progress in Oceanography, which examines the temporal and spatial distributions of nutrients and particulate matter in the Ross Sea continental Shelf using cruise-based observations, and compares the resulting annual productivity estimates with previously reported satellite-based estimates. Specifically, these data represent distributions of nutrients, chlorophyll, particulate organic carbon, particulate organic nitrogen, and biogenic silica that were compiled from 42 cruises (from 1967 - 2016) to the Ross Sea continental shelf to generate a comprehensive climatological dataset for November, December, January, and February. This climatology provides a novel look at …

Ms Analysis Of A Dilution Series Of Bacteria: Phytoplankton To Improve Detection Of Low Abundance Bacterial Peptides, Emma Timmins-Schiffman, Molly P. Mikan, Ying Sonia Ting, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. …

Toward Deeper Development Of Biogeochemical-Argo Floats, Xiao Gang Xing, Hervé Claustre, Emmanuel Boss, Fei Chai

Marine Sciences Faculty Scholarship

Following a series of publications reporting on successful long-term deployments of profiling floats with various biogeochemical sensors (e.g. Boss et al. 2008; Johnson, Riser, and Karl 2010; Körtzinger et al. 2004) and years of international coordination, the BGC-Argo program was officially launched in October 2016, as an extension of the Argo Program (Biogeochemical-Argo Planning Group 2016; Johnson and Claustre 2016). The objectives of the BGC-Argo Program are to establish and sustain an array with 1000 floats within five years. Similar to Argo, this is a coordinated, voluntary, distributed, and multinational network of profiling floats, but with a significant addition of …

Long-Term Monitoring In Central Puget Sound: Are Local Climate Anomalies Impacting Phytoplankton Populations?, Gabriela Hannach, Lyndsey M. Swanson, Kimberle Stark

Salish Sea Ecosystem Conference

Puget Sound is a large and productive estuarine system at the southern end of the Salish Sea. King County’s comprehensive, long-term marine monitoring program tracks water quality in Puget Sound’s Central Basin through year-round collection of data for a suite of physical, chemical and biological parameters. Phytoplankton monitoring began with traditional microscopy methods in 2008, and expanded to include a particle imaging system in 2014. These data are critical to assess how changes from climate, physical conditions and other stressors linked to anthropogenic activity from the region’s growing population may impact the Sound’s biodiversity and trophic structure. Currently, twice-monthly surface …

Seasonal Dynamics Of Oceanographic Conditions, Phytoplankton, And Zooplankton In The Malaspina Strait, Strait Of Georgia, Svetlana Esenkulova, Karyn Suchy, Richard Ian Perry, Kelly Young, Maycira Costa, Ryan Flagg, Moira Galbraith, Isobel Pearsall

Salish Sea Ecosystem Conference

Plankton dynamics in the Salish Sea may directly impact resident and migratory fish populations that are of major economic importance in the region. The Malaspina Strait in the northern Salish Sea is of particular interest as it is an important migration route for juvenile salmon. Here, we present data collected at three stations in the Malaspina Strait as part of the Citizen Science initiative of the Salish Sea Marine Survival Project. Sampling was conducted at bi-monthly (or higher) frequency from February to October, 2015 to 2017. Relationships between the regional hydrography, environmental parameters (temperature, salinity, dissolved oxygen, etc.), nutrient concentrations, …

Salish Sea Model Ecosystem - Lower Trophic: Episodic Nutrient Supply In The Northern Strait Of Georgia, Elise Olson, Susan E. Allen

Salish Sea Ecosystem Conference

Salish Sea Model Ecosystem - Lower Trophic (SMELT) is a three-dimensional biogeochemical model coupled to a NEMO-based physical model of the Salish Sea, run operationally at UBC as part of the SalishSeaCast system. In this presentation, we will first establish the model's skill at reproducing nitrate concentrations by comparison with data from the Pacific Salmon Foundation’s citizen science program and Institute of Ocean Sciences repeat surveys. We will then discuss episodic nitrate supply to the surface waters of the northwest Strait of Georgia. This phenomenon is evident as a region of elevated mean (March-November) and standard deviation (April-September) of surface …

How Did Large Scale Climate Anomalies Impact 2015 Phytoplankton Blooms In Puget Sound?, Juhi Lafuente, Christopher Krembs, S. L. Albertson, Allison Brownlee, Julia Bos, Laura Hermanson, Mya Keyzers

Salish Sea Ecosystem Conference

The Washington State Department of Ecology has been routinely monitoring marine water quality throughout the Puget Sound since 1973. An established historic baseline from 1999 to 2008 allows us to examine how water quality varies year to year as a result of both natural and human influences. The recent large scale climate anomaly, the Blob, impacted this region when a mass of warm water entered Puget Sound in fall 2014. In conjunction with higher than normal air temperatures, patterns of estuarine circulation and stratification were regionally altered in Puget Sound. Changes to these physical patterns affect ecosystem functions starting at …

Soundtoxins: A Puget Sound Harmful Algae Monitoring Partnership, Teri King, Lyndsey Claassen, Jerry Borchert, Vera Trainer

Salish Sea Ecosystem Conference

SoundToxins is a diverse partnership of aquaculture businesses, federal, tribal, state, and local governments, education institutions, and Puget Sound residents that monitor for harmful algae in Puget Sound, managed by NOAA’s Northwest Fisheries Science Center and Washington Sea Grant. The intensively trained partners provide early warning of harmful algal bloom (HAB) events by evaluating water samples gathered weekly from 35 stations throughout Puget Sound looking specifically for Dinophysis, Alexandrium, Pseudo-nitschia and Azadinium and alerting health and natural resource agencies of their presence and concentration. The online database and mapping allows for near-real time viewing of data entered by SoundToxins partners …

Has Primary Productivity Declined In The Strait Of Georgia Since The 1970s?, Sophia Johannessen

Salish Sea Ecosystem Conference

A strong decline in phytoplankton productivity has been proposed as a principal cause of the decline in salmon survival in the Strait of Georgia over the last four decades. The best estimate of total annual primary productivity in the Strait in the 1970s was 280 gC m-2 yr-1 (Harrison et al., 1983). We tested whether or not primary productivity had declined since that time by calculating recent productivity from regional nitrogen budgets. We constructed the budgets using measurements (collected 2001-2011) of dissolved and particulate nitrogen and stable isotopes of nitrogen in seawater, river water, sinking particles, bottom sediments, atmospheric deposition, …

Harmful Algae In The Strait Of Georgia, Citizen Science Data, Svetlana Esenkulova, Isobel Pearsall

Salish Sea Ecosystem Conference

The Citizen Science Program was initiated by the Pacific Salmon Foundation, Fisheries and Oceans Canada, and Ocean Networks Canada in 2015. This Program was designed to achieve oceanographic monitoring of the Strait of Georgia on temporal and spatial scale that had never been done before. Samples and measurements were taken at approximately 80 sites on a bi-monthly (or higher) frequency from February to October, 2015 to 2017. This presentation will be focused on the spatial and temporal distribution of harmful algae based on the analysis of about 5000 phytoplankton samples. Preliminary results indicate that during the sampling period in the …

Unraveling Phytoplankton Community Dynamics In The Northern Chukchi Sea Under Sea-Ice-Covered And Sea-Ice-Free Conditions, A. R. Neeley, L. A. Harris, K. E. Frey

Geography

The timing of sea ice retreat, light availability, and sea surface stratification largely control the phytoplankton community composition in the Chukchi Sea. This region is experiencing a significant warming trend, an overall decrease in sea ice cover, and a documented decline in annual sea ice persistence and thickness over the past several decades. The consequences of earlier seasonal sea ice retreat and a longer sea-ice-free season on phytoplankton community composition warrant investigation. We applied multivariate statistical techniques to elucidate the mechanisms that relate environmental variables to phytoplankton community composition in the Chukchi Sea using data collected during a single field …

Interpreting Mosaics Of Ocean Biogeochemistry, Andrea Fassbender, A. Bourbonnais, Sophie Clayton, P. Gaube, M. Ormand, P.J.S. Franks, M. A. Altabet, D.J. Mcgillicuddy Jr.

OES Faculty Publications

Advances in technology and modeling capabilities are driving a surge in progress in our understanding of how ocean ecosystems mix and mingle on medium to small scales.

Climate Change Impacts On Southern Ross Sea Phytoplankton Composition, Productivity, And Export, Daniel E. Kaufman, Marjorie A. M. Friedrichs, Walker O. Smith Jr., Eileen E. Hofmann, Michael S. Dinniman, John C. P. Hemmings

VIMS Articles

The Ross Sea, a highly productive region of the Southern Ocean, is expected to experience warming during the next century along with reduced summer sea ice concentrations and shallower mixed layers. This study investigates how these climatic changes may alter phytoplankton assemblage composition, primary productivity, and export. Glider measurements are used to force a one-dimensional biogeochemical model, which includes diatoms and both solitary and colonial forms of Phaeocystis antarctica. Model performance is evaluated with glider observations, and experiments are conducted using projections of physical drivers for mid-21st and late-21st century. These scenarios reveal a 5% increase in primary productivity …

Burundi : Water Scarcity, Isabel Salas

Global Public Health

Burundi is located near the African great lakes region of East Africa. This country is one of the poorest and hungriest countries throughout the world because of this they are facing multiple problems with communicable disease. These families are seeing a reduction in the amount of water available to them and based on this they are receiving water from external sources such as wells and lakes. Most of the water throughout Burundi is contaminated with Phytoplankton which increase cholera outbreaks in this area. It has also been shown that uranium impacts the water throughout the wells and lakes. Both of …

Associated Dataset: Climate Change Impacts On Southern Ross Sea Phytoplankton Composition, Productivity And Export, Daniel E. Kaufman, Marjorie A.M. Friedrichs, Walker O. Smith Jr., Eileen E. Hofmann, Michael S. Dinniman, John C.P. Hemmings

Data

This dataset includes data used in the publication Kaufman et al., 2017, JGR-Oceans, which investigates how these climatic changes in the Ross Sea, Antarctica, may alter phytoplankton composition, primary productivity and export. A one-dimensional version of the Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification was adapted for use in the Ross Sea (MEDUSA-RS). Glider measurements were used to force MEDUSA-RS, which includes diatoms and both solitary and colonial forms of Phaeocystis antarctica. Model performance was evaluated with glider observations, and experiments were conducted using projections of physical drivers for mid- and late-21st century. Additional scenarios examined the …

Sea Surface Temperature Rises Shift Migration Patterns Due To Ecosystem Changes, Alexia Skrbic, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

The continuing climate change is negatively impacting ecosystems, specifically oceans which are declining and food webs are being altered by the increase of greenhouse gases. The increase of the carbon dioxide and other greenhouse gases is increasing sea surface temperature of the world’s oceans. Certain organisms lower on the food chain like phytoplankton and zooplankton are directly affected by the warming which alters how they process nutrients and their productivity. The limited amount of these primary producers in the oceans and specifically the location they inhabit directly affects all the organisms above them on the food chain. Several marine animals …

Underway Spectrophotometry Along The Atlantic Meridional Transect Reveals High Performance In Satellite Chlorophyll Retrievals, Robert J.W. Brewin, Giorgio Dall'olmo, Silvia Pardo, Virginie Van Dongen-Vogels, Emmanuel S. Boss

Marine Sciences Faculty Scholarship

To evaluate the performance of ocean-colour retrievals of total chlorophyll-a concentration requires direct comparison with concomitant and co-located in situ data. For global comparisons, these in situ match-ups should be ideally representative of the distribution of total chlorophyll-a concentration in the global ocean. The oligotrophic gyres constitute the majority of oceanic water, yet are under-sampled due to their inaccessibility and under-represented in global in situ databases. The Atlantic Meridional Transect (AMT) is one of only a few programmes that consistently sample oligotrophic waters. In this paper, we used a spectrophotometer on two AMT cruises (AMT19 and AMT22) to continuously measure …

Why Was There A Harmful Algal Bloom In 2015: The Relative Growth Of Toxic And Non-Toxic Diatoms As A Function Of Temperature, Ariana M. Jensen, Meagan P. Beley-Finnemore, Christopher E. Ikeda, William P. Cochlan

STAR Program Research Presentations

A coastwide bloom of the toxigenic diatom Pseudo-nitzschia in 2015 resulted in the largest recorded outbreak and unprecedented levels of the neurotoxin, domoic acid (DA), along the North American west coast. The scientific community has suggested that warmer ocean temperatures were the main cause of this harmful algal bloom (HAB), but little scientific evidence to support the relationship between temperature, and the growth and toxicity of Pseudo-nitzschia has been provided for local isolates of these diatoms. To gain insight into bloom dynamics, a laboratory study was conducted to examine the growth of toxic and non-toxic phytoplankton species at a range …

Preferential Depletion Of Zinc Within Costa Rica Upwelling Dome Creates Conditions For Zinc Co-Limitation Of Primary Production, P. Dreux Chappell, Jagruti Vedmati, Karen E. Selph, Heather A. Cyr, Bethany D. Jenkins, Michael R. Landry, James W. Moffett

OES Faculty Publications

The Costa Rica Dome (CRD) is a wind-driven feature characterized by high primary production and an unusual cyanobacterial bloom in surface waters. It is not clear whether this bloom arises from top-down or bottom-up processes. Several studies have argued that trace metal geochemistry within the CRD contributes to the composition of the phytoplankton assemblages, since cyanobacteria and eukaryotic phytoplankton have different transition metal requirements. Here, we report that total dissolved zinc (Zn) is significantly depleted relative to phosphate (P) and silicate (Si) within the upper water column of the CRD compared with other oceanic systems, and this may create conditions …

Synchronicity Between Ice Retreat And Phytoplankton Bloom In Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, Julienne Stroeve

Marine Science Faculty Publications

Phytoplankton in Antarctic coastal polynyas has a temporally short yet spatially variant growth window constrained by ice cover and day length. Using 18‐year satellite measurements (1997–2015) of sea ice and chlorophyll concentrations, we assessed the synchronicity between the spring phytoplankton bloom and light availability, taking into account the ice cover and the incident solar irradiance, for 50 circum‐Antarctic coastal polynyas. The synchronicity was strong (i.e., earlier ice‐adjusted light onset leads to earlier bloom and vice versa) in most of the western Antarctic polynyas but weak in a majority of the eastern Antarctic polynyas. The west‐east asymmetry is related to sea …