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University of Vermont

Genetic diversity

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Editorial: Wild Plants As Source Of New Crops, Eric Von Wettberg, Thomas M. Davis, Petr Smýkal Sep 2020

Editorial: Wild Plants As Source Of New Crops, Eric Von Wettberg, Thomas M. Davis, Petr Smýkal

College of Agriculture and Life Sciences Faculty Publications

No abstract provided.


Genetic Diversity Of Chamaecrista Fasciculata (Fabaceae) From The Usda Germplasm Collection, Erika Bueno, Ted Kisha, Sonja L. Maki, Eric J.B. Von Wettberg, Susan Singer Mar 2019

Genetic Diversity Of Chamaecrista Fasciculata (Fabaceae) From The Usda Germplasm Collection, Erika Bueno, Ted Kisha, Sonja L. Maki, Eric J.B. Von Wettberg, Susan Singer

College of Agriculture and Life Sciences Faculty Publications

Objective: Chamaecrista fasciculata is a widespread annual legume across Eastern North America, with potential as a restoration planting, biofuel crop, and genetic model for non-papillinoid legumes. As a non-Papilinoid, C. fasciculata, belongs to the Caesalpiniod group in which nodulation likely arose independently of the nodulation in Papilinoid and Mimosoid legumes. Thus, C. fasciculata is an attractive model system for legume evolution. In this study, we describe population structure and genetic diversity among 32 USDA germplasm accessions of C. fasciculata using 317 AFLP markers developed from 12 primer pairs, to assess where geographically there is the most genetic variation. Results: We …


Capturing Variation In Lens (Fabaceae): Development And Utility Of An Exome Capture Array For Lentil, Ezgi Ogutcen, Larissa Ramsay, Eric Bishop Von Wettberg, Kirstin E. Bett Jun 2018

Capturing Variation In Lens (Fabaceae): Development And Utility Of An Exome Capture Array For Lentil, Ezgi Ogutcen, Larissa Ramsay, Eric Bishop Von Wettberg, Kirstin E. Bett

College of Agriculture and Life Sciences Faculty Publications

Premise of the Study: Lentil is an important legume crop with reduced genetic diversity caused by domestication bottlenecks. Due to its large and complex genome, tools for reduced representation sequencing are needed. We developed an exome capture array for use in various genetic diversity studies. Methods: Based on the CDC Redberry draft genome, we developed an exome capture array using multiple sources of transcript resources. The probes were designed to target not only the cultivated lentil, but also wild species. We assessed the utility of the developed method by applying the generated data set to population structure and phylogenetic analyses. …


The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg Jan 2018

The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

Humans have domesticated hundreds of plant and animal species as sources of food, fiber, forage, and tools over the past 12,000 years, with manifold effects on both human society and the genetic structure of the domesticated species. The outcomes of crop domestication were shaped by selection driven by human preferences, cultivation practices, and agricultural environments, as well as other population genetic processes flowing from the ensuing reduction in effective population size. It is obvious that any selection imposes a reduction of diversity, favoring preferred genotypes, such as nonshattering seeds or increased palatability. Furthermore, agricultural practices greatly reduced effective population sizes …