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Full-Text Articles in Medicine and Health Sciences
Genetic Diversity, Population Structure, And Genetic Correlation With Climatic Variation In Chickpea (Cicer Arietinum) Landraces From Pakistan, Syed Gul Abbas Shah Sani, Peter L. Chang, Asif Zubair, Noelia Carrasquilla-Garcia, Matilde Cordeiro, Ramachandra Varma Penmetsa, M. Farooq H. Munis, Sergey V. Nuzhdin, Douglas R. Cook, Eric J. Von Wettberg
Genetic Diversity, Population Structure, And Genetic Correlation With Climatic Variation In Chickpea (Cicer Arietinum) Landraces From Pakistan, Syed Gul Abbas Shah Sani, Peter L. Chang, Asif Zubair, Noelia Carrasquilla-Garcia, Matilde Cordeiro, Ramachandra Varma Penmetsa, M. Farooq H. Munis, Sergey V. Nuzhdin, Douglas R. Cook, Eric J. Von Wettberg
College of Agriculture and Life Sciences Faculty Publications
Chickpea (Cicer arietinum L.) production in arid regions, such as those predominant in Pakistan, faces immense challenges of drought and heat stress. Addressing these challenges is made more difficult by the lack of genetic and phenotypic characterization of available cultivated varieties and breeding materials. Genotyping-by-sequencing offers a rapid and cost-effective means to identify genome-wide nucleotide variation in crop germplasm. When combined with extended crop phenotypes deduced from climatic variation at sites of collection, the data can predict which portions of genetic variation might have roles in climate resilience. Here we use 8113 single nucleotide polymorphism markers to determine genetic variation …
A Cross-Country Analysis Of Climate Shocks And Smallholder Food Insecurity, Meredith T. Niles, Jonathan D. Salerno
A Cross-Country Analysis Of Climate Shocks And Smallholder Food Insecurity, Meredith T. Niles, Jonathan D. Salerno
College of Agriculture and Life Sciences Faculty Publications
Future climate changes will affect smallholder farmers in the developing world, posing threats to household food security. Nevertheless, there remains limited comparable evidence across multiple countries and regions regarding the global extent of climate shocks affecting smallholder food security. We examine data from 5,299 household surveys across 15 countries in Latin America, Africa and South Asia to assess the extent of climate shocks and their association with food insecurity, as well as what strategies may help buffer against climate shocks. We find that 71% of households reported experiencing a climate shock in the previous five years. Fifty-four percent reported experiencing …
The Climate-Smart Village Approach: Framework Of An Integrative Strategy For Scaling Up Adaptation Options In Agriculture, Pramod K. Aggarwal, Andy Jarvis, Bruce M. Campbell, Robert B. Zougmoré, Arun Khatri-Chhetri, Sonja J. Vermeulen, Ana Maria Loboguerrero, Leocadio S. Sebastian, James Kinyangi, Osana Bonilla-Findji, Maren Radeny, John Recha, Deissy Martinez-Baron, Julian Ramirez-Villegas, Sophia Huyer, Philip Thornton, Eva Wollenberg, James Hansen, Patricia Alvarez-Toro, Andrés Aguilar-Ariza, David Arango-Londoño, Victor Patiño-Bravo, Ovidio Rivera, Mathieu Ouedraogo, Bui Tan Yen
The Climate-Smart Village Approach: Framework Of An Integrative Strategy For Scaling Up Adaptation Options In Agriculture, Pramod K. Aggarwal, Andy Jarvis, Bruce M. Campbell, Robert B. Zougmoré, Arun Khatri-Chhetri, Sonja J. Vermeulen, Ana Maria Loboguerrero, Leocadio S. Sebastian, James Kinyangi, Osana Bonilla-Findji, Maren Radeny, John Recha, Deissy Martinez-Baron, Julian Ramirez-Villegas, Sophia Huyer, Philip Thornton, Eva Wollenberg, James Hansen, Patricia Alvarez-Toro, Andrés Aguilar-Ariza, David Arango-Londoño, Victor Patiño-Bravo, Ovidio Rivera, Mathieu Ouedraogo, Bui Tan Yen
Rubenstein School of Environment and Natural Resources Faculty Publications
Increasing weather risks threaten agricultural production systems and food security across the world. Maintaining agricultural growth while minimizing climate shocks is crucial to building a resilient food production system and meeting developmental goals in vulnerable countries. Experts have proposed several technological, institutional, and policy interventions to help farmers adapt to current and future weather variability and to mitigate greenhouse gas (GHG) emissions. This paper presents the climate-smart village (CSV) approach as a means of performing agricultural research for development that robustly tests technological and institutional options for dealing with climatic variability and climate change in agriculture using participatory methods. It …
The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg
The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg
College of Agriculture and Life Sciences Faculty Publications
Humans have domesticated hundreds of plant and animal species as sources of food, fiber, forage, and tools over the past 12,000 years, with manifold effects on both human society and the genetic structure of the domesticated species. The outcomes of crop domestication were shaped by selection driven by human preferences, cultivation practices, and agricultural environments, as well as other population genetic processes flowing from the ensuing reduction in effective population size. It is obvious that any selection imposes a reduction of diversity, favoring preferred genotypes, such as nonshattering seeds or increased palatability. Furthermore, agricultural practices greatly reduced effective population sizes …
Evaluating Spatial Variability In Sediment And Phosphorus Concentration-Discharge Relationships Using Bayesian Inference And Self-Organizing Maps, Kristen L. Underwood, Donna M. Rizzo, Andrew W. Schroth, Mandar M. Dewoolkar
Evaluating Spatial Variability In Sediment And Phosphorus Concentration-Discharge Relationships Using Bayesian Inference And Self-Organizing Maps, Kristen L. Underwood, Donna M. Rizzo, Andrew W. Schroth, Mandar M. Dewoolkar
College of Engineering and Mathematical Sciences Faculty Publications
Given the variable biogeochemical, physical, and hydrological processes driving fluvial sediment and nutrient export, the water science and management communities need data-driven methods to identify regions prone to production and transport under variable hydrometeorological conditions. We use Bayesian analysis to segment concentration-discharge linear regression models for total suspended solids (TSS) and particulate and dissolved phosphorus (PP, DP) using 22 years of monitoring data from 18 Lake Champlain watersheds. Bayesian inference was leveraged to estimate segmented regression model parameters and identify threshold position. The identified threshold positions demonstrated a considerable range below and above the median discharge—which has been used previously …
Reducing Greenhouse Gas Emissions In Agriculture Without Compromising Food Security?, Stefan Frank, Petr Havlík, Jean François Soussana, Antoine Levesque, Hugo Valin, Eva Wollenberg, Ulrich Kleinwechter, Oliver Fricko, Mykola Gusti, Mario Herrero, Pete Smith, Tomoko Hasegawa, Florian Kraxner, Michael Obersteiner
Reducing Greenhouse Gas Emissions In Agriculture Without Compromising Food Security?, Stefan Frank, Petr Havlík, Jean François Soussana, Antoine Levesque, Hugo Valin, Eva Wollenberg, Ulrich Kleinwechter, Oliver Fricko, Mykola Gusti, Mario Herrero, Pete Smith, Tomoko Hasegawa, Florian Kraxner, Michael Obersteiner
Rubenstein School of Environment and Natural Resources Faculty Publications
To keep global warming possibly below 1.5◦C and mitigate adverse effects of climate change, agriculture, like all other sectors, will have to contribute to efforts in achieving net negative emissions by the end of the century. Cost-efficient distribution of mitigation across regions and economic sectors is typically calculated using a global uniform carbon price in climate stabilization scenarios. However, in reality such a carbon price would substantially affect food availability. Here, we assess the implications of climate change mitigation in the land use sector for agricultural production and food security using an integrated partial equilibrium modelling framework and explore ways …
Integrating Agroecology And Participatory Action Research (Par): Lessons From Central America, V. Ernesto Méndez, Martha Caswell, Stephen R. Gliessman, Roseann Cohen
Integrating Agroecology And Participatory Action Research (Par): Lessons From Central America, V. Ernesto Méndez, Martha Caswell, Stephen R. Gliessman, Roseann Cohen
College of Agriculture and Life Sciences Faculty Publications
The last decade has seen an increasing advancement and interest in the integration of agroecology and participatory action research (PAR). This article aims to: (1) analyze the key characteristics and principles of two case studies that integrated PAR and agroecology in Central America; and (2) learn from the lessons offered by these case studies, as well as others from the literature, on how to better integrate PAR and agroecology. Key principles identified for effective PAR agroecological processes include a shared interest in research by partners, a belief in collective power/action, a commitment to participation, practicing humility and establishing trust and …
Harnessing Local Strength For Sustainable Coffee Value Chains In India And Nicaragua: Reevaluating Certification To Global Sustainability Standards, Dagmar Mithöfer, V. Ernesto Méndez, Arshiya Bose, Philippe Vaast
Harnessing Local Strength For Sustainable Coffee Value Chains In India And Nicaragua: Reevaluating Certification To Global Sustainability Standards, Dagmar Mithöfer, V. Ernesto Méndez, Arshiya Bose, Philippe Vaast
College of Agriculture and Life Sciences Faculty Publications
Coffee is generally grown in areas derived from forest, and both its expansion and management cause biodiversity loss. Sustainability standards in coffee are well established but have been criticized while social and environmental impact is elusive. This paper assesses the issue-attention cycle of coffee production in India and Nicaragua, including producer concerns and responses over time to concerns (sustainability standards, public regulations and development projects). Systematic comparison of the socioeconomic, environmental and policy context in both countries is then used to explore potential effects of sustainability standards. Results show limits, in local context, to relevance of global certification approaches: in …
Coupled Impacts Of Climate And Land Use Change Across A River-Lake Continuum: Insights From An Integrated Assessment Model Of Lake Champlain's Missisquoi Basin, 2000-2040, Asim Zia, Arne Bomblies, Andrew W. Schroth, Christopher Koliba, Peter D.F. Isles, Yushiou Tsai, Ibrahim N. Mohammed, Gabriela Bucini, Patrick J. Clemins, Scott Turnbull, Morgan Rodgers, Ahmed Hamed, Brian Beckage, Jonathan Winter
Coupled Impacts Of Climate And Land Use Change Across A River-Lake Continuum: Insights From An Integrated Assessment Model Of Lake Champlain's Missisquoi Basin, 2000-2040, Asim Zia, Arne Bomblies, Andrew W. Schroth, Christopher Koliba, Peter D.F. Isles, Yushiou Tsai, Ibrahim N. Mohammed, Gabriela Bucini, Patrick J. Clemins, Scott Turnbull, Morgan Rodgers, Ahmed Hamed, Brian Beckage, Jonathan Winter
College of Engineering and Mathematical Sciences Faculty Publications
Global climate change (GCC) is projected to bring higher-intensity precipitation and higher-variability temperature regimes to the Northeastern United States. The interactive effects of GCC with anthropogenic land use and land cover changes (LULCCs) are unknown for watershed level hydrological dynamics and nutrient fluxes to freshwater lakes. Increased nutrient fluxes can promote harmful algal blooms, also exacerbated by warmer water temperatures due to GCC. To address the complex interactions of climate, land and humans, we developed a cascading integrated assessment model to test the impacts of GCC and LULCC on the hydrological regime, water temperature, water quality, bloom duration and severity …
Multiple Post-Domestication Origins Of Kabuli Chickpea Through Allelic Variation In A Diversification-Associated Transcription Factor, R. Varma Penmetsa, Noelia Carrasquilla-Garcia, Emily M. Bergmann, Lisa Vance, Brenna Castro, Mulualem T. Kassa, Birinchi K. Sarma, Subhojit Datta, Andrew D. Farmer, Jong Min Baek, Clarice J. Coyne, Rajeev K. Varshney, Eric J.B. Von Wettberg, Douglas R. Cook
Multiple Post-Domestication Origins Of Kabuli Chickpea Through Allelic Variation In A Diversification-Associated Transcription Factor, R. Varma Penmetsa, Noelia Carrasquilla-Garcia, Emily M. Bergmann, Lisa Vance, Brenna Castro, Mulualem T. Kassa, Birinchi K. Sarma, Subhojit Datta, Andrew D. Farmer, Jong Min Baek, Clarice J. Coyne, Rajeev K. Varshney, Eric J.B. Von Wettberg, Douglas R. Cook
College of Agriculture and Life Sciences Faculty Publications
Chickpea (Cicer arietinum) is among the founder crops domesticated in the Fertile Crescent. One of two major forms of chickpea, the so-called kabuli type, has white flowers and light-colored seed coats, properties not known to exist in the wild progenitor. The origin of the kabuli form has been enigmatic. We genotyped a collection of wild and cultivated chickpea genotypes with 538 single nucleotide polymorphisms (SNPs) and examined patterns of molecular diversity relative to geographical sources and market types. In addition, we examined sequence and expression variation in candidate anthocyanin biosynthetic pathway genes. A reduction in genetic diversity and extensive genetic …
Conjoint Analysis Of Farmers' Response To Conservation Incentives, David Conner, Jennifer Miller, Asim Zia, Qingbin Wang, Heather Darby
Conjoint Analysis Of Farmers' Response To Conservation Incentives, David Conner, Jennifer Miller, Asim Zia, Qingbin Wang, Heather Darby
College of Agriculture and Life Sciences Faculty Publications
Environmental degradation threatens the long term resiliency of the US food and farming system. While USDA has provided conservation incentives for the adoption of best management practices (BMPs), only a small percentage of farms have participated in such conservation programs. This study uses conjoint analysis to examine Vermont farmers' underlying preferences and willingness-to-accept (WTA) incentives for three common BMPs. Based on the results of this survey, we hypothesize that federal cost share programs' payments are below preferred incentive levels and that less familiar and more complex BMPs require a higher payment. Our implications focus on strategies to test these hypotheses …
Farmer Perceptions Of Climate Change: Associations With Observed Temperature And Precipitation Trends, Irrigation, And Climate Beliefs, Meredith T. Niles, Nathaniel D. Mueller
Farmer Perceptions Of Climate Change: Associations With Observed Temperature And Precipitation Trends, Irrigation, And Climate Beliefs, Meredith T. Niles, Nathaniel D. Mueller
College of Agriculture and Life Sciences Faculty Publications
How individuals perceive climate change is linked to whether individuals support climate policies and whether they alter their own climate-related behaviors, yet climate perceptions may be influenced by many factors beyond local shifts in weather. Infrastructure designed to control or regulate natural resources may serve as an important lens through which people experience climate, and thus may influence perceptions. Likewise, perceptions may be influenced by personal beliefs about climate change and whether it is human-induced. Here we examine farmer perceptions of historical climate change, how perceptions are related to observed trends in regional climate, how perceptions are related to the …
The Moral Basis For Conservation - Reflections On Dickman Et Al., Douglas Sheil, Jane Cohen, Carol J.Pierce Colfer, David Price, Rajindra Puri, Manuel Ruiz-Perez, Yulia Sugandi, Paul Vedeld, Eva Wollenberg, Yurdi Yasmi
The Moral Basis For Conservation - Reflections On Dickman Et Al., Douglas Sheil, Jane Cohen, Carol J.Pierce Colfer, David Price, Rajindra Puri, Manuel Ruiz-Perez, Yulia Sugandi, Paul Vedeld, Eva Wollenberg, Yurdi Yasmi
Rubenstein School of Environment and Natural Resources Faculty Publications
No abstract provided.
Farmer Perceptions Of Climate Change Risk And Associated On-Farm Management Strategies In Vermont, Northeastern United States, Rachel E. Schattman, David Conner, V. Ernesto Méndez
Farmer Perceptions Of Climate Change Risk And Associated On-Farm Management Strategies In Vermont, Northeastern United States, Rachel E. Schattman, David Conner, V. Ernesto Méndez
College of Agriculture and Life Sciences Faculty Publications
Little research has been conducted on how agricultural producers in the northeastern United States conceptualize climate-related risk and how these farmers address risk through on-farm management strategies. Two years following Tropical Storm Irene, our team interviewed 15 farmers in order to investigate their perceptions of climate-related risk and how their decision-making was influenced by these perceptions. Our results show that Vermont farmers are concerned with both ecological and economic risk. Subthemes that emerged included geographic, topographic, and hydrological characteristics of farm sites; stability of land tenure; hydrological erosion; pest and disease pressure; market access; household financial stability; and floods. Farmers …
Exploring Germplasm Diversity To Understand The Domestication Process In Cicer Spp. Using Snp And Dart Markers, Manish Roorkiwal, Eric J. Von Wettberg, Hari D. Upadhyaya, Emily Warschefsky, Abhishek Rathore, Rajeev K. Varshney
Exploring Germplasm Diversity To Understand The Domestication Process In Cicer Spp. Using Snp And Dart Markers, Manish Roorkiwal, Eric J. Von Wettberg, Hari D. Upadhyaya, Emily Warschefsky, Abhishek Rathore, Rajeev K. Varshney
College of Agriculture and Life Sciences Faculty Publications
To estimate genetic diversity within and between 10 interfertile Cicer species (94 genotypes) from the primary, secondary and tertiary gene pool, we analysed 5,257 DArT markers and 651 KASPar SNP markers. Based on successful allele calling in the tertiary gene pool, 2,763 DArT and 624 SNP markers that are polymorphic between genotypes from the gene pools were analyzed further. STRUCTURE analyses were consistent with 3 cultivated populations, representing kabuli, desi and pea-shaped seed types, with substantial admixture among these groups, while two wild populations were observed using DArT markers. AMOVA was used to partition variance among hierarchical sets of landraces …
Shade Coffee: Update On A Disappearing Refuge For Biodiversity, Shalene Jha, Christopher M. Bacon, Stacy M. Philpott, V. Ernesto Méndez, Peter Läderach, Robert A. Rice
Shade Coffee: Update On A Disappearing Refuge For Biodiversity, Shalene Jha, Christopher M. Bacon, Stacy M. Philpott, V. Ernesto Méndez, Peter Läderach, Robert A. Rice
College of Agriculture and Life Sciences Faculty Publications
In the past three decades, coffee cultivation has gained widespread attention for its crucial role in supporting local and global biodiversity. In this synthetic Overview, we present newly gathered data that summarize how global patterns in coffee distribution and shade vegetation have changed and discuss implications for biodiversity, ecosystem services, and livelihoods. Although overall cultivated coffee area has decreased by 8% since 1990, coffee production and agricultural intensification have increased in many places and shifted globally, with production expanding in Asia while contracting in Africa. Ecosystem services such as pollination, pest control, climate regulation, and nutrient sequestration are generally greater …
Food Sovereignty: An Alternative Paradigm For Poverty Reduction And Biodiversity Conservation In Latin America, M. Jahi Chappell, Hannah Wittman, Christopher M. Bacon, Bruce G. Ferguson, Luis García Barrios, Raúl García Barrios, Daniel Jaffee, Jefferson Lima, V. Ernesto Méndez, Helda Morales, Lorena Soto-Pinto, John Vandermeer, Ivette Perfecto
Food Sovereignty: An Alternative Paradigm For Poverty Reduction And Biodiversity Conservation In Latin America, M. Jahi Chappell, Hannah Wittman, Christopher M. Bacon, Bruce G. Ferguson, Luis García Barrios, Raúl García Barrios, Daniel Jaffee, Jefferson Lima, V. Ernesto Méndez, Helda Morales, Lorena Soto-Pinto, John Vandermeer, Ivette Perfecto
College of Agriculture and Life Sciences Faculty Publications
Strong feedback between global biodiversity loss and persistent, extreme rural poverty are major challenges in the face of concurrent food, energy, and environmental crises. This paper examines the role of industrial agricultural intensification and market integration as exogenous socio-ecological drivers of biodiversity loss and poverty traps in Latin America. We then analyze the potential of a food sovereignty framework, based on protecting the viability of a diverse agroecological matrix while supporting rural livelihoods and global food production. We review several successful examples of this approach, including ecological land reform in Brazil, agroforestry, milpa, and the uses of wild varieties in …
Beyond Climate-Smart Agriculture: Toward Safe Operating Spaces For Global Food Systems, Henry Neufeldt, Molly Jahn, Bruce M. Campbell, John R. Beddington, Fabrice Declerck, Alessandro De Pinto, Jay Gulledge, Jonathan Hellin, Mario Herrero, Andy Jarvis, David Lezaks, Holger Meinke, Todd Rosenstock, Mary Scholes, Robert Scholes, Sonja Vermeulen, Eva Wollenberg, Robert Zougmoré
Beyond Climate-Smart Agriculture: Toward Safe Operating Spaces For Global Food Systems, Henry Neufeldt, Molly Jahn, Bruce M. Campbell, John R. Beddington, Fabrice Declerck, Alessandro De Pinto, Jay Gulledge, Jonathan Hellin, Mario Herrero, Andy Jarvis, David Lezaks, Holger Meinke, Todd Rosenstock, Mary Scholes, Robert Scholes, Sonja Vermeulen, Eva Wollenberg, Robert Zougmoré
Rubenstein School of Environment and Natural Resources Faculty Publications
Agriculture is considered to be "climate-smart" when it contributes to increasing food security, adaptation and mitigation in a sustainable way. This new concept now dominates current discussions in agricultural development because of its capacity to unite the agendas of the agriculture, development and climate change communities under one brand. In this opinion piece authored by scientists from a variety of international agricultural and climate research communities, we argue that the concept needs to be evaluated critically because the relationship between the three dimensions is poorly understood, such that practically any improved agricultural practice can be considered climate-smart. This lack of …
Restoring Native Forest Understory: The Influence Of Ferns And Light In A Hawaiian Experiment, Rachelle K. Gould, Harold Mooney, Laura Nelson, Robert Shallenberger, Gretchen C. Daily
Restoring Native Forest Understory: The Influence Of Ferns And Light In A Hawaiian Experiment, Rachelle K. Gould, Harold Mooney, Laura Nelson, Robert Shallenberger, Gretchen C. Daily
Rubenstein School of Environment and Natural Resources Faculty Publications
Ecological restoration is an increasingly important component of sustainable land management. We explore potential facilitative relationships for enhancing the cost-effectiveness of restoring native forest understory, focusing on two factors: (1) overstory shade and (2) possible facilitation by a fern (Dryopteris wallichiana), one of few native colonists of pasture in our montane Hawai'i study system. We planted 720 understory tree seedlings and over 4000 seeds of six species under six planting treatments: a full factorial combination of low, medium and high light, situating plantings in either the presence or absence of a mature fern. After three years, 75% of outplanted seedlings …