Plant Sciences Commons^™

Do Coffee Agroforestry Systems Always Improve Soil Carbon Stocks Deeper In The Soil?—A Case Study From Turrialba, Costa Rica, Nilovna Chatterjee, P. K. Ramachandran Nair, Vimala D. Nair, Abhishek Bhattacharjee, Elias De Melo Virginio Filho, Rheinhold G. Muschler, Martin R.A. Noponen

Department of Agronomy and Horticulture: Faculty Publications

Shaded perennial agroforestry systems (AFS) are regarded as desirable land‐use practices that improve soil carbon sequestration. However, most studies assume a positive correlation between above ground and below ground carbon without considering the effect of past and current land management, textural variations (silt and clay percentage), and such other site‐specific factors that have a major influence on the extent of soil C sequestration. We assessed SOC stock at various depths (0–10, 10–30, 30–60, and 60–100 cm) in shaded perennial coffee (Coffea arabica L.) AFS in a 17‐ year‐old experimental field at the Centro Agronómico Tropical de Investigación y Enseñanza, (9°53′44′′ …

Remediating Soil For Successful Vegetation Establishment Along Nebraska Highways, Shad Mills, Martha Mamo, Walt Schacht, Humberto Blanco-Canqui

Nebraska Department of Transportation: Research Reports

Vegetation along roadsides is important to prevent soil erosion, provide habitat, and filter water running off the road. Vegetation close to the pavement along highways in Nebraska does not readily establish and persist. It is thought that the sodium and bulk density are the driving factors behind the lack of vegetation. After a construction project the shoulder is seeded into the compacted soil, and during winter salts can accumulate in the soil because of deicing agents being used. The purpose of our study was to determine if the sodium and bulk density are the driving factors of the vegetation cover. …

Establishment Of Wildflower Islands To Enhance Roadside Health And Aesthetics, Walter Schacht, Judy Wu-Smart

Nebraska Department of Transportation: Research Reports

Wildflowers are crucial in the ecological function of the low-input roadside plant communities in terms of water andnutrient cycling, nutrient inputs such as nitrogen, total plant canopy cover, stand longevity, and provision of habitat for numerous small animals. Further, wildflowers provide critical foraging and nesting resources for birds, insects, and other wildlife. Unfortunately, habitat loss from agricultural and urban development has led to rapid population declines in wild bees and other pollinators across the US, thereby jeopardizing not only food production but also the sustainability of our natural landscapes (Kearns & Inouye, 1997). One way to mitigate wild bee decline …

Pi‑Plat: A High‑Resolution Image‑Based 3d Reconstruction Method To Estimate Growth Dynamics Of Rice Inflorescence Traits, Jaspreet Sandhu, Feiyu Zhu, Puneet Paul, Tian Gao, Balpreet K. Dhatt, Yufeng Ge, Paul E. Staswick, Hongfeng Yu, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Background: Recent advances in image-based plant phenotyping have improved our capability to study vegetative stage growth dynamics. However, more complex agronomic traits such as inflorescence architecture (IA), which predominantly contributes to grain crop yield are more challenging to quantify and hence are relatively less explored. Previous efforts to estimate inflorescence-related traits using image-based phenotyping have been limited to destructive end-point measurements. Development of non-destructive inflorescence phenotyping platforms could accelerate the discovery of the phenotypic variation with respect to inflorescence dynamics and mapping of the underlying genes regulating critical yield components.

Results: The major objective of this study is to evaluate …

Divergent Phenotypic Response Of Rice Accessions To Transient Heat Stress During Early Seed Development, Puneet Paul, Balpreet K. Dhatt, Jaspreet Sandhu, Waseem Hussain, Larissa Irvin, Gota Morota, Paul E. Staswick, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Increasing global surface temperatures is posing a major food security challenge. Part of the solution to address this problem is to improve crop heat resilience, especially during grain development, along with agronomic decisions such as shift in planting time and increasing crop diversification. Rice is a major food crop consumed by more than 3 billion people. For rice, thermal sensitivity of reproductive development and grain filling is well-documented, while knowledge concerning the impact of heat stress (HS) on early seed development is limited. Here, we aim to study the phenotypic variation in a set of diverse rice accessions for elucidating …

Deep Kernel And Deep Learning For Genome-Based Prediction Of Single Traits In Multienvironment Breeding Trials, José Crossa, Johannes W.R. Martini, Daniel Gianola, Paulino Pérez-Rodríguez, Diego Jarquin, Philomin Juliana, Osval Antonio Montesinos López, Jaime Cuevas

Department of Agronomy and Horticulture: Faculty Publications

Deep learning (DL) is a promising method for genomic-enabled prediction. However, the implementation of DL is difficult because many hyperparameters (number of hidden layers, number of neurons, learning rate, number of epochs, batch size, etc.) need to be tuned. For this reason, deep kernel methods, which only require defining the number of layers, may be an attractive alternative. Deep kernel methods emulate DL models with a large number of neurons, but are defined by relatively easily computed covariance matrices. In this research, we compared the genome-based prediction of DL to a deep kernel (arc-cosine kernel, AK), to the commonly used …

Plant Hormones Differentially Control The Sub-Cellular Localization Of Plasma Membrane Microdomains During The Early Stage Of Soybean Nodulation, Zhenzhen Qiao, Prince Zogli, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Phytohormones regulate the mutualistic symbiotic interaction between legumes and rhizobia, nitrogen-fixing soil bacteria, notably by controlling the formation of the infection thread in the root hair (RH). At the cellular level, the formation of the infection thread is promoted by the translocation of plasma membrane microdomains at the tip of the RH. We hypothesize that phytohormones regulate the translocation of plasma membrane microdomains to regulate infection thread formation. Accordingly, we treated with hormone and hormone inhibitors transgenic soybean roots expressing fusions between the Green Fluorescent Protein (GFP) and GmFWL1 or GmFLOT2/4, two microdomain-associated proteins translocated at the tip of the …

Critical Time For Weed Removal In Corn (Zea Mays L.) As Influenced By Pre Herbicides, Ayse Nur Ulusoy

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

A weed control program that utilizes PRE herbicides and ensures a timely post-emergence weed removal could protect growth and yield of corn. The use of pre-emergence (PRE) herbicides for weed control could reduce the need for multiple POST applications of glyphosate in glyphosate-tolerant (GT) corn and provide an additional mode of action for combating glyphosate-resistant weeds. Thus, field studies were conducted in 2017 and 2018 at Concord, NE with the following objectives develop weed management recommendations that considers soil applied herbicides and determine proper timing of glyphosate based on the crop growth stage.

Therefore the material in this thesis is …

Effects Of Different Water And Nitrogen Regimens On Yield Of Winter Wheat Produced In Nebraska, Joseph Emory Davis

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Wheat is the 3rd most prominent crop in the USA and approximately 50% is exported annually. Nebraska wheat production is 11^th in the country, and it plays a major role in the state's agricultural economy, especially in western NE. Generally, wheat is grown under dryland conditions and the region grows much more wheat on unirrigated land than it does on irrigated. However, deficit irrigation has shown great value in producing high yielding wheat with much less water than needed for other crops. Finding new ways to leverage irrigation in wheat production may help address the need to produce food …

Integration Of Cover Crops Into Midwest Corn-Soybean Cropping Systems And Potential For Weed Suppression, Joshua S. Wehrbein

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Cover crops have potential to provide benefits to agricultural systems, such as improved soil productivity, nutrient scavenging, weed suppression, and livestock forage. There are several challenges associated with cover crop integration into traditional Midwest corn-soybean cropping systems. One of these challenges is timely establishment in the fall, which is limited by the relatively late harvest of corn and soybean. Cover crop effectiveness is related to the amount of biomass produced, thus maximizing the growth period in the fall is desired. To address this challenge, we evaluated the potential to utilize early-season soybean maturity groups (MGs) to allow for earlier soybean …

Use Of Uav Imagery And Nutrient Analyses For Estimation Of The Spatial And Temporal Contributions Of Cattle Dung To Nutrient Cycling In Grazed Ecosystems, Amanda Shine

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Nutrient inputs from cattle dung are crucial drivers of nutrient cycling processes in grazed ecosystems. These inputs are important both spatially and temporally and are affected by variables such as grazing strategy, water location, and the nutritional profile of forage being grazed. Past research has attempted to map dung deposition patterns in order to more accurately estimate nutrient input, but the large spatial extent of a typical pasture and the tedious nature of identifying and mapping individual dung pats has prohibited the development of a time- and cost-effective methodology. The first objective of this research was to develop and validate …

Understanding Nitrogen Limitation In Soybean, Nicolas Cafaro La Menza

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Meeting soybean demand on existing cropland area for a global population of 9.7 billion people by the year 2050 requires narrowing the existing gap between average producer yield and yield potential. Soybean relies on two sources on nitrogen (N): biological N2 fixation and indigenous soil N supply. As soybean yield continues to increase, it seems critical to know if there is a yield level at which potential contribution of indigenous nitrogen sources and fixation becomes insufficient to meet crop N requirements for high yields, while still maintaining or increasing protein and oil concentration. This study evaluated N limitation across 29 …

Arkansas Soybean Research Studies 2018, Jeremy Ross

Arkansas Agricultural Experiment Station Research Series

Arkansas is the leading soybean-producing state in the mid-southern United States. Arkansas ranked 11th in soybean production in 2018 when compared to the other soybean-producing states in the U.S. The state represents 3.7% of the total U.S. soybean production and 3.7% of the total acres planted in soybean in 2018. The 2018 state soybean average was 50.5 bushels per acre, half a bushel lower than the state record set in 2017. The top five soybean-producing counties in 2018 were Mississippi, Desha, Phillips, Arkansas, and Poinsett Counties (Table 1). These five counties accounted for 33.7% of soybean production in Arkansas in …

Arkansas Soybean Performance Tests 2019, J. F. Carlin, R. D. Bond, J. A. Still

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/or marketing seed within the State, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.

A Survey Of Soil Properties Affecting Vegetation Establishment Along Nebraska Highways, Shad D. Mills

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Vegetation along roadsides is important to prevent soil erosion, provide habitat and filter water running off the road. Along some highways in Nebraska vegetation does not readily establish and persist. It is thought that sodium and bulk density issues are the driving factor behind the lack of vegetation. After a construction project, the shoulder is seeded into the compacted soil, and salts can accumulate in the soil due to deicing agents being used during the winter. The purpose of our study was to determine if the bulk density and sodium are the driving factors of the vegetation cover. We also …

Benchmarking On-Farm Maize Nitrogen Balance In The Western U.S. Corn Belt, Fatima Amor Tenorio

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

A nitrogen (N) balance, calculated as the difference between N inputs and grain-N removal, provides an estimate of the potential N losses. We used N balance with other N-related metrics (partial factor productivity for N inputs, and yield-scaled N balance), to benchmark maize yields in relation with N input use in the US Corn Belt. We first used experimental data on grain-N concentration (GNC) to assess variation in this parameter due to biophysical and management factors. Subsequently, we used N balance and N-related metrics to benchmark yields in relation with N inputs in irrigated and rainfed fields in Nebraska using …

Evaluation Of A Global Spring Wheat Panel For Stripe Rust: Resistance Loci Validation And Novel Resources Identification, Ibrahim Elbasyoni, Walid M. El-Orabey, Sabah Morsy, P. S. Baenziger, Zakaria Al Ajlouni4, Ismail M. Dweikat

Department of Agronomy and Horticulture: Faculty Publications

Stripe rust (incited by Puccinia striiformis f. sp. tritici) is airborne wheat (Triticum aestivum L.) disease with dynamic virulence evolution. Thus, anticipatory and continued screening in hotspot regions is crucial to identify new pathotypes and integrate new resistance resources to prevent potential disease epidemics. A global wheat panel consisting of 882 landraces and 912 improved accessions was evaluated in two locations in Egypt during 2016 and 2017. Five prevalent and aggressive pathotypes of stripe rust were used to inoculate the accessions during the two growing seasons and two locations under field conditions. The objectives were to evaluate the panel for …

Influence Of Vermicompost Tea On Secondary Metabolites In Solanum Lycopersicum Within South Florida, Daphne K. Sugino Souffront

FIU Electronic Theses and Dissertations

Fresh Market Tomatoes provide a high revenue stream for Florida’s agricultural sector. To attain profitable yields, farmers introduce high inputs of pesticides to suppress pest invasion/damage. Heavy usage of pesticides has adverse effects on human and environmental health. A possible solution might be the incorporation of vermicompost in pest management. Typically used as a fertilizer, vermicompost has pest suppressant properties. Mechanisms influencing enhanced pest resistance are unknown. To identify such mechanisms, a study was conducted to evaluate physical and chemical changes of the BHN589 tomato plant following the addition of varying vermicompost tea treatments (T5%, T10%, and T20%) . Results …

Metabolic Dynamics Of Developing Rice Seeds Under High Night-Time Temperature Stress, Balpreet K. Dhatt, Nathan Abshire, Puneet Paul, Kalani Hasanthika, Jaspreet Sandhu, Qi Zhang, Toshihiro Obata, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

High temperature stress during rice reproductive development results in yield losses. Reduced grain yield and grain quality has been associated with high temperature stress, and specifically with high night-time temperatures (HNT). Characterizing the impact of HNT on the phenotypic and metabolic status of developing rice seeds can provide insights into the mechanisms involved in yield and quality decline. Here, we examined the impact of warmer nights on the morphology and metabolome during early seed development in six diverse rice accessions. Seed size was sensitive to HNT in four of the six genotypes, while seed fertility and seed weight were unaffected. …

Ghd8 Controls Rice Photoperiod Sensitivity By Forming A Complex That Interacts With Ghd7, Peng Wang, Rong Gong, Ying Yang, Sibin Yu

Department of Agronomy and Horticulture: Faculty Publications

Background: Flowering time is one of the most important agronomic characteristics that ultimately determine yield potential and eco-geographical adaptation in crops. Ghd8 and Ghd7, two major flowering genes, have similar functions and large pleiotropic effects in controlling the heading date, plant height and grain yield of rice. However, these gene interactions at the genetic and molecular levels have not been determined to date.

Results: In this study, we investigated the genetic interaction between Ghd8 and Ghd7 by using a set of near-isogenic lines and a panel of natural germplasm accessions in rice. We found that Ghd8 affected multiple agronomic traits …

Legacy Effects Of Biodegradable Mulch And Soil Amendments On Vegetable Crops And The Soil, Elise V.H. Reid

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Plastic film mulches are used in horticulture to manage weeds, improve water retention, and increase soil temperature. Bioplastics and biofabrics are potentially sustainable alternatives to plastic film; however, they have different rates of in soil degradation. Polylactic acid (PLA) is a 100% biobased polymer that degrades slowly, but could fulfill organic certification to be soil incorporated. Mater-Bi is a commercially available biodegradable plastic (bioplastic), which degrades quickly, but cannot be incorporated in organic systems. Our objectives were to determine the individual and combined effects of soil amendments and residual mulch on vegetable crop yield and soil fertility. In a two-year …

Organic Agriculture Teaching And Learning In 2025: Transforming The Future Learning Landscape, Randa Jabbour, Charles A. Francis, Mary Barbercheck, Katharina S. Ullman

Department of Agronomy and Horticulture: Faculty Publications

University instructors are compelled to anticipate future changes in farming and food systems that will impact their students. Sixteen educators met in 2018 to envision the future of organic agriculture courses needed by 2025. Likely future global issues include food access, especially for people of limited economic means; climate change; and fossil fuel costs. Changes that will impact education are increasing demand for quality food, more organic production, and globalization of food systems due to consolidation. Probable course content changes are increasing focus on whole farm systems; designing for resilience in changing physical, economic, environmental, and political climates; and increasing …

Canavalia And Dolichos Extracts For Sustainable Pest Biocontrol And Plant Nutrition Improvement In El Salvador, Carlos Martinez

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Botanical repellents and pesticides are now being rediscovered as new tools for integrated pest management in order to reduce the use of toxic chemicals in crop production. Canavalia gladiata and Dolichos lablab are two Fabaceae very well adapted to farmlands of El Salvador, effective as living barriers and mostly as cover crops, however, they are not yet very well disseminated. This document describes the potential for using the liquid extracts and the dry flour of raw seeds of those plants for economic benefit and practical convenience for pest management in Salvadorian agriculture under field conditions. Seed extracts were useful when …

Application Of Autofluorescence For Confocal Microscopy To Aid In Archaeoparasitological Analyses, Johnica Jo Morrow, Christian Elowsky

Department of Agronomy and Horticulture: Faculty Publications

Confocal laser scanning microscopy (CLSM) was used to examine archaeoparasitological specimens from coprolites associated with La Cueva de los Muertos Chiquitos (CMC) located near present-day Durango, Mexico. The eggs for 4 different types of parasites recovered from CMC coprolites were imaged using CLSM to assist with identification efforts. While some of the parasite eggs recovered from CMC coprolites were readily identified using standard light microscopy (LM), CLSM provided useful data for more challenging identifications by highlighting subtle morphological features and enhancing visualization of parasite egg anatomy. While other advanced microscopy techniques, such as scanning electron microscopy (SEM), may also detect …

Arkansas Corn And Grain Sorghum Performance Tests 2019, J. F. Carlin, R. D. Bond, J. A. Still

Arkansas Agricultural Experiment Station Research Series

Corn and grain sorghum performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture. The tests provide information to companies marketing seed within the state and aid the Arkansas Cooperative Extension Service in formulating recommendations for producers. The 2019 corn performance tests contained 74 hybrids and were conducted at the Northeast Research and Extension Center (NEREC) at Keiser, the Lon Mann Cotton Research Station (LMCRS) near Marianna, the Bell Farming Company near Des Arc, the Rohwer Research Station (RRS) near Rohwer and the Rice Research and Extension Center (RREC) near Stuttgart. The 2019 …

Grains, Seeds And Hay Industry Funding Scheme Annual Report 2018/2019, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

The Grains, Seeds and Hay Industry Funding Scheme (IFS) has been operating since 2010 to address biosecurity threats relevant to Western Australia’s (WA) grains, seeds and hay industry. The Scheme was established under the Biosecurity and Agriculture Management Act 2007 to enable growers to identify the pest and disease priorities at a whole-of-industry level and raise funds for activities to address these priorities.

There are currently three Industry Funding Schemes in operation. In addition to the Grains, Seeds and Hay IFS, there is a Cattle IFS and a Sheep and Goat IFS. The three IFSs operate in a similar manner. …

Challenges And Opportunities For Weed Control In Nebraska Popcorn, Ethann R. Barnes

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Weed control in popcorn is challenging with limited herbicide options and popcorn’s perceived sensitivity to herbicides. Understanding the impact of weeds maximizes yield and profit. New herbicide-resistant crops increase chances of drift or misapplication into popcorn, which doesn’t have herbicide-resistant traits. Herbicides that are labeled in popcorn are often only conditionally labeled with reduce rates, warnings, or limited popcorn types. Dent-sterility in popcorn is contingent on the Ga1 gene (Ga1-s), but this system is at risk from Ga1-m field corn introduced from Mexico because it overcomes dent-sterility. This risk is under-assessed as Ga1-m carriers are undocumented and Mexican germplasm usage …

Arkansas Wheat Cultivar Performance Tests 2018-2019, R. E. Mason, R. G. Miller, D. E. Moon, J. P. Kelley

Arkansas Agricultural Experiment Station Research Series

Wheat cultivar performance tests are conducted each year in Ark- ansas by the University of Arkansas System Division of Agriculture’s Arkansas Agricultural Experiment Station, Department of Crop, Soil and Environmental Sciences. The tests provide information to companies developing cultivars and marketing seed within the state and aid the Arkansas Cooperative Extension Service in formulating cultivar recommendations for small-grain producers. The tests are conducted at the Northeast Research and Extension Center at Keiser, the Vegetable Substation near Kibler, the Lon Mann Cotton Research Station near Marianna, the Newport Extension Center near Newport, the Rohwer Research Station near Rohwer, the Pine Tree …

Measuring Bird Damage To Three Fruit Crops: A Comparison Of Grower And Field Estimates, Julie L. Elser, Catherine A. Lindell, Karen M. M. Steensma, Paul D. Curtis, Deanna K. Leigh, William F. Siemer, Jason Boulanger, Stephanie A. Shwiff

Biology Faculty Publications

Birds are common pests in fruit orchards. They frequently consume and damage fruit resulting in decreased yields for growers. The true extent of damage is difficult to measure. Producer surveys are often implemented to estimate damage, but the accuracy of these estimates is uncertain. We compared damage estimates obtained through field studies with estimates from a producer survey for three fruit crops: wine grapes, sweet cherries, and ‘Honeycrisp’ apples. We also analyzed relationships between use of various damage management methods and levels of bird damage. We found wine grape and sweet cherry growers accurately assessed bird damage, while ‘Honeycrisp’ apple …

United States Midwest Soil And Weather Conditions Influence Anaerobic Potentially Mineralizable Nitrogen, Jason D. Clark, Kristen S. Veum, Fabian G. Fernandez, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, Carrie A.M. Laboski, Emerson D. Nafziger, John E. Sawyer, John F. Shanahan

Agronomy, Horticulture and Plant Science Faculty Publications

Nitrogen provided to crops through mineralization is an important factor in N management guidelines. Understanding of the interactive effects of soil and weather conditions on N mineralization needs to be improved. Relationships between anaerobic potentially mineralizable N (PMN_an) and soil and weather conditions were evaluated under the contrasting climates of eight US Midwestern states. Soil was sampled (0–30 cm) for PMN_an analysis before pre-plant N application (PP_0N) and at the V5 development stage from the pre-plant 0 (V5_0N) and 180 kg N ha⁻¹ (V5_180N) rates and incubated for 7, 14, …