Marine Biology Commons^™

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

The Global Effects Of Climate Change: Detrimental Impacts On The Environment, Ecosystem, Coral Reefs, Human Health/Well-Being, And Global Economy, Lucky Heng

Undergraduate Research Symposium Posters

Despite criticism, scientists have been continuing to find more evidence to prove that the threats on the coral reefs around the world are real. The impact of rising climate temperature, pollution, ocean acidification, etc. has been leading to increasing amounts of mass bleaching and a massive decline in coral reefs in past decades. This research study utilizes a systematic literature review and secondary research to collect, analyze and provide evidence that climate change impacts the ecosystem, and marine life (coral reefs) species on the planet. By addressing the impact of climate change and its significance on the ecosystem and global …

Larval Ecology Of Atlantic Bluefin Tuna (Thunnus Thynnus): New Insights From Otolith Microstructure, Biotic, And Abiotic Analyses From The Gulf Of Mexico And Mediterranean Sea, Estrella Malca

All HCAS Student Capstones, Theses, and Dissertations

Atlantic bluefin tuna (ABT), Thunnus thynnus, spawn in the Gulf of Mexico (GoM) and the Mediterranean Sea (MED). Spawning occurs within narrow temporal and environmental parameters. Efforts to characterize growth of ABT in wild conditions revealed a wide range of growth variability during the early life stages. This series of studies examined potential biotic and abiotic influences of larval growth from seven ABT cohorts, and identified several key drivers of growth for this commercially valuable species. A detailed investigation of larval dynamics using otolith microstructure was conducted as follows. First, companion growth curves and stable isotope analysis from the same …

Atlantic Surfclam (Spisula Solidissima) Population Demographics And Distribution Along The Middle Atlantic Bight, Mauricio González Díaz

OES Theses and Dissertations

The Atlantic surfclam (Spisula solidissima) is a long-lived benthic biomass dominant organism that occurs on the Middle Atlantic Bight (MAB) continental shelf between 10 m and 50 m. Trends in Atlantic surfclam population specific growth and mortality rates were analyzed using four decades of age and length observations obtained from NOAA stock surveys from the 1980s to 2010s in six regions distributed along the MAB. Atlantic surfclam specific growth rates and asymptotic lengths were estimated from the age and length observations using the von Bertalanffy growth model. The analysis showed that the Atlantic surfclam median asymptotic length in …

Nexus Between Animal Welfare, Environment, And Sustainable Development: Resource Document, Wellbeing International

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

This Resource Document has been developed to explore the Nexus (links) between Animal Welfare, the Environment, and Sustainable Development. The document includes relevant citations and reports addressing the topics encompassed by the Nexus. It will be maintained as a “living document” (subject to revision) in the WellBeing International Studies Repository. The original document and subsequent revisions will be kept in the Repository to provide a record of the changes.

Using Stable Isotope Analyses To Assess The Trophic Ecology Of Scleractinian Corals, Michael P. Lesser, Marc Slattery, Keir J. Macartney

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Studies on the trophic ecology of scleractinian corals often include stable isotope analyses of tissue and symbiont carbon and nitrogen. These approaches have provided critical insights into the trophic sources and sinks that are essential to understanding larger-scale carbon and nitrogen budgets on coral reefs. While stable isotopes have identified most shallow water (<30 m) corals as mixotrophic, with variable dependencies on autotrophic versus heterotrophic resources, corals in the mesophotic zone (~30–150 m) transition to heterotrophy with increasing depth because of decreased photosynthetic productivity. Recently, these interpretations of the stable isotope data to distinguish between autotrophy and heterotrophy have been criticized because they are confounded by increased nutrients, reverse translocation of photosynthate, and changes in irradiance that do not influence photosynthate translocation. Here we critically examine the studies that support these criticisms and show that they are contextually not relevant to interpreting the transition to heterotrophy in corals from shallow to mesophotic depths. Additionally, new data and a re-analysis of previously published data show that additional information (e.g., skeletal isotopic analysis) improves the interpretation of bulk stable isotope data in determining when a transition from primary dependence on autotrophy to heterotrophy occurs in scleractinian corals.

Microbiome Diversity And Metabolic Capacity Determines The Trophic Ecology Of The Holobiont In Caribbean Sponges, Michael P. Lesser, M. Sabrina Pankey, Marc Slattery, Keir J. Macartney, Deborah J. Gochfeld

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Sponges are increasingly recognized as an ecologically important taxon on coral reefs, representing significant biomass and biodiversity where sponges have replaced scleractinian corals. Most sponge species can be divided into two symbiotic states based on symbiont community structure and abundance (i.e., the microbiome), and are characterized as high microbial abundance (HMA) or low microbial abundance (LMA) sponges. Across the Caribbean, sponge species of the HMA or LMA symbiotic states differ in metabolic capacity, as well as their trophic ecology. A metagenetic analysis of symbiont 16 S rRNA and metagenomes showed that HMA sponge microbiomes are more functionally diverse than LMA …

Islands In The Mud: The South Texas Banks Provide Crucial Mesophotic Habitat For Coral Communities, Maria Bollinger, Keir J. Macartney, Erin E. Easton, David Hicks

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

On the continental shelf off the coast of South Texas lie a series of natural hard-bottom structures (rocky outcrops and relic coral-algal reefs) known as the South Texas Banks (STB), which provide critical habitat for benthic organisms and pelagic fish. The depth of the banks, a persistent nepheloid layer, and strong currents have resulted in few studies that provide quantitative biodiversity data on the STB. Using a remotely operated vehicle (ROV), video surveys were conducted to quantitatively describe the mesophotic coral communities and assess habitat suitability of five STB: North Hospital, Hospital, Southern, Big Adam, and Mysterious Banks. Each of …

Concentration Of Heavy Metals In Three Distinct Algae Families From Humboldt County, California, Kodiak E. Miller, Caleb J. Strait, Jacob I. Begorre, Brittney L. Mitchell, Claire P. Till

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

Anthropogenic impacts on marine environments can impact metal fluxes and concentrations available to marine species. Monitoring these impacts is necessary to better understand the interactions between the biotic and abiotic components of these ecosystems and mitigate the risk posed by harmful toxins introduced by human activities. Biomoniters, like macroscopic algae, are useful indicators that illuminate the bioaccumulation of toxins commonly introduced from anthropogenic activity. With this in mind, the concentrations of heavy metals zinc (Zn), nickel (Ni), and copper (Cu) were analyzed via the assessment of algae (Representatives from Ulva, Mastocarpus, Fucus) in two sites in Humboldt County: …

Globally-Distributed Microbial Eukaryotes Exhibit Endemism At Deep-Sea Hydrothermal Vents, Sarah K. Hu, Amy R. Smith, Rika E. Anderson, Sean P. Sylva, Michael Setzer, Maria Steadmon, Kiana L. Frank, Eric W. Chan, Darlene S. S. Lim, John A. Breier

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from four geographically- and geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. The four vent fields include Axial Seamount at the Juan de Fuca Ridge, Sea Cliff and Apollo at the Gorda Ridge, all in the NE Pacific Ocean, and Piccard and Von Damm at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify …

Combined Effects Of Scarification, Phytohormones, Stratification, And Soil Type On The Germination And/Or Seedling Performance Of Three Tamaulipan Thornscrub Forest Species, Paula Luera, Christopher A. Gabler

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Tamaulipan thornforests in south Texas and northeast Mexico are a conservation hotspot. Shortages of native seedlings limit regional restoration and are largely driven by knowledge gaps regarding propagation of the 75+ thornforest species planted during restorations. We previously investigated three thornforest species with low or inconsistent germination or seedling survival: Ebenopsis ebano (Fabaceae), Cordia boissieri (Boraginaceae), and Zanthoxylum fagara (Rutaceae), and identified the types and dosages of chemical seed treatments that maximized germination. However, chemical treatments were performed in isolation and combinational treatments may be required to break dormancy or maximize germination. This study builds on prior work by investigating …

Treatments Of Cyanobacteria On Mariculture Sponges In Jambiani, Tanzania, Sally Thornton-White

Independent Study Project (ISP) Collection

Since 2009, Marine Cultures, an NGO, has explored sponge farming in Jambiani to develop secure and sustainable livelihoods for the community. While sponge farming provides economic opportunity for an industry that functions within ecological boundaries, it faces unique issues that threaten its success. As climate change increases global water temperatures, cyanobacteria are causing increased death rates among mariculture sponges. Mitigating these negative effects with sustainable and reliable solutions can help Marine Cultures grow their positive impact. Alternative methods for mitigating cyanobacteria growth were tested during three study phases. Phase 1 tested how sponge health and algae growth responds to being …

Using Low-Cost Sensors To Assess Pm2.5 Concentrations At Four South Texan Cities On The U.S.—Mexico Border, Esmeralda Mendez, Owen Temby, Dawid Wladyka, Katarzyna Sepielak, Amit U. Raysoni

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Low-cost sensors have been used considerably to characterize air pollution in the last few years. This study involves the usage of this technology for the first time to assess PM_2.5 pollution at four cities on the U.S.–Mexico border. These cities in the Lower Rio Grande Valley Region of South Texas are Brownsville, Edinburg, Weslaco, and Port Isabel. A year-long sampling campaign was undertaken from 1 March 2021 to 31 March 2022. TSI BlueSky™ Air Quality Monitors were deployed concurrently at 11 different locations in these four cities. Twenty-four-hour PM_2.5 concentrations from these sensors were then compared with ambient …

Irrigation Decisions In Response To Groundwater Salinity In Kansas, Juhee Lee, Nathan P. Hendricks

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Understanding the interaction between groundwater salinity and irrigation decision making has important implications for groundwater management. Econometrics models were estimated using observed farmer behavior in response to different groundwater salinity levels in a region of Kansas. Estimation results demonstrate that farmers in the face of groundwater salinity change their irrigation decisions on irrigated acreage (i.e., extensive margin), crop choice (i.e., indirect intensive margin), and water application depth (i.e., direct intensive margin). The empirical results indicate an overall decrease in water use due to higher salinity, primarily through a decrease at the extensive margin.

Why New Zealand’S Indigenous Reconciliation Process Has Failed To Empower Māori Fishers: Distributional, Procedural, And Recognition-Based Injustices, Hekia Bodwitch, Andrew M. Song, Owen Temby, John Reid, Megan Bailey, Gordon M. Hickey

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

How is it that the New Zealand government’s process for re-establishing Indigenous fishing rights has failed to deliver thriving Māori fisheries? This paper examines why, at Te Waihora, a coastal lake, and site of one of the nation’s longest running and best-funded state-Māori co-governance agreements, Māori fishers have been unable to use their rights to support their fishery. As of 2018, the lake’s culturally and ecologically significant eel population was no longer commercially viable, a decline fishers have attributed to rampant dairy industry expansion upstream. Drawing on environmental justice literatures, we deploy a multi-dimensional framework to identify factors shaping possibilities …

Fine Particulate Matter Concentrations During Independence Day Fireworks Display In The Lower Rio Grande Valley Region, South Texas, Usa, Esmeralda Mendez, Owen Temby, Dawid Wladyka, Katarzyna Sepielak, Amit U. Raysoni

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Fireworks are typically discharged as a mark of celebration and joy in many societies spanning various cultures. In the United States of America, 4th July is celebrated as the Independence Day when the nation overthrew the British colonial yoke in 1776. While this day instills a sense of patriotism in every American’s heart, it is also a major PM2.5 air pollution concern. This study is first of its type in the Lower Rio Grande Valley (RGV) Region of South Texas, USA, that characterizes fine particulate matter pollution. Using a low-cost sensor (TSI BlueSky Air Quality Monitor), real-time PM2.5 measurements were …

Influence Of Oyster Genetic Background On Levels Of Human-Pathogenic Vibrio Spp., Corinne Audemard, Kimberly S. Reece, Robert J. Latour, Lydia M. Bienlien, Ryan B. Carnegie

VIMS Articles

Human-pathogenic Vibrio bacteria are common inhabitants of oyster tissues, but our understanding of factors driving the wide range of concentrations found in individual oysters is extremely limited. We examined the influence of oyster sex and parasitism in light of their profound effects on oyster tissues against a backdrop of eastern oysters, Crassostrea virginica, from two diploid and two triploid aquacultured lines. This allowed us to examine not only the effect of oyster ploidy but also of oyster genetics, a factor never investigated with regard to human-pathogenic Vibrio species. We measured levels of total Vibrio vulnificus (vvhA), and of …

Benthic Community Dynamics And Stony Coral Demographics In Florida In Relation To Acute Disturbances And Chronic Pressures, Nicholas P. Jones

All HCAS Student Capstones, Theses, and Dissertations

The persistence of coral reef communities is threatened by a suite of pressures operating at varying spatial and temporal scales. In general, acute disturbances (short term stochastic events such as marine heatwaves or hurricanes) and chronic pressures, such as ocean warming, have caused the most significant changes to stony coral assemblages (order Scleractinia) and continue to impair recovery potential. Additionally, many coral reefs are subject to local chronic anthropogenic pressures resulting in poor water quality or sedimentation, which further impact stony corals and shape benthic community structure, particularly near urbanized coastlines. For the viability of communities on coral reefs, a …

Spatial Variation Of False Map Turtle (Graptemys Pseudogeographica) Bacterial Microbiota In The Lower Missouri River, United States, Joseph D. Madison, Madeline M. Butterfield, Drew R. Davis, Jacob L. Kerby

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Turtle populations around the world are continually confronted with changing environments that affect their ecology and conservation status. Among freshwater turtles, population dynamics are thought to be mediated by complex yet often cryptic causes. One recent direction of focus in addressing these causes is the turtle-associated microbiota. In turtles, the gut- associated microbiota is of exceptional interest due to its continual association with host species under changing conditions. Diet-based fluctuations and changes in microbial diversity may correspond to varying external environments at both the individual and population level. Environmental responses are of particular interest due to the anthropogenic changes that …

Chesapeake Bay National Estuarine Research Reserve In Virginia Management Plan: 2022-2027, W. G. Reay, J. Baber, H. Brooks, A. Demeo, C. T. Friedrichs, C. Gonzales, J. Kuriawa, T. Hooper, S. Lerberg, E. J. Miles, B. Neikirk, S. Nuss, L. Ott, D. Parrish, T. Rudo, E C. Shields, S. Snyder, S. Wood

Reports

Established through the Coastal Zone Management Act, the National Estuarine Research Reserve System (NERRS) represents a partnership program between the National Oceanic and Atmospheric Administration (NOAA) and the coastal states to promote informed management of the Nation’s estuaries and habitats. Designated in 1991, and administered by the Virginia Institute of Marine Science (VIMS) of William & Mary, the Chesapeake Bay National Estuarine Research Reserve in Virginia (CBNERR-VA or Reserve) is one of 30 protected areas, which encompass over 1.3 million acres and make up the NERRS.

As the nation's largest estuary, the Chesapeake Bay contains a diverse collection of habitats …

Defining The Current Distribution Of The Imperiled Black-Spotted Newt Across South Texas, Usa, Padraic S. Robinson, Drew R. Davis, Sean M. Collins, Richard J. Kline

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The Black-spotted Newt (Notophthalmus meridionalis) is a chronically understudied salamander species, with many aspects of its natural history, ecology, and distribution poorly known. Previous studies using traditional methodologies have had limited success documenting N. meridionalis on the landscape, detecting individuals at 6% (7 of 114) and 1% (2 of 221) of sites surveyed. A novel environmental DNA (eDNA) assay was designed and implemented with the goals of assessing the current distribution of N. meridionalis across south Texas, USA, and better understanding the conditions for positive eDNA detections. We conducted eDNA sampling and traditional surveys at 80 sites throughout …

Analysis Of Urbanization And Climate Change Effects On Community Resilience In The Rio Grande Valley, South Texas, George Atisa, Alexis Racelis

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Disruptive development events have tested and will continue to test community resilience as people work to balance healthy living, economic growth, and environmental quality. Aspects of urbanization, if not designed and guided by healthy living strategies, convert natural areas into built environments, thus reducing the diversity of plant and animal species that are the foundation of resilience in communities. In this study, we attempted to answer the following question: What are the most effective ways to ensure that ongoing urbanization and climate change do not negatively affect ecological services and community resilience in the Rio Grande Valley (RGV)? The region …

Effect Of Ultraviolet Light Treatment On Microbiological Safety And Quality Of Fresh Produce: An Overview, Veerachandra K. Yemmireddy, Achyut Adhikari, Juan Moreira

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Fresh and fresh-cut fruits and vegetables have been associated in several foodborne illness outbreaks. Although investigations from those outbreaks reported that the contamination with pathogenic microorganisms may occur at any point in the farm to fork continuum, effective control strategies are still being widely investigated. In that direction, the concept of hurdle technology involving a sequence of different interventions have been widely explored. Among those interventions, ultraviolet (UV) light alone or in combination with other treatments such as use of organic acids or sanitizer solutions, has found to be a promising approach to maintain the microbiological safety and quality of …

Iron And Magnesium Impregnation Of Avocado Seed Biochar For Aqueous Phosphate Removal, James Ji Hoon Kang, Jason Parsons, Sampath Gunukula, Dat T. Tran

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

There has been increasing interest in using biochar for nutrient removal from water, and its application for anionic nutrient removal such as in phosphate (PO₄³⁻) necessitates surface modifications of raw biochar. This study produced avocado seed biochar (AB), impregnated Fe- or Mg-(hydr)oxide onto biochar (post-pyrolysis), and tested their performance for aqueous phosphate removal. The Fe- or Mg-loaded biochar was prepared in either high (1:8 of biochar to metal salt in terms of mass ratio) or low (1:2) loading rates via the co-precipitation method. A total of 5 biochar materials (unmodified AB, AB + High Fe, AB …

Disaster Resilience Versus Ecological Resilience And The Proposed Second Causeway To South Padre Island, Juliet Vallejo, Katia Sanchez, Evelyn Roozee, Owen Temby

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The barrier island of South Padre is located off the coast of Texas’s southern tip in Cameron County and is a popular tourist destination with over 4 million annual visits. The only road access to and from the island is a four-lane causeway, 2.3 miles in length, that routinely experiences heavy traffic. Twenty years ago, a barge crashed into the Queen Isabella Causeway, destroying a portion of the bridge. It quickly became apparent how reliant South Padre Island (SPI) is on the causeway and raised questions regarding its lack of disaster resilience. Local boosters and government responded by proposing and …

Biomass Residues Improve Soil Chemical And Biological Properties Reestablishing Native Species In An Exposed Subsoil In Brazilian Cerrado, Thaís Soto Boni, Engil Isadora Pujol Pereira, Adriana Avelino Santos, Ana Maria Rodrigues Cassiolato, Kátia Luciene Maltoni

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Revegetation of exposed sub-soil, while a desirable strategy in the recovery processes, often fails due to extreme soil chemical properties, such as low organic matter and pH levels inhospitable to biological activities such as nutrients cycling and plant establishment. This is the case for approximately 800 ha of the Cerrado biome in Brazil, where erecting the embankment of a hydroelectric dam in the 1960’s stripped vegetation, soil, and subsoil layers thereby distorting the soil properties. This work evaluates the effectiveness of restoration management (RM) treatments, to restore the soil quality, including biological activity and chemical attributes. In a factorial scheme, …

A Participatory Assessment Of Nitrified Urine Fertilizer Use In Swayimane, South Africa: Crop Production Potential, Farmer Attitudes And Smallholder Challenges, Benjamin C. Wilde, Eva Lieberherr, Engil Isadora Pujol Pereira, Alfred Odindo, Johan Siz

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Long-term nutrient mining of soil hampers agricultural production across Africa. However, emerging sanitation technologies afford a hygienically safe and ecologically sustainable solution to this development challenge by providing fertilizers derived from human excreta that could facilitate a socio-technical transition toward a more sustainable food system. To evaluate one such technology, nitrified urine fertilizer (NUF), we conducted participatory action research to assess the potential, from both a biophysical and social perspective, of NUF to serve as a soil fertilizer to support smallholder agricultural production in Swayimane, South Africa. To achieve this objective, we formed a stakeholder group comprised of a cooperative …

Marine Ranching Version 3.0: History, Status And Prospects, Hongsheng Yang, Dewen Ding

Bulletin of Chinese Academy of Sciences (Chinese Version)

Since the 1930s, the construction of marine ranching has successively experienced the version 1.0 (traditional marine ranching) of farming-ranching and engineering, and the version 2.0 (marine ecological ranching) of ecologization and informatization, and now it is about to enter the version 3.0 (global aquatic ecological ranching) of digitalization and systematization, which covers seawater and fresh water. Marine ranching version 3.0 must adhere to the modern aquatic ecological ranching development concept of "ecology, precision, intelligence, integration", characterized by synchronous protection and utilization, expansion of scene and space, breakthrough in core technology, and innovation in development patterns. After establishing the whole industrial …

Quantitative Relationships Between River And Channel-Belt Planform Patterns, Tian Y. Dong, Timothy A. Goudge

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Channel planform patterns arise from internal dynamics of sediment transport and fluid flow in rivers and are affected by external controls such as valley confinement. Understanding whether these channel patterns are preserved in the rock record has critical implications for our ability to constrain past environmental conditions. Rivers are preserved as channel belts, which are one of the most ubiquitous and accessible parts of the sedimentary record, yet the relationship between river and channel-belt planform patterns remains unquantified. We analyzed planform patterns of rivers and channel belts from 30 systems globally. Channel patterns were classified using a graph theory-based metric, …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.