Marine Biology Commons^™

Population Dynamics Of The Little Gulper Shark (Centrophorus Uyato) And Community Analyses Of Elasmobranch Species In The Northern Gulf Of Mexico, Jacquelin Joye Hipes

USF Tampa Graduate Theses and Dissertations

In chapter 1 I describe the population dynamics of an understudied species of gulper shark, Centrophorus uyato (common name, the Little Gulper), found in the Northern Gulf of Mexico. Sharks in the family Centrophoridae are mid-sized, demersal fish, with seven species identified in North American waters. These deepwater species can be difficult to study due to the extreme depths at which they occur. During four longlining cruises from 2012-2014, 593 sharks were landed, predominantly in the Mississippi Canyon off the Louisiana coast. Mean depth of capture was 290 m. Supplementing these data are catch records for C. uyato from a …

A Functional Approach To Resolving The Biogeocomplexity Of Two Extreme Environments, Haydn Rubelmann Iii

USF Tampa Graduate Theses and Dissertations

The biodiversity of two distinct marine environments was observed to describe the biogeocomplexity of these extreme ecological systems. A shallow-water hydrothermal vent in Papua New Guinea served as a study of a thermophilic ecosystem influenced by arsenic rich vent fluids while a 60 m deep offshore primarily anoxic karst sink served as a study of an anaerobic sulfur-influenced habitat. Both environments support unique biological communities that are influenced by the physical and chemical pressures imposed on them by the harsh conditions of these systems. In Tutum Bay, Ambitle Isle, Papua New Guinea, a transect was created from a shallow hydrothermal …

Investigations Of The Physical And Analytical Chemistry Of Iron In Aqueous Solutions, James Patten

USF Tampa Graduate Theses and Dissertations

Although iron occurs at extremely low concentrations in the world’s oceans, it is essential for all living organisms. It is the limiting nutrient in High Nutrient Low Chlorophyll (HNLC) areas of the ocean, and exerts critically important influences on levels of atmospheric CO₂ and the global carbon cycle. Understanding the chemical processes that govern the fluxes and biogeochemistry of oceanic iron requires thorough assessment of the aqueous physical chemistry of iron and analytical techniques capable of measuring iron at sub-nanomolar concentration measurements. This dissertation extends prior work on the physical and analytical chemistry of iron through (a) investigation of …

Growth Rates In Gulf Of Mexico Red Snapper, Lutjanus Campechanus, Before And After The Deepwater Horizon Blowout, Elizabeth Shea Herdter

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20^th, 2010 and released nearly 5 million barrels of crude oil into the northern Gulf of Mexico causing pollution of the water and sediment inhabited by many fishes for at least 87 days while the wellhead went uncapped. Populations of the Gulf of Mexico Red snapper, Lutjanus campechanus, an important fish to the ecology and economy in the region, exhibit affinity to shallow water oil infrastructure such as the Deepwater Horizon making them especially vulnerable to crude oil contamination. The objective of this study is to determine growth of Red …

Polycyclic Aromatic Hydrocarbon Metabolites As A Biomarker Of Exposure To Oil In Demersal Fishes Following The Deepwater Horizon Blowout, Susan Susan Snyder

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20th, 2010, releasing 4.9 million barrels of Louisiana crude oil into the Gulf of Mexico (GoM). Subsequent to the Deepwater Horizon blowout, sediment cores revealed oil on the northern GoM seafloor and abnormal skin lesions were seen in GoM fishes. Exposure to polycyclic aromatic hydrocarbons (PAHs), a component of crude oil, in fish has been associated with many sublethal effects, including cancer and population-level effects. Using a biomarker of exposure to PAHs, this thesis evaluates inter-species, temporal and spatial differences in exposure to hydrocarbon contamination between three species of fish with varying levels …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Dynamics And Survival Of Coral And Octocoral Juveniles Following Disturbance On Patch Reefs Of The Florida Reef Tract, Lucy Bartlett

USF Tampa Graduate Theses and Dissertations

Over the past several decades, rapid decline in adult stony-coral (comprising the Orders Scleractinia and Anthomedusae, specifically Family Milleporidae) cover has occurred concurrent with an increase in adult octocoral (Octocorallia/gorgonian) cover along the Florida Reef Tract. In January 2010, the Florida Keys experienced extremely cold air and water temperatures, below the lethal threshold for many reef organisms including corals. Very high stony-coral mortality occurred on some patch reefs. The newly-available space created by this disturbance event provided the opportunity for recruitment and settlement of new coral larvae and other reef organisms.

The goal of this study was to examine post-disturbance …

Assessments Of Surface-Pelagic Drift Communities And Behavior Of Early Juvenile Sea Turtles In The Northern Gulf Of Mexico, Robert F. Hardy

USF Tampa Graduate Theses and Dissertations

Knowledge of species distribution and habitat associations are essential for conservation measures. Such information is lacking for many marine species due to their occupancy of broad and ephemeral habitats that are difficult to access for study. Sea turtles, specifically the surface-pelagic juvenile stage of some species, are a group for which significant knowledge gaps remain surrounding their distribution and habitat use. Recent research has confirmed the long-standing hypothesis that the surface-pelagic juvenile stage occurs within surface-pelagic drift communities (SPDC). Within the North Atlantic and surrounding basins, the holopelagic macroalgae Sargassum spp. dominates SPDC and serves as a remotely-detectable indicator of …

Bathymetric Alterations Due To Urbanization And Their Effects On Residual Salinity, Flow Field And Transport Time For Tampa Bay, Florida, Amanda J. Linville

USF Tampa Graduate Theses and Dissertations

Growth and development over the past one hundred years has resulted in the construction of causeways and navigational channels in Tampa Bay. Urbanization has lead to bathymetric alterations of the bay, and thus has effectively changed the residual salinity, flow fields, and transport time in Tampa Bay. In this study a numerical ocean model of Tampa Bay was first used to simulate the circulation for 2001-2003 using present day bathymetry. Then, an identical simulation was performed using the bathymetry generated from 1879 depth soundings. The residual (30-day time average) circulation fields and salinity, along with transport times was intercompared for …

An Evaluation Of The Along Track Reef Imaging System (Atris) For Efficient Reef Monitoring And Rapid Groundtruthing Of Eaarl Lidar, Nicole O. Caesar

USF Tampa Graduate Theses and Dissertations

The Along-Track Reef-Imaging System (ATRIS) is a vessel-mounted, digital camera, depth sounder and Global Positioning System (GPS) package that facilitates the rapid capture of underwater images in shallow-water benthic environments. This technology has the potential to collect ecologically significant data, particularly in benthic habitats less than 10 m in depth, with better location referencing and in less time than is required for surveys carried out by Scuba divers. In October 2004, ATRIS was tested coincidently with SCUBA-assisted video along transects on five patch reefs in Biscayne National Park. Images from both data sets were subsampled, viewed, and benthic cover under …

Assessment Of Image Analysis As A Measure Of Scleractinian Coral Growth, Steven K. Gustafson

USF Tampa Graduate Theses and Dissertations

Image analysis was used to measure basal areas of selected colonies of Montastraea annularis and Porites astreoides, following the colonies over a three-year period from 2002 to 2004. Existing digital images of permanently-marked quadrats in the Caye Caulker Marine Reserve, Belize, were selected based on image quality and availability of images of selected quadrats for all three years. Annual growth rates were calculated from the basal-area measurements. Mean growth rates (radial skeletal extension) for M. annularis and P. astreoides were 0.02 cm yr-1 and -0.20 cm yr-1, respectively. Basal area measurements demonstrated a large degree of variability. Increases were approximately …

Evaluation Of Automated Ribotyping As A Tool For Bacterial Source Tracking In Aquatic Environments, Tracy L. Idocks

USF Tampa Graduate Theses and Dissertations

An Escherichia coli ribotype profile library was created for the Tampa Bay watershed for application to bacterial source tracking of human or non-human fecal contamination to the bay and surrounding rivers. Bacterial source tracking uses a variety of methods to identify the source of fecal contamination, not just the quantity of the indicator bacteria present, allowing implementation of effective management practices. The 700 confirmed E. coli isolate library was equally distributed among four sources: human, bird, dog and cow. The library was tested for applicability for source tracking within the Tampa Bay watershed. The DuPont Qualicon RiboPrinter® Microbial Characterization System, …

Assessment Of Current And New Methods For Investigating The Occurrence Of Enteric Pathogens In Ambient Waters And Water Sources For Rehydration Of A Floridan Wetland, Walter Quintero-Betancourt

USF Tampa Graduate Theses and Dissertations

Water quality assessment is currently used for determining the risks from contamination with waterborne pathogenic microorganisms. The public health. significance of such microorganisms cannot be fully understood without the application of reliable environmental monitoring techniques that provide efficient recovery as well as information on the infectious potential of specific isolates. This research was carried out to assess the analytical performance of current and new methods for investigating the occurrence of waterborne Cryptosporidium oocysts in samples of surface water, groundwater and reclaimed water used for public access irrigation in the State of Florida.

Method 1623 of the U.S Environmental Protection Agency …

Florida Red Tides From A Scientific And Public Information Perspective, Kristen M. Kusek

USF Tampa Graduate Theses and Dissertations

This thesis consists of a comprehensive historical review and evaluation of Florida red tide research and a multifaceted analysis of red tide coverage by the St. Petersburg Times from 1953 to 1997. Red tides caused by Gymnodinium breve along the Florida Gulf coast are riddled with complexity; scientists have been asking many of the same questions for nearly 50 years. Red tides also attract considerable media publicity. This thesis addressed the following: 1. What have scientists learned about Florida red tides since G. breve was identified in 1948?, and 2. How well was the issue covered by the newspaper media? …

Chemical Fate Of Bunker C Fuel Oil In A Subtropical Marine Environment Following A Spill In Tampa Bay, Florida, Dana Lynn Wetzel

USF Tampa Graduate Theses and Dissertations

A hydrocarbon chemistry study was performed on sediments, oil masses and mangrove prop roots of a mangrove island in Boca Ciega Bay, Florida following a spill of Bunker C fuel oil in Tampa Bay. Normal alkane (n-alkane) and polycylic aromatic hydrocarbon (PAH) profiles were monitored for effects of degradation and weathering in these mediums for a period of one year. Initial findings indicated a loss of lower molecular weight n-alkanes and PAH's in sediments and prop roots. There was little or no loss of these low molecular weight components in the oil mass samples. Hydrocarbon profiles at the end of …

Stable Hydrogen And Carbon Isotopic Compositions Of Biogenic Methanes, Roger Allen Burke Jr.

USF Tampa Graduate Theses and Dissertations

Stable hydrogen and carbon isotopic compositions of biogenic methanes collected from the sediments of several deep-sea, nearshore marine-estuarine, and freshwater environments were determined. The isotopic compositions of methane samples from eight different DSDP Sites (mean σD-CH₄ = -185⁰>/∞, std. dev. = 7⁰>/∞, n = 75; mean σ¹³C-CH₄ = -71.3⁰/∞, std. dev. = 6.3⁰/∞, n = 44) are generally typical of methane formed via C0₂ reduction in deep-sea sediments.

Methane collected from several freshwater environments was D-depleted (mean σD-CH₄ = -300⁰>/∞ , std. dev. = …

Uptake Of Zn65 And Mn54 Into Body Tissues And Renal Granules By The Southern Quahog, Mercenaria Campechiensis, William Lynn Miller Jr.

USF Tampa Graduate Theses and Dissertations

A study was conducted to examine the influence of elevated inorganic phosphate and trace metal concentrations on the uptake and distribution of Zn⁶⁵ and Mn⁵⁴ into the body tissue and phosphoritic renal concretions of a subtropical estuarine bivalve, Mercenaria campechiensis. Chronological sampling of gills, mantle, adductor muscle, viscera, kidneys, and renal granules using gamma ray spectrometry allowed examination of both tissue distribution and accumulation patterns over time. The kidney was the principal site of Mn⁵⁴ accumulation whereas Zn⁶⁵ was concentrated in both the gill and the kidney. The gill initially accumulated zn65 three times faster …

Reproductive Variability In Lytechinus Variegatus (Echinodermata: Echinoidea) From Different Habitats In A Florida West Coast Estuary, Robert G. Ernest

USF Tampa Graduate Theses and Dissertations

Lytechinus variegatus (Lamarck, 1916) is a sea urchin inhabiting shallow sub-littoral environments from Beaufort, North Carolina to southern Brazil. Although it has been collected extensively for embryological material in the southeastern United States (Harvey, 1956; Brookbank, 1968). there have been relatively few studies of its reproduction. Gonad indices were used to follow its annual reproductive cycle at Bermuda and Miami (Moore et al., 1963; Moore and Lopez, 1972), while elsewhere, only observations of spawn- ing have been reported (Boolootian, 1966).

In the Anclote estuary near Tarpon Springs, Florida, Lytechinus is the most conspicuous of the macroepibenthic invertebrates, and where requisite …