Marine Biology Commons^™

Atlantic Surfclam (Spisula Solidissima) Population Demographics And Distribution Along The Middle Atlantic Bight, Mauricio González Díaz

OES Theses and Dissertations

The Atlantic surfclam (Spisula solidissima) is a long-lived benthic biomass dominant organism that occurs on the Middle Atlantic Bight (MAB) continental shelf between 10 m and 50 m. Trends in Atlantic surfclam population specific growth and mortality rates were analyzed using four decades of age and length observations obtained from NOAA stock surveys from the 1980s to 2010s in six regions distributed along the MAB. Atlantic surfclam specific growth rates and asymptotic lengths were estimated from the age and length observations using the von Bertalanffy growth model. The analysis showed that the Atlantic surfclam median asymptotic length in …

Phytoplankton Community Response To Upwelling Events: Distribution And Abundance Investigated Using Genomic Methods, Sveinn V. Einarsson

OES Theses and Dissertations

Upwelling events are known to support blooms of phytoplankton, important primary producers at the base of the oceanic food web. Phytoplankton community structure changes in response to upwelling support higher trophic level growth and increased efficiency of carbon export from the euphotic zone. While these events occur globally, this study examined upwelling in coastal regions, where alongshore winds can drive Ekman transport and upwelling of deeper waters. The two upwelling regimes examined were the California Current System and the Alaskan Beaufort Sea. In the California Current System, the relative diatom community composition was examined using 18S sequencing to determine how …

Nutrient Controls Over Cyanobacterial Synthesis Of The Neurotoxin Β-N-Methylamino-L-Alanine (Bmaa) And Its Potential Accumulation In The Blue Crab (Callinectes Sapidus), Madeline M. Hummel

OES Theses and Dissertations

Cyanobacteria are known to produce a variety of toxins that negatively impact both aquatic and terrestrial organisms. One putative neurotoxic compound is the non-protein amino acid β-N-methylamino-L-alanine (BMAA), which has epidemiological linkages to the development of several human neurological diseases. Three cyanobacterial species thought to produce BMAA —Microcystis aeruginosa, Synechococcus bacillaris, and Nostoc sp. —were grown in nutrient replete cultures to examine its synthesis and cellular distribution over a growth cycle. Production of BMAA was also examined in nutrient (nitrogen and phosphorus) deplete cultures of Microcystis aeruginosa. In addition, natural assemblages of phytoplankton dominated by …

Life History And Management Methods For Blueline Tilefish (Caulolatilus Microps) From The United States Mid-Atlantic Region, Michael A. Schmidtke

OES Theses and Dissertations

Blueline tilefish (Caulolatilus microps) have recently undergone an increase in landings from waters off the US Mid-Atlantic region (Virginia-Massachusetts). Currently, life history characteristics of blueline tilefish in this area are undescribed. Additionally, appropriate indices of population abundance are not available for this region, necessitating the use of data-limited management methods to set restrictions for harvest of blueline tilefish in this area. This dissertation describes growth and reproductive characteristics of blueline tilefish caught off the coast of Virginia and explores improvements of data-limited management methods that have been applied to blueline tilefish in the US Mid-Atlantic. Blueline tilefish from …

Predation Thresholds In Marine Microbial Communities Applied To Environments With Low Prey Abundances, Bonnie Bailey

OES Theses and Dissertations

Prokaryotes (Bacteria and Archaea) comprise the largest component of biomass in the world's oceans. Their abundances are controlled by resource availability, viral infections and protist grazing. Many pico- and nano-eukaryotic predators grow almost as quickly as their prey, and greatly increase in numbers as soon as their prey do, leading in tum to depletion in prokaryotes. It is still unclear however, as to what extent microbial predators are able to feed in low prey environments, most prominently in the largest biome on Earth, the deep sea (below l 000 m depth). It has been hypothesized that in low prey environments, …

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Response Of Natural Estuarine Algal Communities To Nitrogen Additions, Christopher Schweitzer

OES Theses and Dissertations

Coastal eutrophication resulting from nutrient over-enrichment plagues coastal waterways worldwide. In addition to dissolved inorganic N, many marine microbes, including phytoplankton, have the capacity to use certain dissolved organic nitrogen (DON) compounds. However, while we know that many specific DON compounds are labile, the bulk of the DON pool in nature is uncharacterized. The bioavailability of DON to estuarine microbes currently remains unclear.

It is becoming evident that natural phytoplankton assemblages in estuarine waters are capable of using both inorganic and organic N compounds for growth, both of which are present in anthropogenic point and non-point source discharges. Methods for …

Environmental And Physiological Influences On Productivity And Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.), Meredith Leigh Mcpherson

OES Theses and Dissertations

A short-term longitudinal study was used to examine the relations of achievement motivation, general motivation, interest, and self-regulatory predictors to cognitive strategy use and academic performance. A total of 102 college undergraduates enrolled in their first college-level introductory psychology course completed an Achieving Tendency Scale of achievement motivation, the Motivated Strategies For Learning Questionnaire, and an Interest Profile in psychology during the first two weeks of the semester. At midterm they completed the Study Activity Survey of cognitive strategy use. At the end of the semester exam grades, total points earned in the course, and grade point average were obtained. …

Assessing Movement Of Fish Through Spectral Analysis Of Otolith Life History Scans, Renee Reilly Hoover

OES Theses and Dissertations

The ability to accurately measure movement timing across environmental gradients is fundamental for testing hypotheses in marine ecology that deal with ingress, egress, and migration of fish. Timing and patterns of movement have been estimated using life-history scans of the chemical signatures encoded in fish otoliths (ear stones). I provide a quantitative approach to examining life history scan data using spectral analysis, which retrospectively measures the movement timing for individual fish. Sagittal otoliths from juvenile Atlantic croaker (Micropogonias undulates) and adult black sea bass (Centropristis striata) were sampled using laser ablation inductively coupled plasma mass spectrometry …

Circulation Of The Western Antarctic Peninsula: Implications For Biological Production, Maria Andrea Piñones Valenzuela

OES Theses and Dissertations

The western Antarctic Peninsula (wAP) continental shelf is characterized by large persistent populations of Antarctic krill ( Enphausia superba) and by regions of enhanced concentrations of marine mammals and other predators (hot spots). This study focused on understanding the role of ocean circulation in providing retention/connectivity of wAP Antarctic krill populations and in maintaining biological hot spot regions. Numerical Lagrangian particle tracking simulations obtained from the Regional Ocean Modeling System (ROMS) configured for the wAP region provided quantitative estimates of retention, immigration and emigration from the wAP continental shelf. Additional simulations with a one-dimensional temperature-dependent growth model for krill …

Population Dynamics Of Sheepshead (Archosargus Probatocephalus; Walbaum 1792) In The Chesapeake Bay Region: A Comparison To Other Areas And An Assessment Of Their Current Status, Joseph Charles Ballenger

OES Theses and Dissertations

Sheepshead recently have seen an increase in fishing pressure in Virginian waters of the Chesapeake Bay. This increase in fishing pressure has led to demands to install effective management measures to protect the fishery. However, no study regarding the population dynamics, and thus potential yield, of sheepshead has been conducted north of Cape Hatteras. We addressed the need for information regarding the population dynamics of Chesapeake Bay sheepshead by investigating their age distribution, growth rate and reproductive biology. We used this information to construct yield-per-recruit models, which local management agencies may use in the formation of scientifically based management measures. …

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …

Changing Fecundity And Reproductive Output In Females Of A Chesapeake Bay Population Of Blue Crab, Callinectes Sapidus, Shannon L. Wells

OES Theses and Dissertations

The Chesapeake Bay blue crab, Callinectes sapidus, is an important species both ecologically and as a fishery. Fishery dependent and independent data indicate that the population declined abruptly in the mid-1990s and has remained low. Previous work prior to the decline in population abundance found a significant relationship between size and fecundity for mature females. As with many heavily fished populations, this population has experienced a reduction in the size at maturity. The objectives of this study were to reassess the fecundity of the population, determine the lipid and protein energy allocated for reproduction, and to examine the concentrations …

A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton

OES Theses and Dissertations

Seagrasses are significant ecological and biogeochemical agents in shallow water ecosystems throughout the world. In many regions, seagrass meadows occupy a sufficient fraction of the coastal zone, and generate optical signatures that can be observed from space. Bio-optical models of light absorption and scattering by submerged plant canopies for certain species such as Thalassia testudinum and Zostera marina have successfully modeled the plane irradiance distribution and photosynthesis within the submerged canopies. Syringodium filiforme differs &om T. testudinttm and Z marina, in leaf morphology and canopy architecture. The objective of this study was to develop a radiative transfer model that …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

Interactions Between Phytoplankton And Bacteria In The Uptake Of Organic Compounds, Andrea Michel Rocha

OES Theses and Dissertations

The most common methods for estimating bacterial productivity are [³H]-leucine and [³H]-thymidine incorporation. Uptake of these compounds has been attributed primarily to bacteria; however, because dissolved organic nitrogen may be an important N source for some phytoplankton, the use of these compounds to estimate bacterial productivity needs to be reexamined. In order to ascertain whether phytoplankton could compete with bacteria on relevant timescales and thereby bias bacterial productivity estimates in estuaries, I examined the ability of cultured phytoplankton and size-fractionated natural populations to take up leucine and thymidine in systems seasonally dominated by phytoplankton mixotrophs. In …

Characterization Of Β-Lactam Resistant Pandemic Serotypes Of Vibrio Cholerae Isolated From Ships' Ballast Tanks And Coastal Waters, Amanda Lynn Goodrich

OES Theses and Dissertations

Vibrio cholerae serotypes 01 and 0139 are responsible for world-wide epidemics of cholera. These pandemic causing strains must possess genes that encode for the cholera toxin (CTX) and toxin co-regulated pili (TCP) in order to infect their hosts. In this study, 284 isolates of Vibrio cholerae from ballast and coastal waters were serotyped, with 11 % testing positive for serotype 01 and 21 % testing positive for serotype 0139. PCR assays were used to detect the presence of ctxA and tcpA genes in all positive isolates, none of which contained ctxA while 2% of the isolates contained tcpA. The 01 …

Age Validation And Reproductive Biology Of Bluefish, Pomatomus Saltatrix, Along The East Coast Of United States, Eric Robillard

OES Theses and Dissertations

I describe a new preparation technique that increases readability of otoliths, along with criteria for the interpretation of otolith microstructure of bluefish, Pomatomus saltatrix, collected from Florida to New York during 2001-2003 (n = 2652). I validated annulus formation in otoliths for ages 1 to 8 using marginal increment analysis and thus extended validation by four years to include the preponderance of age classes in the catch. Although otoliths are typically superior for ageing, bluefish are routinely aged with scales; thus a side-by-side comparison of otoliths versus scales is necessary before otoliths can supplant scales. When compared, precision …

Encystment, Excystment And Photosynthetic Activity In The Temporary Cysts Of Amphidinium Carterae, Steven R. Kibler

OES Theses and Dissertations

Although the formation of temporary cysts has been documented in several papers, the physiology of these stages has remained obscure. Research dealing with dinoflagellate resting stages has primarily targeted sexual cysts. Accordingly, formation, germination and photosynthetic activity in the temporary cysts of Amphidinium carterae have been investigated in the present study. The effect of light intensity upon cyst germination was tested by incubating temporary cysts at three different light intensities. In order to assess the potential for photosynthesis in cysts, cellular chlorophyll-a concentrations and cellular fluorescence were quantified during encystment. Photosynthetic carbon uptake of H¹⁴CO₃^- was …

Seasonal And Mesoscale Variability In The Distribution Of Antarctic Krill, Euphausia Superba, West Of The Antarctic Peninsula, Cathy Meyer Lascara

OES Theses and Dissertations

Observations collected between November 1991 and September 1993 during four multidisciplinary cruises were analyzed to provide a description of seasonal and mesoscale variability in the distribution and abundance of Antarctic krill, Euphausia superba, within continental shelf waters west of the Antarctic Peninsula and to investigate possible relationships between variability in krill distributions and variability in selected environmental parameters. Acoustic measurements of krill were made each season at designated locations to estimate the abundance of krill, in terms of vertically-integrated krill biomass and the number of aggregations, characterize the depth distribution of krill, and provide a quantitative description of the size, …

Description, Distribution, And Abundance Of The Blue Crab, Callinectes Sapidus (Rathbun), Spawning Stock Of The Lower Chesapeake Bay, Patrick John Geer

OES Theses and Dissertations

The lower Chesapeake Bay spawning stock of the blue crab, Callinectes sapidus, (Rathbun), is examined for seven years (1986 - 1992) in an attempt to better understand stock behavior. Three methods of post-stratification are used to describe the distribution and movement of the population over time. The three methods, density strata, geographic zones, and depth strata, did well in explaining movements of the population, indicating a trend of increased concentration of blue crabs near the eastern Bay late in the spawning season - October. The data suggest a bimodal period of spawning and a trimodal period of abundance. The …

Modeling Nutrient And Plankton Processes In The California Coastal Transition Zone, John Roland Moisan

OES Theses and Dissertations

Two time- and space-dependent, physical-bio-optical models have been developed for the California Coastal Transition Zone (CTZ) region with the overall objective of understanding and quantifying the processes th at contribute to the spatial and temporal development of nutrient and plankton distributions in the CTZ. The first of these models considers only time- and vertical processes at specific locations in the CTZ. The model food web components include: silicate, nitrate, ammonium, two phytoplankton size fractions, copepods, doliolids, euphausiids and a detritus pool. The wavelength dependent attenuation of the subsurface irradiance field, due to sea water, phytoplankton pigment concentrations and dissolved organic …

Plankton Transport Patterns And Residence Times Around A Tall Seamount: Simulation Results, Dorlisa Louise Hommel

OES Theses and Dissertations

A semi-spectral primitive equation circulation model was used to simulate flow over an isolated gaussian seamount. Model configuration was such that a Taylor Cap was generated in the flow over the seamount. Arrays of 100 drifters were released in the simulated flow fields at several depths (50, 100, 200, and 400 m) both upstream and over the seamount. For several experiments vertical behaviors were imposed on the drifters to simulate zooplankton migration patterns. The drifter simulations extended for three months. Drifter transport patterns were determined by the initial release position of the drifter relative to the Taylor Cap as well …

The Growth And Bioenergetics Of Callinectes Sapidus Larvae And The Effects Of Diet Quality On Larval Physiology, James J. Pletl

OES Theses and Dissertations

Food quality, especially ω3 polyunsaturated fatty acids (PUFA), can affect the physiology and metabolic efficiency of larvae of the blue crab, Callinectes sapidus. These affects may correlate with success in development and juvenile recruitment.

Larvae were exposed to two diets differing quantitatively in ω3 PUFA and respiration, excretion, growth, and feeding rates were measured for each larval stage and the megalopal stage. The energy partitioned to molts and specific dynamic action was also measured. T

he ω3 PUFA enriched diet resulted in a lower respiration rate when compared to the unsupplemented diet, but there was little differences in excretion …

The Effects Of Two Polycyclic Aromatic Hydrocarbons Benzo[A]Pyrene And Naphthalene On Reproductive Success Embryological Development Larval Physiology And Mortality Of The Mud Crab Rhithropanopeus Harisii (Gould), Gregory V. White

OES Theses and Dissertations

Polycyclic aromatic hydrocarbons (PAHs) such as naphthalene (Nap) and benzo[a]pyrene (B[a]P) are common in the water column and sediments of estuarine and coastal areas. The mud crab Rhithropanopeus harrisii was exposed to varying concentrations of Nap or B[a]P to determine the effects on reproductive success, embryological development, larval physiology and mortality. Nap and B[a]P decreased hatching success and prolonged embryological development. Both pollutants produced high abnormality frequencies for egg exposed larvae. Molt frequency and respiratory rates of larvae from non-exposed eggs were more chronically affected by these pollutants than were egg exposed larvae. The EC₅₀ concentrations were determined for …

The Temporal And Spatial Distribution Of Blue Crab Larvae On The Mid-Atlantic Bight Adjacent To The Chesapeake Bay, 1982-1983, Lyle Michael Varnell

OES Theses and Dissertations

Recruitment processes are important information for the management of commercially and recreationally exploited marine species. Recruitment processes of the Chesapeake Bay's most important commercial and recreational species, the blue crab, are unknown, due in part to the lack of knowledge of the processes directly preceeding recruitment.

The present study was undertaken to investigate and explain the movement and developmental patterns of blue crab larvae while offshore. Interannual and intraseasonal variations of these patterns were also examined.

Sampling occurred from May to November during 1982 and 1983. Larvae were collected at three depths (neuston layer (upper 10 cm), one meter and …

Picoplankton/Phytoplankton Dynamics In Hampton Roads, Virginia, Leslie E. Dorworth

OES Theses and Dissertations

The biomass distribution of the three main size components of the phytoplankton (net, nano, and picoplankton) was examined in the lower Chesapeake Bay. Work was done at two stations during the spring and neap tidal cycles when freshwater flow into the bay was at its seasonal minimum and maximum. Emphasis was placed on how the picoplankton ( < 2.0 μm, > 0.2 μm) reacted during the sampling period.

Picoplankton made up approximately 13% of the total biomass, during the observed time period, at the more oceanic station. The picoplankton fraction contributed up to 16% of the total biomass at the estuarine station. From this …

Population Variation In The Mitochondrial-Dna Of Two Marine Organisms: The Hard Shell Clam Mercenaria Spp. And The Killifish, Fundulus Heteroclitus, Bonnie Lynn Brown

OES Theses and Dissertations

The two major topics are covered in this dissertation: the integration of molecular genetic tools with applied aquacultural research and short-term evolutionary dynamics. The first study investigated the extent of geographic differentiation of native clam stocks along the U.S. east and Gulf coasts. Clam mitochondrial DNA (mtDNA) demonstrated size polymorphism (16.5-19.0 kb) and restriction site heteroplasmy. Size heteroplasmic individuals occurred at a frequencies of 0-89% in clam populations. Restriction site heteroplasmy occurred in 12% of the 317 individuals assayed. Results of the study indicated that although harbouring a wealth of genetic variation, clams from northern regions were similar and lacked …

Survival And Reproduction Of The Freshwater Grass Shrimp Palaemonetes Paludosus (Gibbes 1850) (Decapoda:Palaemonidae), In Saline Water, Brian Thomas Lowe

OES Theses and Dissertations

To determine the effects of salinity on adult and larval survival, egg deposition, egg hatching and metamorphosis, shrimp were held in the laboratory and exposed to treatment salinities ranging from O to 35 ppt. Tests on adult survival indicate a 96 hour LC-50 between 30 and 35 ppt. Longer term tests on adult survival showed high mortality in salinities greater than 15 ppt. Shrimp became ovigerous in salinities of O - 20 ppt with egg hatching and metamorphosis limited to O - 5 ppt. Starved- larvae hatched from field captured ovigerous females in O ppt were able to metamorphose in …

Phytoplankton Dynamics In The Very Low Salinity Region Of The James River Estuary, Virginia, U.S.A., Changho Moon

OES Theses and Dissertations

During summer and autumn discharge from the James River estuary, Virginia, was less than 120 _m³sec^-1. There was a peak phytoplankton biomass in the very low salinity region (defined as the location where surface salinity measured less than 0.5$ 0/00) and this peak represented five to ten times greater biomass than adjacent waters. The peak biomass occurred independent of the tidal state and the location of nutrient inputs. It disappeared during winter and spring, and nutrient limitation was not responsible for the low phytoplankton biomass, indicating there were physical, not chemical controlling factors.

The peak biomass …