Marine Biology Commons^™

The Relationship Between Biofouling Adhesion And Frequency Of Mechanical Cleaning To Control The Recruitment To Clear Coatings, Dylan Thomas Eggers

Theses and Dissertations

There is a need to control biofouling on sensors and transparent windows in the marine environment. Clear silicone coatings offer a method to reduce the adhesion strength of marine organisms to the surface, however, these also require mechanical cleaning to maintain the surfaces free of fouling. This research evaluated the performance of eighty seven formulations and took the top two candidates to investigate a) the frequencies of wiping required by a brush to maintain two coatings and uncoated glass surfaces free of fouling and b) the effects of clear silicone coatings fouling release properties on required frequencies. The panels were …

An Overview Of Serial Depletions Of Global Marine Fisheries 1950 To 2019, Alison Follmer

Biological Sciences Undergraduate Honors Theses

Overfishing is a global issue that poses a significant risk to the entire ocean ecosystem in diminishing biodiversity and ecosystem function. This thesis examined the pattern and pace of fisheries depletions due to commercial fishing during the past 70 years. The Food and Agriculture Organization of the United Nations (FAO) Division of Fisheries and Aquaculture maintains a database of global hauls of marine taxa (reported in metric tonnes) from 1950 – 2019. These data were queried to determine the total number and sequence of fisheries depletions documented by the historic record. Analysis of this database showed progressive, linearly-increasing exploitation of …

Determination Of Cadmium Uptake In Crassostrea Virginica Shell Under Controlled Conditions, Joseph John Pavelites Ii

<strong> Theses and Dissertations </strong>

The objective of this thesis was to meet growing demand for the development of environmental biomonitors that protect ecosystems and public health. To do this, I determined the potential of oyster shell as a bioindicator of cadmium (Cd) in the environment by determining the mode of Cd uptake and relationships between Cd concentrations in the environment, shell, and soft tissues of juvenile eastern oysters (Crassostrea virginica Gmelin). I performed a review of the literature on the ability of oyster shell to retain metal contaminants and the factors that could affect this process (Chapter 2). I then reared C. virginica …

Diatom Blooms In Harpswell Sound: Seasonality, Succession, And Origin, Charlie Francis O'Brien

Honors Projects

Harpswell Sound (HS) is an inlet in northeastern Casco Bay that exerts control on Gulf of Maine ecosystem health, yet its complex phytoplankton community dynamics have not been characterized with sufficiently detailed analyses. In this research, high-resolution automated microscopy and current velocity observations were used to test the seasonality, ecological succession, bloom origin location, and potential toxicity of populations in HS between 2020 and 2022. Winter months could exhibit slow accumulation of diatom biovolume. Cold, salty surface water has net outflow in winter as nutrients from depth are replenished during net upwelling conditions, and populations could be exported from the …

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

Benthic Community Dynamics And Stony Coral Demographics In Florida In Relation To Acute Disturbances And Chronic Pressures, Nicholas P. Jones

All HCAS Student Capstones, Theses, and Dissertations

The persistence of coral reef communities is threatened by a suite of pressures operating at varying spatial and temporal scales. In general, acute disturbances (short term stochastic events such as marine heatwaves or hurricanes) and chronic pressures, such as ocean warming, have caused the most significant changes to stony coral assemblages (order Scleractinia) and continue to impair recovery potential. Additionally, many coral reefs are subject to local chronic anthropogenic pressures resulting in poor water quality or sedimentation, which further impact stony corals and shape benthic community structure, particularly near urbanized coastlines. For the viability of communities on coral reefs, a …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.

Impacts Of Plastic Pollution On A Pelagic Marine Mammal, The Northern Elephant Seal, Lauren M. Kashiwabara

University of the Pacific Theses and Dissertations

As plastic pollution increases, top marine predators such as marine mammals are becoming increasingly susceptible to plastic particles and their additives. Plastic particles have been found in gastrointestinal tracts and scat of many marine mammals, and quantifying plastic pollution in those that are pelagic can provide insight into plastic pollution in mesopelagic ecosystems that are just beginning to be analyzed. Adapting well-developed laboratory techniques for microplastic (MP) isolation (i.e. density separation and chemical digestion), I isolated MPs from the scat of the deepest diving pinniped, the northern elephant seal (NES), and found that100% of scat samples (n=11) contained high counts …

The Potential Influence Of Abiotic Conditions On Mussel Species Abundance In San Francisco Bay, Alexandra G. Farrell, M. Christina Vasquez Dr.

Honors Thesis

Climate change has negatively altered seawater conditions, which may have severe implications for marine ecosystems. Mussels are susceptible to environmental changes since they are primary consumers and filter-feeding bivalves. Two species of particular interest to the West Coast of the U.S. are Mytilus galloprovincialis and M. trossulus. M. trossulus is native to the California Coast and was historically prevalent from Southern California to Washington. However, with increased shipping and rising seawater temperature, M. galloprovincialis, an invasive species from the Mediterranean, pushed the species range of M. trossulus poleward. M. trossulus is more tolerant of cold seawater with variable salinity while …

Prioritizing The Largest, Oldest Corals For Disease Intervention In A Coral Disease-Ravaged Area: Southeast Florida Coral Reef Ecosystem Conservation Area, Alysha Brunelle

All HCAS Student Capstones, Theses, and Dissertations

Coral diseases appear to be more devastating than ever before. When a virulent disease ravages a coral ecosystem, it can significantly change the population’s demographics and cause local extinctions. Disease intervention response during such an event is impossible at a landscape scale, therefore priorities must be considered. Saving the largest, oldest colonies of reef-building species is a good choice due to their high fecundity and ecological function. Their size, as a proxy for age, is an indicator of their resistance to previous perturbations which may indicate higher fitness. Their size also provides habitat to many organisms and wave resistance in …

Sea Level Rise Vulnerability Analysis Of Mangrove Ecosystems Using Gis, Kayla Caldwell

HCNSO Student Theses and Dissertations

Climate change is accelerating beyond what is natural due to excessive emissions from human activities. The sea level has been rising for many years and is currently at a rate of 3.6 mm/yr. Mangroves are known to only keep pace with a sea level rate of less than 1.2 mm/yr. Mangroves are particularly vulnerable to rising sea levels if they are not able to keep pace through vertical sediment accretion or inland migration. To test the vulnerability of the south Florida mangrove ecosystems to sea level rise, this study analyzed changes in the mangrove forest coverage of the Oleta River …

In The Eye Of The Storm: Houston After Hurricane Harvey, Brandon Tolentino-Serrano

Pomona Senior Theses

Situated in one of the wettest climates in America, Houston, TX has had a long history of heavy rains and unprecedented floods. Unfortunately, floods have become more common over the last few decades as climate change increases the frequency and intensity of hurricanes around the globe. To complicate matters further, Houston has quickly sprawled to accommodate over 2.5 billion people. Rapid urbanization has rendered the landscape even more susceptible to floods through excess concretization and watershed disturbance. This thesis traces the history of the Bayou City in relation to the damages caused by Hurricane Harvey. By mapping out the original …

Island Invasion: The Silent Crisis In Hawaii, Sophia Janssen

Pomona Senior Theses

Keeping out invasive species may, upon first review, seem like a trivial environmental cry from ecologists and deep environmentalists; a belated wish to return to an undeveloped world where nature was pristine. However invasive species create problems that impact all of us and can have far more severe consequences than changing a stunning landscape. These problems are heightened in islands like Hawaii, where the fragile ecosystems have developed over centuries of evolution and adaptation. The introduction of a disease-carrying mosquito can put the people of Hawaii at risk to many vector-born illnesses and create an epidemic, taking human life. The …

Ulva Spp. Bloom Dynamics In A Hyper-Eutrophic Estuary: Jamaica Bay, New York, Annesia Lamb

Dissertations, Theses, and Capstone Projects

In this dissertation, I present three studies that further our understanding of macroalgae identity, growth, and proliferation. Eutrophication is prevalent in shallow coastal ecosystems world-wide. One of the ecosystem consequences is the development of a bloom forming green marine macroalgae, Ulva spp. Ulva can have negative effects such as Zostera spp. degradation, fish, and shellfish declines. I performed assessments of (1) identity of the bloom-forming Ulva and other macroalgae assemblage, (2) physical, chemical, and biological drivers of Ulva bloom growth and proliferation, and (3) optimal irradiance and temperature requirements for early growth stages in Ulva linza.

The first study …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Detrital Protein Contributes To Oyster Nutrition And Growth In The Damariscotta Estuary, Maine, Usa, Cheyenne M. Adams

Electronic Theses and Dissertations

Oyster aquaculture is an expanding industry that relies on identifying and utilizing natural estuarine conditions for the economically viable production of a filter-feeding crop. The eastern oyster, Crassostrea virginica, is the principal species currently cultured in Maine. In addition to preferentially consumed phytoplankton, various detrital complexes (non-algal and/or non-living organic matter) may provide some nutrition to C. virginica between times of phytoplankton abundance. Here I investigated the importance of detrital proteins in supporting the growth of oysters cultured in the upper Damariscotta Estuary. Oyster aquaculture in this area is highly successful and previous reports indicate that labile detrital protein …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Pharmaceutical Contaminants As Stressors On Rocky Intertidal And Estuarine Organisms: A Case Study Of Fluoxetine, Joseph Richard Peters

Dissertations and Theses

Contaminants such as pharmaceuticals are of increasing concern due to their ubiquitous use and persistence in surface waters worldwide. Limited attention has been paid to the effects of pharmaceuticals on marine life, despite widespread detection of these contaminants in the marine environment. Of the existing studies, the majority assess the negative effects of pharmaceuticals over an exposure period of 30 days or less and focus on cellular and subcellular biomarkers. Longer studies are required to determine if chronic contaminant exposure poses risks to marine life at environmentally relevant concentrations. Also scarce in the literature is examination of whole organism effects …

Macrobenthic Communities In The Northern Gulf Of Mexico Hypoxic Zone: Testing The Pearson-Rosenberg Model, Shivakumar Shivarudrappa

Dissertations

The Pearson and Rosenberg (P-R) conceptual model of macrobenthic succession was used to assess the impact of hypoxia (dissolved oxygen [DO] ≤ 2 mg/L) on the macrobenthic community on the continental shelf of northern Gulf of Mexico for the first time. The model uses a stress-response relationship between environmental parameters and the macrobenthic community to determine the ecological condition of the benthic habitat. The ecological significance of dissolved oxygen in a benthic habitat is well understood. In addition, the annual recurrence of bottom-water hypoxia on the Louisiana/Texas shelf during summer months is well documented.

The P-R model illustrates the decreasing …

Factors Affecting Terrigenous Sedimentation In Coastal Bays With Coral Reefs: Implications For Monitoring The Effectiveness Of Watershed Restoration, Whitney Sears

Theses

In the Caribbean, sedimentation has been identified as a serious threat to coral reef communities. Although land-based sediment delivery to coastal waters harboring coral reefs occurs under natural conditions, human activities in the watersheds above reefs increases the erosion and delivery of terrigenous sediment to the reefs. Delivery of terrigenous sediment into marine areas below developed watersheds affects sedimentation rates, alters the composition and texture of sediments that are suspended in the water column, and/or sediments that are deposited on the sea floor and on corals.

St. John, U.S. Virgin Islands is an ideal location to study the effects of …

Management Recommendations For Restoration Of The Degraded Olympia Oyster, Ostrea Lurida Carpenter 1864 In Tomales Bay, Ca, Carolyn M. Gibson

Master's Projects and Capstones

This research addresses the effective restoration of Olympia oyster populations in Tomales Bay, Marin County, California. Chapter 2 provides background information on the Tomales Bay estuary, regional history, and ecology of the Olympia oyster. Following this background discussion, each of the three aforementioned degraders of Olympia oyster populations in Tomales Bay is presented: ocean acidification (Chapter 3), sedimentation (Chapter 4), and invasive species (Chapter 5). Each of these issues creates numerous barriers that require the attention of resource protection managers. Chapter 6 presents overall Research Conclusions and Chapter 7 identifies management recommendations to effectively begin the restoration of the Olympia …

Loggerhead Sea Turtle (Caretta Caretta) Hatchling Disorientation In Broward County, Florida, Allison Durland Donahou

HCNSO Student Theses and Dissertations

Hatchling disorientation after emergence is a major factor impacting sea turtle populations. This study utilized data from over 1,200 Florida Fish and Wildlife Conservation Commission (FWC) Marine Turtle Disorientation Report forms from years 2006 to 2011 to assess changes in the severity and locations of disorientation events and the impact of municipal beach lighting ordinances. While the FWC forms were completed for all sea turtle species observed, this study focused only on loggerhead sea turtles (Caretta caretta). A Disorientation Severity Index (DSI) was derived from the number of hatchlings and the direction of their tracks leaving the nests …

Determination Of The Ecological Condition Of Benthic Communities Affected By Polycyclic Aromatic Hydrocarbons In The Elizabeth River, Chesapeake Bay, Usa, Adam M. Webb

Biological Sciences Theses & Dissertations

The Southern Branch of the Elizabeth River, a tributary of Chesapeake Bay, has historically been polluted with hydrocarbon based industrial by-products. My study compared benthic community condition from two locations in the Southern Branch: the subtidal region near Money Point, historically affected by pollution of polycyclic aromatic hydrocarbons (PAHs), to a subtidal region near Blows Creek on the opposite shore that is putatively designated as unimpacted by P AH contamination. Samples from both study sites in the Southern Branch were compared to the benthic community condition of samples from the same habitat type designations collected as part of the Chesapeake …

Effects Of Salinity And Dissolved Organic Matter On Cu Toxicity To Americamysis Bahia In Estuarine Environments, Rabia Nasir

Theses and Dissertations (Comprehensive)

As salinity increases the geochemical speciation of Cu is altered as a result of organic/inorganic complexation/competition. Such salinity changes may further challenge the osmoregulatory capabilities of euryhaline organisms. This chemical-biological interaction complicates the understanding of the impacts of Cu in estuarine waters. Dissolved organic matter (DOM) has been widely established to be an important modifier of Cu toxicity in freshwaters however its effectiveness in modulating Cu toxicity across the range of salinities that occur in estuarine conditions has not been studied in a systematic manner. Site to site differences in DOM quality with respect to the potential for toxicity mitigation …

Multiple Approaches For Assessing Mangrove Biophysical And Biochemical Variables Using In Situ And Remote Sensing Techniques, Francisco Javier Flores De Santiago

Electronic Thesis and Dissertation Repository

Mangrove forests are important ecosystems and play a key role in maintaining the equilibrium in coastal lagoons and estuaries. However, in recent years, there has been a considerable loss of mangrove extension due to anthropogenic activities. Recent studies suggest that multiple in situ and remote sensing approaches must be carried out to understand the dynamics in these complex ecosystems. Therefore, the objective for this PhD dissertation is to develop multiple techniques for monitoring the seasonal biophysical and biochemical conditions of the mangrove forests. Particular objectives will include: i. Test the feasibility of using a Chlorophyll Content Index from a …

Stomach Content Analysis Of Stranded Bottlenose Dolphins, Tursiops Truncatus, In Virginia, 1987-1996, John Mcgurk

Biological Sciences Theses & Dissertations

I examined the stomach contents from 94 bottlenose dolphins, Tursiops truncatus, that were stranded along the Virginia coastline from 1987 through 1996. Samples from 1987 through 1991 were obtained from the National Museum of Natural History (NMNH) and samples from 1992 through 1996 were collected by the Virginia Marine Science Museum (VMSM) Stranding Team. Prey species were identified using fish otoliths and cephalopod beaks.

The dolphins examined fed on 23 species of fish and one genus of cephalopods. The primary prey species was Atlantic croaker (Micropogonias undulatus); secondary species were weakfish (Cynoscion regalia), spot (Leiostomus xanthurus), silver perch (Bairdiella chrysoura), …

Zooplankton Community Dynamics In The Elizabeth River, Virginia, William C. Sharp

Biological Sciences Theses & Dissertations

Zooplankton community structure and dynamics were studied over a 12 month period in the Elizabeth River, an industrially polluted tidal river in the Chesapeake Bay estuarine system. An additional site in this estuary (Hampton Roads) was sampled for comparative purposes. Multivariate analysis indicated five distinct temporal groups occurred during the year, but there were no significant differences in spatial composition within the river. Maximum zooplankton concentrations were observed in July and lowest abundances were observed in February, March, and November. Copepods, especially Acartia species, were the most abundant components of the zooplankton community, comprising 67 to 93% of the total …

Macrobenthic Communities Of An Industrialized Seaport Ecosystem: The Southern Branch Of The Elizabeth River, Virginia, Steven D. Hawthorne

Biological Sciences Theses & Dissertations

Macrobenthic invertebrates of an industrialized seaport ecosystem were studied seasonally from October, 1977 through July, 1978. Five stations were selected along the Southern Branch of the Elizabeth River, Virginia. The stations ranged from an area of heavy industrialization to a non-urbanized environment. At each station, bottom water was measured for salinity, temperature, dissolved oxygen, and pH. Within each sampling area, macrobenthic infauna! invertebrates were collected from in and out of channel sites along with sediment samples for various types of physicochemical analysis.

Community structure was spatially homogeneous at station sites and throughout the stations along the River. Slightly acidic pH …