Genetics and Genomics Commons^™

Fungal Planet Description Sheets: 1112–1181, P. W. Crous, D. A. Cowan, G. Maggs-Kölling, N. Yilmaz, E. Larsson, C. Angelini, T. E. Brandrud, J. D. W. Dearnaley, B. Dima, F. Dovana, Et Al.

Aspen Bibliography

Novel species of fungi described in this study include those from various countries as follows: Australia, Austroboletus asper on soil, Cylindromonium alloxyli on leaves of Alloxylon pinnatum, Davidhawksworthia quintiniae on leaves of Quintinia sieberi, Exophiala prostantherae on leaves of Prostanthera sp., Lactifluus lactiglaucus on soil, Linteromyces quintiniae (incl. Linteromyces gen. nov.) on leaves of Quintinia sieberi, Lophotrichus medusoides from stem tissue of Citrus garrawayi, Mycena pulchra on soil, Neocalonectria tristaniopsidis (incl. Neocalonectria gen. nov.) and Xyladictyochaeta tristaniopsidis on leaves of Tristaniopsis collina, Parasarocladium tasmanniae on leaves of Tasmannia insipida, Phytophthora aquae-cooljarloo from pond water, Serendipita whamiae as …

Aspen Soils Retain More Dissolved Organic Carbon Than Conifer Soils In A Sorption Experiment, Antra Boča, Astrid R. Jacobson, Helga Van Miegroet

Aspen Bibliography

The effect tree species have on soil organic carbon (SOC) has been hotly debated but, so far, few clear patterns have emerged. One example of a differing tree species effect on SOC are aspen forests in North America, which have been found to have more stable SOC than adjacent conifer forest stands. An important source for the formation of stable organo-mineral complexes in soil is dissolved organic carbon (DOC). DOC concentrations in mineral soil are often higher under the thick O-horizons of conifer forests than under aspen forests, but this does not correspond to more stable mineral SOC. This suggests …

Molecular Identification And Characterization Of Viral Pathogens Infecting Sweet Cherry, Aaron J. Simkovich

Electronic Thesis and Dissertation Repository

Stone fruits are a valuable crop grown worldwide, however pathogens such as viruses threaten fruit production by reducing tree health and fruit yield. In an orchard within the Niagara region of Ontario, symptoms typical of viral infection such as chlorosis and leaf deformation were seen on sweet cherry (Prunus avium L.) trees. Next generation sequencing was performed on symptomatic and asymptomatic leaves and four viruses were identified. On the tree displaying the most severe symptoms, Prune dwarf virus (PDV), was the only virus detected. A survey conducted during this work showed 42% of cherry trees on a single …

Mechanistic Insights Into Strigolactone Biosynthesis, Signaling And Regulation During Plant Growth And Development, Kaiser Iqbal Wani, Andleeb Zehra, Sadaf Choudhary, M Naeem, M. Masroor A. Khan, Christian Danve Castroverde, Tariq Aftab

Biology Faculty Publications

Strigolactones (SLs) constitute a group of carotenoid-derived phytohormones with butenolide moieties. These hormones are involved in various functions, including regulation of secondary growth, shoot branching and hypocotyl elongation, and stimulation of seed germination. SLs also control hyphal branching of arbuscular mycorrhizal (AM) fungi, and mediate responses to both abiotic and biotic cues. Most of these functions stem from the interplay of SLs with other hormones, enabling plants to appropriately respond to changing environmental conditions. This dynamic interplay provides opportunities for phytohormones to modulate and augment one another. In this article, we review our current mechanistic understanding of SL biosynthesis, receptors …

Simulated Fire Behavior And Fine-Scale Forest Structure Following Conifer Removal In Aspen-Conifer Forests In The Lake Tahoe Basin, Usa, Justin P. Ziegler, Chad M. Hoffman, Brandon M. Collins, Jonathan W. Long, Christa M. Dagley, William Mell

Aspen Bibliography

Quaking aspen is found in western forests of the United States and is currently at risk of loss due to conifer competition at within-stand scales. Wildfires in these forests are impactful owing to conifer infilling during prolonged fire suppression post-Euro-American settlement. Here, restoration cuttings seek to impact wildfire behavior and aspen growing conditions. In this study, we explored how actual and hypothetical cuttings with a range of conifer removal intensity altered surface fuel and overstory structure at stand and fine scales. We then simulated wildfires, examining fire behavior and effects on post-fire forest structures around aspen trees. We found that …

Drought- Conditioning Of Quaking Aspen (Populus Tremuloides Michx.) Seedlings During Nursery Production Modifies Seedling Anatomy And Physiology, Joshua L. Sloan, Owen T. Burney, Jeremiah R. Pinto

Aspen Bibliography

In the western US, quaking aspen (Populus tremuloides Michx.) regenerates primarily by root suckers after disturbances such as low to moderate severity fires. Planting aspen seedlings grown from seed may provide a mechanism to improve restoration success and genetic diversity on severely disturbed sites. However, few studies have examined the use of container-grown aspen seedlings for restoration purposes from both the outplanting and nursery production perspective. Thus, the purpose of this novel study was to examine how alterations in irrigation levels during nursery production across three seed sources would impact seedling performance attributes on harsh, dry outplanting sites. Irrigation …

Patterns For Populus Spp. Stand Biomass In Gradients Of Winter Temperature And Precipitation Of Eurasia, Vladimir Andreevich Usoltev, Baozhang Chen, Seyed Omid Reza Shobairi, Ivan Stepanovich Tsepordey, Viktor Petrovich Chasovskikh, Shoaib Ahmad Anees

Aspen Bibliography

Based on a generated database of 413 sample plots, with definitions of stand biomass of the genus Populus spp. in Eurasia, from France to Japan and southern China, statistically significant changes in the structure of forest stand biomass were found, with shifts in winter temperatures and average annual precipitation. When analyzing the reaction of the structure of the biomass of the genus Populus to temperature and precipitation in their transcontinental gradients, a clearly expressed positive relationship of all components of the biomass with the temperature in January is visible. Their relationship with precipitation is less clear; in warm climate zones, …

Quantitative Trait Loci Analysis Of A Ril Soybean Population To Determine Chromosomal Regions Governing Seed Protein, Oil, And Linolenic Acid Content, Ronald E. Moore

Masters Theses

180 RILs (recombinant inbred lines) segregating for protein, oil, and fatty acids were produced from a cross between TN12-4098 and TN13-4303. These lines were grown across three locations spread horizontally across Tennessee: Research Education Center at Milan (RECM), Highland Rim Research and Education Center (HRREC), and East Tennessee Research and Education Center (ETREC) in 2018 and 2019. 21 quantitative trait loci (QTLs) spanning 7 chromosomes were found using WinQTLCart2.5.

Aspen Next Generation: Conversations From Southern Colorado And Northern New Mexico, Dan Binkley, Bill Romme

Aspen Bibliography

Aspen trees and forests are especially important in the Rocky Mountains. Aspens add beauty to landscapes, foster high diversity and productivity of understory plants, provide for the habitat needs of many species of animals, and moderate fire behavior. There is a perception that aspen trees and stands are not regenerating well in southern Colorado and northern New Mexico; cohorts of trees younger than a few decades are scarce, at least in some areas. The next generation of aspen in the southern Rockies will be influenced by land use decisions, including harvesting, fire policy and management, and browsing by livestock and …

Genomic Insights Into Speciation History And Local Adaptation Of An Alpine Aspen In The Qinghai–Tibet Plateau And Adjacent Highlands, Jia-Lang Li, Lin-Ling Zhong, Jing Wang, Tao Ma, Kang-Shan Mao, Lei Zhang

Aspen Bibliography

Natural selection serves as an important agent to drive and maintain interspecific divergence. Populus rotundifolia Griff. is an alpine aspen species that mainly occurs in the Qinghai–Tibet Plateau (QTP) and adjacent highlands, whereas its sister species, P. davidiana Dode, is distributed across southwest and central to northeast China in much lower altitude regions. In this study, we collected genome resequencing data of 53 P. rotundifolia and 42 P. davidiana individuals across their natural distribution regions. Our population genomic data suggest that the two species are well delimitated in the allopatric regions, but with hybrid zones in their adjacent region in …

Long-Term Soil Productivity Study: 25-Year Vegetation Response To Varying Degrees Of Disturbance In Aspen-Dominated Forest Spanning The Upper Lake States, Miranda T. Curzon, Brian J. Palik, Anthony W. D'Amato, Julia Schwager

Aspen Bibliography

Installations of the Long-Term Soil Productivity Study were established in northern Minnesota and Michigan at the Chippewa, Ottawa, and Huron-Manistee National Forests (NFs) in the early 1990s and have since provided a wealth of data for assessing the response of aspen-dominated forest ecosystems to varying levels of organic matter removal and soil compaction. An assessment of 25-year standing woody biomass indicates that neither whole-tree harvest nor whole-tree harvest combined with forest floor removal reduced forest productivity on silt-loam soils compared with conventional, stem-only harvest; however, moderate and heavy compaction did negatively impact aspen biomass and stem densities. In contrast, whole-tree …

Investigation Of The Individual Soybean Root Nodule Microbiome, Parris Mica Mayhood

MSU Graduate Theses

Soybean is a valuable crop that establishes a symbiotic association with nitrogen-fixing microorganisms. Previous research suggests members of the genus Bradyrhizobium are the major nitrogen-fixing inhabitants of soybean root nodules. However, results from recent studies identified the presence of other bacteria, so called non-rhizobial endophytes (NREs), inside root nodules. All previous research has pooled nodules of different plants for bacterial community analysis, but this study investigated the presence and relative abundance of rhizobia and NREs within multiple root nodules of a single plant. Three sites were selected on Kendrick Farm in Springfield, MO, where three plants and rhizosphere soil were …

Diversity, Function And Regulation Of Cell Surface And Intracellular Immune Receptors In Solanaceae, Jong Hum Kim, Christian Castroverde

Biology Faculty Publications

The first layer of the plant immune system comprises plasma membrane-localized receptor proteins and intracellular receptors of the nucleotide-binding leucine-rich repeat protein superfamily. Together, these immune receptors act as a network of surveillance machines in recognizing extracellular and intracellular pathogen invasion-derived molecules, ranging from conserved structural epitopes to virulence-promoting effectors. Successful pathogen recognition leads to physiological and molecular changes in the host plants, which are critical for counteracting and defending against biotic attack. A breadth of significant insights and conceptual advances have been derived from decades of research in various model plant species regarding the structural complexity, functional diversity and …

Genetic Parameters Of Growth And Adaptive Traits In Aspen (Populus Tremuloides): Implications For Tree Breeding In A Warming World, Chen Ding, Andreas Hamann, Rong-Cai Yang, Jean S. Brouard

Aspen Bibliography

Aspen (Populus tremuloides Michx) is a widespread commercial forest tree of high economic importance in western Canada and has been subject to tree improvement efforts over the past two decades. Such improvement programs rely on accurate estimates of the genetic gain in growth traits and correlated response in adaptive traits that are important for forest health. Here, we estimated genetic parameters in 10 progeny trials containing >30,000 trees with pedigree structures based on a partial factorial mating design that includes 60 half-sibs, 100 full-sib families and 1,400 clonally replicated genotypes. Estimated narrow-sense and broad-sense heritabilities were low for height …

Contrasting Root System Structure And Belowground Interactions Between Black Spruce (Picea Mariana (Mill.) B.S.P) And Trembling Aspen (Populus Tremuloides Michx) In Boreal Mixedwoods Of Eastern Canada, Claudele Ghotsa Mekontchou, Daniel Houle, Yves Bergeron, Igor Drobyshev

Aspen Bibliography

This study explored the underground interactions between black spruce and trembling aspen in pure and mixed stands to understand how their soil resource use help these species coexist in the boreal mixedwoods of Western Quebec. We analyzed species-specific fine root foraging strategies (root biomass and root tissue density) along three soil layers (organic, top 0–15 cm, and bottom 15–30 cm mineral soil), using 180 soil cores. We collected cores in three sites, each containing three 20 × 50 m2 plots of pure spruce, pure aspen, and mixed spruce and aspen stands. Spruce had a shallow rooting, whereas aspen had a …

Genome-Wide Transcriptome And Physiological Analyses Provide New Insights Into Peanut Drought Response Mechanisms, Sailaja Bhogireddy, Abishek Xavier, International Crops Research Institute For The Semi-Arid Tropics (Icrisat), Hyderabad, India, Nancy Layland, Renee Arias, Paxton Payton, Spurthi N. Nayak, Manish K. Pandey, Naveen Puppala, Rajeev K. Varshney

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Drought is one of the main constraints in peanut production in West Texas and eastern New Mexico regions due to the depletion of groundwater. A multi-seasonal phenotypic analysis of 10 peanut genotypes revealed C76-16 (C-76) and Valencia-C (Val-C) as the best and poor performers under deficit irrigation (DI) in West Texas, respectively. In order to decipher transcriptome changes under DI, RNAseq was performed in C-76 and Val-C. Approximately 369 million raw reads were generated from 12 different libraries of two genotypes subjected to fully irrigated (FI) and DI conditions, of which ~329 million (90.2%) filtered reads were mapped to the …

Rapid Evolution In Agroecosystems: Transposable Elements And Epigenetics In The Colorado Potato Beetle, Kristian Brevik

Graduate College Dissertations and Theses

Within agricultural ecosystems, humans and insects enter into complex relationships. Humans consider many of these insects to be pests, and exert significant pressures upon them, such as efforts to kill them using insecticides. One of the ways insects respond to these efforts is by rapidly evolving resistance to insecticides - but how they do this is not fully understood. DNA methylation, an epigenetic mechanism, and transposable elements, which are mobile genetic elements within genomes, may each play a role in shaping the way insects rapidly evolve in response to exposure to insecticides. Understanding the role of transposable elements and DNA …

Geographic Distribution Of Bacillus Thuringiensis Cry1f Toxin Resistance In Western Bean Cutworm (Lepidoptera: Noctuidae) Populations In The United States, Brad S. Coates, Craig A. Abel, Katharine A. Swoboda-Bhattarai, Debra E. Palmquist, Débora Goulart Montezano, Sarah N. Zukoff, Yangzhou Wang, Jeffery D. Bradshaw, Christina D. Difonzo, Elson Shields, Kelley J. Tilmon, Thomas Hunt, Julie A. Peterson

West Central Research and Extension Center, North Platte

The western bean cutworm (WBC), Striacosta albicosta (Lepidoptera: Noctuidae), can be a severe pest of transgenic corn in the western Plains and Great Lakes regions of North America, including on hybrids expressing the Bacillus thuringiensis (Bt) Cry1F toxin. The level and geographic distribution of Cry1F resistance are not completely known. Neonate S. albicosta from 10 locations between Nebraska and New York state were subjected to dose–response trypsin-activated native Cry1F toxin overlay bioassays. In 2017, the mean estimated lethal concentration causing 50% larval mortality (LC50) ranged from 15.1 to 18.4 μg Cry1F cm−2, and were not significantly different among locations. In …

The Potential Of Refugee Seed Systems To Promote Contemporary Adaptation In Traditional Crops: A Case Study Of African Maize In New England, Andi Kur

Graduate College Dissertations and Theses

There are many mechanisms by which landraces evolve in a contemporary agricultural setting; however, the influence of forced human migration on landrace redistribution and evolution has received little attention in comparison to the stochastic effects of drift, mutation, and gene flow in the centers of origin. Although the seed systems of forcedly-displaced people remain poorly understood, evidence suggests that refugees often continue to grow traditional crops after resettlement. From a genetics perspective, the crops that are transported to highly disparate environments provide an interesting opportunity to study adaptation.

This research addresses how forced human migration has impacted contemporary landrace evolution …

Full Issue-- Volume 3 Issue 1, 2020, Issue 1 Volume 3

Pursue: Undergraduate Research Journal

PURSUE: Undergraduate Research Journal

Volume 3 Issue 1, 2020

Article 1 - Harvesting Electrical Energy Produced by Electrogenic Bacteria in Microbial Fuel Cells

Article 2 – The Effects of Fertilizer Rate on the Growth of Egyptian Spinach in a Greenhouse

Article 3 – Exploring the Association Between Nutrition and Mental Health in Adolescence: A Systematic Literature Review

Article 4— Biological Pathways Associated with Wild and Domestic Animals

Pando Clone Recovery: Repeat Photos 2014-2019, Mary O'Brien, Marc Coles-Ritchie

Aspen Bibliography

The world's largest known clone of aspen (Populus tremuloides), called the "Pando Clone" is located in the Fishlake National Forest in central Utah. For many decades, significant pressure from ungulate (deer and cattle) browsing has prevented growth of young aspen stems in to trees that would replace the mature trees as they die of natural causes. There has been concern that this impressive 104-acre Pando Clone could be lost altogether due to the excessive browsing of young aspen stems. In 2013, 16 acres of this clone were fenced to exclude all ungulates (deer and cattle) so that recovery …

Patterns Of Epiphytic Lichen Abundance On Aspen Stands In Proximity To Roads Of Varying Vehicular Traffic, D. Aragon, C. Castillo, J. Moffroid, G. Thomas

Aspen Bibliography

Although present in nearly any wild space with available moisture and on a wide variety of substrates, lichen, and its importance as a bioindicator for an ecosystem, is often overlooked. As air pollution becomes a greater concern for flora, fauna, and even humans, the story told by lichen growth becomes more useful as we try to make sense of the downstream effects of anthropogenic contributions to poor air quality. One such human-driven pollutant is the level of emissions that result from vehicular travel. The Jackson Hole area has experienced a large increase in vehicular traffic in the past five to …

Identification And Characterization Of Epigenetic Regulators In The Yellow Fever Mosquito, Aedes Aegypti, Shankar C. R. R. Chereddy

Theses and Dissertations--Entomology

Due to the increased interactions between the sylvatic and urban cycles of Aedes aegypti life cycle, there has been an increase in the incidence of vector-borne diseases. The risk involved through the transmission of viruses like Dengue, Zika, Yellow-fever and Chikungunya calls for an effective control method for the deadly vector. The possibility of pesticide resistance and the costs involved in producing new pesticides have pushed Sterile Insect Technique (SIT) into prominence. However, current methods used to sterize insects for SIT are not highly efficient. This study tackles current issues in mosquito control by identifying and characterizing epigenetic regulators that …