Ecology and Evolutionary Biology Commons^™

The Interrelationships Of Placental Mammals And The Limits Of Phylogenetic Inference, James E. Tarver, Mario Dos Reis, Siavash Mirarab, Raymond J. J. Moran, Sean Parker, Joseph E. O'Reilly, Benjamin L. King, Mary J. O'Connell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue, Davide Pisani

Dartmouth Scholarship

Placental mammals comprise three principal clades: Afrotheria (e.g., elephants and tenrecs), Xenarthra (e.g., armadillos and sloths), and Boreoeutheria (all other placental mammals), the relationships among which are the subject of controversy and a touchstone for debate on the limits of phylogenetic inference. Previous analyses have found support for all three hypotheses, leading some to conclude that this phylogenetic problem might be impossible to resolve due to the compounded effects of incomplete lineage sorting (ILS) and a rapid radiation. Here we show, using a genome scale nucleotide data set, microRNAs, and the reanalysis of the three largest previously published amino acid …

The Evolution Of Kin Recognition, Timothy Ja Hain

Electronic Thesis and Dissertation Repository

The discovery that many animals are promiscuous has challenged the importance of Hamilton’s Rule because it reduces the net benefits of helping nestmates. To resolve this challenge, biologists have investigated animals’ abilities to determine degrees of relatedness among individuals using kin recognition mechanisms. I conducted a literature review and found that most animals use one of two mechanisms: “familiarity” whereby kin are remembered from interactions early in life, such as in a nest, or “phenotype matching” whereby putative kin are compared to a template of what kin should look, smell, or sound like based on relatives encountered during early life …

A New Adaptive Landscape: Urbanization As A Strong Evolutionary Force, Lauren Christie Breza

Masters Theses

Urbanization is rapidly increasing as human population growth steadily grows, but there is little consensus of the ecological consequence of this population shift and almost no information of the evolutionary consequences for local biodiversity. Nearly two-thirds of the world’s population will live in city centers by 2050 with profound impacts on landscapes that can act as important agents of selection. This study aims to identify 1) the net effect of urbanization on species richness, 2) how phylogenetic diversity varies between urban and rural sites, and 3) the strength of urbanization as a selection pressure. First, a meta-analysis was conducted in …

Evolution Practice 2, Imsa Biology Team

Evolution

Evolution Problems

Genetic Drift Simulation, Imsa Biology Team

Evolution

Genetic drift can be defined as a random fluctuation in gene frequency. More specifically, it tells us that different alleles may increase or decrease in a population in proportion to one another over time, just by chance, rather than due to any fitness advantage.

Mechanisms And Speciation 2: Evolution On The Web Questions, Imsa Biology Team

Evolution

The website below, sponsored by UC Berkeley, is a reliable source for information about evolution. This will give you the introductory information about the mechanisms of Evolution.

Mechanisms And Speciation 1: The Modern Synthesis, Imsa Biology Team

Evolution

The Modern Synthesis or Synthetic Theory of Evolution is an explanation of evolution that is based on modern genetic principles. According to the Modern Synthesis (a.k.a. Neo-Darwinism):

Evidence Of Evolution 2: Definitions For Evolutionary Evidence Lab, Imsa Biology Team

Evolution

This lab activity was designed to provide you with opportunities to make inferences and draw conclusions about evolution and the common ancestry of various animals based on their anatomical characteristics and comparative anatomy. You will be given tasks to accomplish or questions to answer at each of 11 stations. In order to do this successfully, you must make careful observations of the specimens on display. You must also know the following definitions before beginning this activity:

Evolution Practice 1, Imsa Biology Team

Evolution

Answer the following questions using information from the handouts, and examples from the LAB

Evidence Of Evolution 1: Structures, Imsa Biology Team

Evolution

In order to investigate linage, evolutionary history, and common ancestry, you need to be familiar with the following structures.

Essential Questions, Imsa Biology Team

Evolution

In order to understand the current state of biological life and how it has changed over time, the following questions must be addressed:

Evidence Of Evolution 3: Evolutionary Evidence And Inferences Lab: A Discussion Guide, Imsa Biology Team

Evolution

This lab activity was designed to provide you with opportunities to make inferences and draw conclusions about evolution and the common ancestry of various animals based on their anatomical characteristics and comparative anatomy. You will be given tasks to accomplish or questions to answer at each of 11 stations. In order to do this successfully, you must make careful observations of the specimens on display.

Is Your Learning Style Paranoid?, Kirby Farrell

kirby farrell

We learn—and grow—by engaging with anomalies: new things that don't fit our familiar categories. It's a gut process, not just a philosophical choice. Anxiety can make us paranoid about what's new and strange. Knowing that can spur fascination and help us to adapt.

An Exploration Of The Phylogenetic Placement Of Recently Discovered Ultrasmall Archaeal Lineages, Jeffrey M. O'Brien

Honors Scholar Theses

In recent years, several new clades within the domain Achaea have been discovered. This is due in part to microbiological sampling of novel environments, and the increasing ability to detect and sequence uncultivable organisms through metagenomic analysis. These organisms share certain features, such as small cell size and streamlined genomes. Reduction in genome size can present difficulties to phylogenetic reconstruction programs. Since there is less genetic data to work with, these organisms often have missing genes in concatenated multiple sequence alignments. Evolutionary Biologists have not reached a consensus on the placement of these lineages in the archaeal evolutionary tree. There …

Evolution And Otitis Media: A Review, And A Model To Explain High Prevalence In Indigenous Populations, Mahmood F. Bhutta

Human Biology Open Access Pre-Prints

Inflammation of the middle ear (otitis media) comprises a group of disorders that are highly prevalent in childhood, and indeed are amongst the most common disorders of childhood. Otitis media is also heritable, and has effects on fecundity. This means that otitis media is subject to evolution, yet the evolutionary selection forces that may determine susceptibility to otitis media have never been adequately explored.

Here I undertake a critical analysis of evolutionary forces that may determine susceptibility to middle ear inflammation. These forces include those determining function of the middle ear, those affecting host immunity, and those affecting colonization by, …

The Evolutionary History Of Cetacean Brain And Body Size, Stephen H. Montgomery, Jonathan H. Geisler, Michael R. Mcgowen, Charlotte Fox, Lori Marino, John Gatesy

Lori Marino, PhD

Cetaceans rival primates in brain size relative to body size and include species with the largest brains and biggest bodies to have ever evolved. Cetaceans are remarkably diverse, varying in both phenotypes by several orders of magnitude, with notable differences between the two extant suborders, Mysticeti and Odontoceti.We analyzed the evolutionary history of brain and body mass, and relative brain size measured by the encephalization quotient (EQ), using a data set of extinct and extant taxa to capture temporal variation in the mode and direction of evolution. Our results suggest that cetacean brain and body mass evolved under strong directional …

The Evolution Of Body Size In The Order Siluriformes, D Cooper Campbell

Honors Theses

The evolution of body size has long been a topic of interest to biologists due to the close link between size and various aspects of an organism’s biology. Adult body size is influenced by the underlying tradeoff in energy allocation between maintenance, somatic growth and reproduction. I studied the evolution of a large group of globally distributed (primarily freshwater with some marine forms) fishes to test some basic hypotheses about the evolution of adult body size. Catfish (Siluriformes) are an excellent group for this type of research as they represent approximately 11% of fishes and species range in size from …

Some Agreement On Kin Selection And Eusociality?, David C. Queller, Stephen Rong, Xiaoyun Liao

Biology Faculty Publications & Presentations

The authors of "Relatedness, Conflict, and the Evolution of Eusociality" respond to objections raised by Martin Nowak and Benjamin Allen.

Evolution And Biodiversity, Timothy Henkel, Emily Croteau, Matthew Waters

Biological Sciences Grants Collections

This Grants Collection for Evolution and Biodiversity was created under a Round Four ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Relatedness, Conflict, And The Evolution Of Eusociality, Xiaoyun Liao, Stephen Rong, David C. Queller

Biology Faculty Publications & Presentations

The evolution of sterile worker castes in eusocial insects was a major problem in evolutionary theory until Hamilton developed a method called inclusive fitness. He used it to show that sterile castes could evolve via kin selection, in which a gene for altruistic sterility is favored when the altruism sufficiently benefits relatives carrying the gene. Inclusive fitness theory is well supported empirically and has been applied to many other areas, but a recent paper argued that the general method of inclusive fitness was wrong and advocated an alternative population genetic method. The claim of these authors was bolstered by a …

The Influence Of Spines And Size Refuge On Predation Of Devonian Brachiopods From The Lime Creek Formation Near Rockford, Iowa, Broc S. Kokesh

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

Brachiopods are small invertebrates that live on the seafloor and are prominent in the fossil record from 540 to 250 million years ago. An interesting feature of some species is that large spines develop on their exterior surfaces. These spines are thought to have evolved for defense against predators, but fossils are limited in how much information they contain about how organisms interact with each other. In this study, I examined wound markings on fossils of both a spiny (Atrypa rockfordensis) and spineless (Atrypa devoniana) species of brachiopod. Results show that spiny brachiopods were less frequently …

Life History Evolution And Adaptive Radiation Of Hemidactyliine Salamanders, Travis Ryan, R. Bruce

Travis J. Ryan

T.J. Ryan and R.C. Bruce's contribution to: The Biology of Plethodontid Salamanders, R. C. Bruce, R. G. Jaeger, and L. D. Houck, eds. Kluwer Academic/Plenum Publishers, New York.

The Relationship Of Female Physical Attractiveness To Body Fatness, Guanlin Wang, Kurosh Djafarian, Chima A. Egedigwe, Asmaa El Hamdouchi, Robert Ojiambo, Harris Ramuth, Sandra Johanna Wallner-Liebmann, Sonja Lackner, Adama Diouf, Justina Sauciuvenaite, Catherine Hambly, Lobke M. Vaanholt, Mark D. Faries, John R. Speakman

Faculty Publications

Aspects of the female body may be attractive because they signal evolutionary fitness. Greater body fatness might reflect greater potential to survive famines, but individuals carrying larger fat stores may have poor health and lower fertility in non-famine conditions. A mathematical statistical model using epidemiological data linking fatness to fitness traits, predicted a peaked relationship between fatness and attractiveness (maximum at body mass index (BMI) = 22.8 to 24.8 depending on ethnicity and assumptions). Participants from three Caucasian populations (Austria, Lithuania and the UK), three Asian populations (China, Iran and Mauritius) and four African populations (Kenya, Morocco, Nigeria and Senegal) …