Ecology and Evolutionary Biology Commons^™

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Angela Mcdonnell, Edeline Gagnon, Rebecca Hilgenhof, Andres Orejuela, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvea, Thamyris Bragionis, Joao Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher Martine, Peter Poczai, Sandra Knapp, Tiina Sarkinen

Biology Faculty Publications

Premise
Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods
A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) and nine regions …