Ecology and Evolutionary Biology Commons^™

Regeneration Response To Salvage Logging Following Tornado Disturbance, Colby K. Bosley-Smith

Electronic Theses and Dissertations

In an era of increasing natural disturbances, successful tree regeneration has grown more difficult to achieve. Salvage logging, a common management response to disturbance, may further impede regeneration success, although published literature currently remains inconclusive. In 2013, a rare tornado in northcentral Maine, USA, and subsequent salvage operation created three clear ‘treatments’ for evaluation of post-disturbance regeneration: blowdown, blowdown followed by salvage logging and an undisturbed control. In the summers of 2022 and 2023, (nine and ten) years post-tornado, we revisited this site to examine regeneration outcomes.

During the summer of 2022, we evaluated stand structure and regeneration success of …

Assessing The Role Of The Microbiome, Parasite Infections, And Movement In Avian Health, Olivia N. Choi

Electronic Theses and Dissertations

Avian health encompasses the physical, physiological, and behavioral well-being of birds. Assessing avian health is not only important for the conservation and management of wild birds and the recreational economy, but also for the management of infectious diseases that threaten public health and agriculture. Birds, comprising approximately 10,000 species and an estimated 50 billion individuals worldwide, are known to be involved in the spread of pathogens, some of which are zoonotic (from animals to humans), such as avian influenza and West Nile viruses. Individual measures of avian health may include physical measurements (e.g., body mass, wing length), pathogen infection status, …

Integrating Environmental Dna, Traditional Fisheries Techniques, And Species Distribution Modeling To Assess Bridle Shiner Status In Maine, Lara S. Katz

Electronic Theses and Dissertations

The bridle shiner (Notropis bifrenatus) is a small minnow species native to the eastern United States and southeastern Canada. The species is declining dramatically throughout most of its native range and has legal protection or concern status in thirteen states and two Canadian provinces. In Maine, the bridle shiner is listed as a Species of Special Concern and considered a Species of Greatest Conservation Need, partially because we lack a basic understanding of their status and distribution within the state. Bridle shiners have historically been found in southern and western Maine in densely vegetated, shallow habitats along the …

Climate Interactions Drive Tree Physiology And Growth In A Northeastern Forest Ecotone, Alexandra M. Barry

Electronic Theses and Dissertations

Climate change is a threat to global forest ecosystems. In the northeastern United States, forest trees are facing rising temperatures and increasingly inconsistent moisture regimes. In addition to long-term changes in climate conditions, there is concern about the potential for more frequent and intense climate extremes, which can have severe and rapid negative effects on tree physiology and growth. Further, climate extremes may co-occur to produce a greater magnitude of effect than the sum of their parts, with a prominent example being hot droughts, which are increasing in occurrence and severity. The impact of these and other extreme climate interactions …

Effects Of Large Wood Additions On Basal Resources, Macroinvertebrates, And Ecosystem Processes In The Narraguagus River, Maine, Val Watson

Electronic Theses and Dissertations

Ecological restoration is an increasingly common practice across ecosystems, and current practices aim to restore the biological and physical processes underlying ecosystem function, often for the sake of endangered higher-level consumers. Studies of restoration outcomes often report few or inconsistent ecological changes, and monitoring of restoration projects rarely measures ecological processes. Monitoring also usually measures outcomes at a single scale, despite the prevalence of scale- dependent phenomena across ecosystems. My thesis uses measurements of ecological processes to assess restoration response and evaluates responses across multiple scales. I focus here on a long-term large wood addition project on the Narraguagus River …

Genetic Effects Of Anthropogenic Disturbance On Native Charrs, Brad Erdman

Electronic Theses and Dissertations

Artificial propagation has been utilized for over a century to offset anthropogenic declines of abundance for many fishes. Complex and poorly documented histories of habitat degradation and stockings have resulted in considerable uncertainty regarding whether contemporary populations are of native, hatchery, or mixed origins. This uncertainty is problematic as it precludes prioritizing the conservation of native populations that are postulated to possess local adaptations and greater evolutionary potential. Population genetics can assess the relative reproductive contributions of previous stocking events and in this dissertation I apply these methods to four empirical studies of native charr (genus Salvelinus) that have …

Comparative Energetics Of Mammalian Thermoregulatory Physiology, Ana M. Breit

Electronic Theses and Dissertations

Endothermy allows species to decouple body temperature from environmental
temperatures but does not equate to endothermic species maintaining those constant temperatures. Instead, heterothermy fluctuating body temperatures, both in and outside of torpor is common and allows endotherms to expand the limits of thermoneutrality. Thermolability is likely to be more common in the tropics and subtropics, where species live within or above their thermoneutral zone. My dissertation research focused on the heterothermic-homeothermic continuum, specifically quantifying where on the continuum different species fall at certain times and why those species have evolved to be at those points. I quantified the thermal profile …

Optimizing Strategies To Hydraulically Plant Atlantic Salmon Eggs Based On Fry Dispersal Patterns, Ernest J. Atkinson

Electronic Theses and Dissertations

The Gulf of Maine Distinct Population Segment of Atlantic Salmon has suffered from habitat loss and exploitation over the last century. Hatchery supplementation has prevented the extirpation of the species, but stocking methods represent tradeoffs between survival, domestication, and logistics. Egg planting, the use of eyed embryos, maximizes natural rearing opportunities which can be important for adaptation. This method, however, is logistically demanding and requires significant labor over large spatial, but short temporal, scales dictated by the ontogeny of the fish. However, the survival and dispersal behavior of Atlantic Salmon fry immediately after emergence from eggs planted in artificial nests …

Understanding The Impacts Of Anthropogenic Effects An Habitat Variability Interactions On Maine's Rocky Intertidal Ecosystem, Laura Braun

Electronic Theses and Dissertations

The rocky intertidal ecosystem is an important ecological and cultural aspect of the picturesque Maine coast, playing a vital role in not only Maine’s coastal ecosystem, but also to Maine’s economy. It’s distinct community structure along the sharp elevational gradient and the presence of daily stressors (wave action, heat, and desiccation), make the rocky intertidal ecosystem an important model ecosystem to monitor for effects from anthropogenic impacts. In this thesis, I describe attempts to monitor and understand the impacts of two of these anthropogenic impacts on this system: climate change and industrial harvesting of Ascophyllum nodosum along Maine’s coast. For …

Quantitative Silviculture Of Northern Conifers, David G. Ray

Electronic Theses and Dissertations

Quantitative tools used to guide the management of important northern conifer species require updating and refinement to address changes in the contemporary resource and evolving objectives of ownership. This work builds on an extensive body of knowledge about stand density management and innovates some new approaches. In sum, the three chapters presented herein: 1) seek to strengthen and more fully articulate arguments for adopting relative density as a primary metric of stand density assessment, 2) quantify minimum stand densities to achieve full site occupancy and argue for more parity with treatment of maximum stand density, and 3) present an empirically …

Carbon Dioxide Emissions From Deadwood In Forests Of The Northeastern United States, Zoe Read

Electronic Theses and Dissertations

As the climate changes, understanding the sources and sinks of greenhouse gases such as carbon dioxide (CO₂) is increasingly important. However, several components of the carbon cycle within forests remain poorly understood. For example, knowledge gaps exist in our understanding of CO₂ emissions from coarse woody material (CWM; logs and stumps), including how emissions change over time, how they are influenced by environmental variables, and how they compare to soil and ecosystem-level CO₂ emissions.

To fill these knowledge gaps, we examined CO₂ emissions from CWM at three sites. We sampled 18 red spruce (Picea …

A Sky Island Perspective: New England Alpine Plant Distributions Across The Region, Andrea Tirrell

Electronic Theses and Dissertations

Alpine ecosystems around the globe are at risk due to climate change, human disturbance, and habitat loss. New England alpine zones are small and fragmented, which could make them vulnerable to global change. However, the persistence of tundra relics throughout the Holocene suggests the persistence of these communities in microclimate refugia. Assessing the near-term vulnerability of alpine plant communities is challenged by a lack of standardized, repeat surveys and long-term monitoring data, which presents a challenge for the many agencies monitoring New England’s alpine zones. Island biogeography theory predicts that alpine species richness is a function of area, but this …

Ecological Implications Of Intraspecific Behavioral Variation In A Small Mammal Community, Allison Brehm

Electronic Theses and Dissertations

Variation among individuals is at the root of all evolution by means of natural selection. However, only in recent years has intraspecific behavioral variation been embraced as a potential driver of community and ecosystem processes, rather than considered statistical noise. Animal personalities, or behavioral differences between conspecifics that are consistent across time and contexts, are one such form of variation that has received considerable attention in the last two decades. Investigations of the ecological and ecosystem consequences of personality variation is at the current forefront of the field, but much work on this topic remains conceptual. Here, I apply large-scale …

3d Computer Modeling Offers New Insights Into Diatom Ecology, Joseph Mohan

Electronic Theses and Dissertations

Algae supply over half of the Earth’s global primary production and form the base of almost all aquatic food networks. Thus, changes in algal productivity or composition will induce profound shifts in many ecosystems. This research is guided by two questions. Herein I ask if 3D models of algae can be created accurately enough to use for research applications? If they can be accurately created, then how can these models be used to advance our understanding of functional trait evolution and paleoecology? Herein, I develop 3D computer models for estimating the volume of individual algae and their parts. I also …

Evaluation Of Fish Assemblage Composition And The Expansion Of An Invasive Species Following Dam Removal And Upgraded Fish Passage In The Penobscot River, Maine, Kory A. Whittum

Electronic Theses and Dissertations

The Penobscot River Restoration Project was a large river rehabilitation project, culminating in the removal of the two lowermost dams (Veazie and Great Works) and improvements to fish passage on several remaining dams. Fish assemblages were surveyed for 3 years prior to rehabilitation, 3 years after, and now 8 years post-rehabilitation. Approximately 475 km of shoreline was sampled via boat electrofishing, yielding 133,394 individual fish of 41 species. The greatest shifts in assemblage structure occurred immediately after dam removal in formerly impounded sections, with increased prevalence of riverine and migratory species. Extended sampling documented several additional changes occurring within lower …

The Long-Term Impact Of Dam Removals On Penobscot River Migratory Fishes, Erin Peterson

Electronic Theses and Dissertations

Dams interrupt river connectivity and disrupt fish migrations. We used telemetry to study the migratory movement patterns of adult American shad, sea lamprey, and Atlantic salmon on the Penobscot River, Maine after dam removals and other passage improvements had occurred. We also studied scale formation of marine-stage Atlantic salmon raised in marine net pens, the findings from which could be relevant to captive rearing efforts.

American shad now have access to the majority of their historic spawning habitat, contingent on passage the first main-stem dam (Milford Dam). We found that habitat upstream of dams was infrequently accessed, and first …

Evaluating Physical And Cultural Methods To Improve Weed Management In Organic Vegetables, Rebecca J. Champagne

Electronic Theses and Dissertations

Effectively managing weeds in organic vegetable production continues to be challenging and costly. Cultivation, often referred to as physical weed control (PWC), is foundational for organic farmers; however, efficacy tends to be low and highly variable. Additionally, some crops are slow to germinate, and thus have poor competitive ability against weeds and high mortality from cultivation. This can result in high costs for hand-weeding labor, abundant seed rain into the soil, and a recurring, often increasing, weed problem. These challenges may be addressed by “stacking” tools to increase weed control efficacy, integrating targeted seedbank management strategies to reduce the germinable …

Rusty Blackbird Use Of Commercial Spruce-Fir Forests Of Northern New England, Luke M. Douglas

Electronic Theses and Dissertations

The Rusty Blackbird (Euphagus carolinus) has experienced a steep population decline since the 1970s, with qualitative accounts suggesting that the species’ numbers have been falling prior to the 1950s. The reason for this decline is still not fully understood, though recent work suggests that habitat destruction and disturbance in the breeding and wintering ranges are likely causes. The species is a habitat specialist that relies on spruce-fir stands located near wetlands for breeding in the boreal and Acadian forests of North America. Historically, the natural disturbance regime in the Acadian region included biotic agents such as beaver and …

The Organizational Evolution Of Small Food Buying Clubs, Taylor Lange

Electronic Theses and Dissertations

Organizations are pervasive in modern society and the factors of their evolution are the subject of considerable scholarship. Most literature on organizational evolution focuses on the role of leaders and entrepreneurs, specifically their decision making interacts with market forces. However, the behavior and interactions of regular organization members, such as nonmanagerial employees or club members, is surprisingly overlooked. Specifically, examinations of social dilemmas between co-workers and the role of learning are often discounted in the current literature. This dissertation explores how the dynamics of cooperation and the learning of preferences as cultural traits become consequential in the evolution and longevity …

Assessing The Long-Term Effects Of Natural Disturbance-Based Silvicultural On The Avian Assemblage At The Acadian Forest Ecosystem Research Program, Carl Pohlman

Electronic Theses and Dissertations

Active forest management alters the resources available to forest-obligate species. Large-scale intensive management practices where timber production is the primary objective can lead to notable ecological changes in forest ecosystems. A key concept of ecological forestry is to design forest management activities to emulate natural disturbance regimes as a way to maintain the ecological integrity of forests. The Acadian Forest Ecosystem Research Program (AFERP) was undertaken as an experimental demonstration of management reflective of the region’s disturbance regime, which typically produces small canopy gaps. AFERP includes nine research areas assigned to three silvicultural treatments: unharvested control, small gap (expanding-group selection …

Retroviral Infection Dynamics In Maine's Wild Turkeys, Stephanie A. Shea

Electronic Theses and Dissertations

Widespread wild turkey reintroductions in the late 1900s have led to increases in population density and geographic distribution across North America. This rapid population expansion has put them into proximity with closely-related wild and domestic avian species, increasing the risks of pathogen transmission. Lymphoproliferative disease virus (LPDV) is an avian oncogenic retrovirus detected in wild turkeys in 2009, and previously known to infect domestic turkeys. Following its initial detection, surveys reported variable LPDV prevalence across eastern North America with most wild turkeys being asymptomatic, however diagnostic cases revealed 10% mortality of LPDV-infected individuals. Given its recent detection, little is known …

Biotic Interactions At Species’ Range Limits In A Changing Climate, Isaac Shepard

Electronic Theses and Dissertations

As the global climate changes, many species are shifting their geographic ranges, often towards the poles or upslope in elevation. The ubiquity of these observation has renewed discussions about the mechanisms that determine species’ range margins. Leading hypotheses state abiotic variables should be the most important factor for setting range limits in environmentally stressful habitats. However, I propose an alternative hypothesis that biotic interactions may still be critically important for setting range limits, even in abiotically stressful habitats. Using a model system of ponds in the Rocky Mountains of Colorado, I developed several field experiments to empirically test the role …

Cumulative Effects Of Habitat Change: American Marten Habitat Selection And 30 Years Of Forest Harvesting In Maine, Tyler Woollard

Electronic Theses and Dissertations

Wildlife habitat conservation in landscapes where human activities cause chronic habitat disturbance is contingent upon developing land management strategies that minimize the effects of future habitat changes on wildlife populations. Long term studies can provide unique opportunities to understand how species respond to progressive habitat change, and such an understanding can reveal ways in which the often conflicting objectives of wildlife habitat conservation and human land use can be reconciled. Characterizing how animals respond behaviorally to habitat conditions may be a useful tool for identifying potential negative effects of disturbance before such effects impact rates of species occurrence, population demography, …

Whole Genome Sequencing Reveals Genes And Pathways Associated With Anthrax Survivorship In Plains Zebra, Carly Dickson

Electronic Theses and Dissertations

Pathogens are significant selective forces on natural populations, and therefore genes and gene regulators involved with combatting infections experience some of the strongest selection pressures in the vertebrate genome. Studies in humans have used high-throughput next generation sequencing to identify genes associated with infectious diseases, however, these studies have been limited in wildlife systems despite their potential to improve public health, agricultural production, and wildlife conservation. Anthrax is a globally distributed disease caused by the virulent bacterial pathogen Bacillus anthracis, which has significant effects on morbidity and mortality in humans, livestock, and wildlife populations. In this study, we utilize whole …

Forest Disturbance And Occupancy Patterns Of Carnivores: Results Of A Large-Scale Field Study In Maine, Usa, Bryn E. Evans

Electronic Theses and Dissertations

Understanding trends in the abundance and distribution of carnivores is important at global, regional and local scales due to their ecological role, their aesthetic and economic value, and the numerous threats to their populations. Carnivores in Maine range from the American black bear (Ursus americanus), to numerous native mesocarnivore species, such as American marten (Martes americana), fisher (Pekania pennanti), coyote (Canis latrans), red fox (Vulpes vulpes), bobcat (Lynx rufus), Canada lynx (Lynx canadensis) and to two small weasel species (Mustela erminea and Neogale frenata). …

American Woodcock (Scolopax Minor) Migration Ecology In Eastern North America, Alexander Fish

Electronic Theses and Dissertations

Across temperate regions of North America, migrating animals must contend with seasonally influenced thermal extremes, changing food abundance, and stochastic weather events. Migrating individuals must locate suitable areas, termed stopover locations, to rest and rebuild energy reserves needed to continue migration (Rodewald and Brittingham 2004, Taylor et al. 2011). The American Woodcock (Scolopax minor; woodcock hereinafter) is a migratory forest bird that has experienced long-term population declines (Seamans and Rau 2019). We created the Eastern Woodcock Migration Research Cooperative, including 34 provincial, federal, state, and non-governmental partners, with the goal of describing the migration ecology of woodcock in the eastern …

Experimental Warming Effects On Growth, Yield, And Biotic Pressure Of Wild Blueberries In Maine, Yu-Ying Chen

Electronic Theses and Dissertations

As the global temperature rises, a need exists for understanding the potential impacts of warming on the wild blueberry industry in Maine. Warming can change the physiology, growth, and pest pressure of crops, and also accelerates the evapotranspiration rate, resulting in decreased soil moisture. The objectives of this study were: (1) To characterize the response of phenological, morphological, and physiological traits of the wild blueberries to warming; (2) To quantify the impacts of different temperature levels on yield and berry quality; (3) To determine the abiotic and biotic factors that may influence yield, such as winter damages, freezing temperatures, the …

Eastern Wild Turkey Population Ecology Across Land Use Gradients In Maine, Matthew Gonnerman

Electronic Theses and Dissertations

Wild turkeys are a wide-ranging species with considerable cultural and economic significance. As they can exist across a variety of ecosystems, understanding how land use affects population vital rates can be a crucial component of informed population management. This is even more important for turkey populations in Maine, where harsh winters can have negative impacts on survival and reproduction.

I used a combination of banding and tracking data to better understand the relationship between turkey population ecology at their northern range limit and the diverse landscape gradient they occupy in Maine. I produced wildlife management district specific estimates of turkey …

Vertical Habitat Gradients: Comparing Phytoplankton Dynamics In Lakes With Low To Moderate Dissolved Organic Carbon Concentration, Matthew J. Farragher

Electronic Theses and Dissertations

Concentrations of dissolved organic carbon (DOC) increased across lakes of Maine for several decades before stabilizing or decreasing in recent years. To investigate the seasonal effects of DOC on phytoplankton habitat structure, I assessed vertical gradients of temperature, oxygen, light, and chlorophyll in four lakes in Acadia National Park from under ice through fall turnover in 2020. Lake DOC concentrations ranged from low (~2 mg L-1) to moderate (~4 mg L-1). Low-DOC lakes were clearer, with greater mean Secchi depths (9-15 m) than moderate-DOC lakes (5-6 m). Moderate-DOC lakes experienced hypolimnetic anoxia in the summer and had more variable concentrations …

Environmental Dna Monitoring Of Non-Native Mudpuppy (Necturus Maculosus) And Transient Rainbow Smelt (Osmerus Mordax), Vaughn Holmes

Electronic Theses and Dissertations

Whether considering an expanding non-native species or a priority native species with a dwindling local population, the monitoring of low-abundance, sporadically distributed, or otherwise elusive populations, can prove difficult. In separate studies, we tested the viability of environmental DNA (eDNA) for monitoring a species in both of the above circumstances, the common mudpuppy (Necturus maculosus), a spreading non-native species, and rainbow smelt (Osmerus mordax), a declining species of concern. Mudpuppy are fully aquatic salamanders that were introduced to the Belgrade region of central Maine in 1939 and again in 1940. Though they had been present for nearly 80 years when …