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Full-Text Articles in Ecology and Evolutionary Biology

Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch Jan 2023

Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of these populations may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis penguins that breed along the WAP during the austral summer. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across four austral summers. Specifically, we examined krill connectivity around the Adélie gap, a 400 km long region along …


Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards Jan 2023

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ13C and δ15N) of host and symbiont tissues …


Atlantic Surfclam (Spisula Solidissima) Population Demographics And Distribution Along The Middle Atlantic Bight, Mauricio González Díaz Dec 2022

Atlantic Surfclam (Spisula Solidissima) Population Demographics And Distribution Along The Middle Atlantic Bight, Mauricio González Díaz

OES Theses and Dissertations

The Atlantic surfclam (Spisula solidissima) is a long-lived benthic biomass dominant organism that occurs on the Middle Atlantic Bight (MAB) continental shelf between 10 m and 50 m. Trends in Atlantic surfclam population specific growth and mortality rates were analyzed using four decades of age and length observations obtained from NOAA stock surveys from the 1980s to 2010s in six regions distributed along the MAB. Atlantic surfclam specific growth rates and asymptotic lengths were estimated from the age and length observations using the von Bertalanffy growth model. The analysis showed that the Atlantic surfclam median asymptotic length in …


Habitat Restoration Restores Underwater Soundscapes And Larval Recruitment, Jack Butler, Emily R. Anderson, Mark J. Butler Mar 2022

Habitat Restoration Restores Underwater Soundscapes And Larval Recruitment, Jack Butler, Emily R. Anderson, Mark J. Butler

Biological Sciences Faculty Publications

Habitat degradation alters many ecosystem processes, and the potential for the reestablishment of ecosystem function through restoration is an area of active research. Among marine systems, coastal habitats are particularly vulnerable to anthropogenic degradation and, in response, are the focus of marine ecological restoration. One of the crucial functions of structurally complex coastal habitats (e.g., saltmarshes, seagrass meadows, kelp forests, coral reefs) are as nurseries to coastal and offshore species, many of whose larvae utilize sound to locate suitable nursery habitat. However, the effect of habitat degradation and subsequent restoration on underwater soundscapes and their function as navigational cues for …


A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser Jan 2022

A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser

OES Faculty Publications

The distribution of marine zooplankton depends on both ocean currents and swimming behavior. Many zooplankton perform diel vertical migration (DVM) between the surface and subsurface, which can have different current regimes. If concentration mechanisms, such as fronts or eddies, are present in the subsurface, they may impact zooplankton near-surface distributions when they migrate to near-surface waters. A subsurface, retentive eddy within Palmer Deep Canyon (PDC), a submarine canyon along the West Antarctic Peninsula (WAP), retains diurnal vertically migrating zooplankton in previous model simulations. Here, we tested the hypothesis that the presence of the PDC and its associated subsurface eddy increases …


The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann Jan 2022

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann

CCPO Publications

Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …


Bio-Go-Ship: The Time Is Right To Establish Global Repeat Sections Of Ocean Biology, Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny Jan 2022

Bio-Go-Ship: The Time Is Right To Establish Global Repeat Sections Of Ocean Biology, Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny

OES Faculty Publications

In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in …


Unified Methods In Collecting, Preserving, And Archiving Coral Bleaching And Restoration Specimens To Increase Sample Utility And Interdisciplinary Collaboration, Rebecca Vega Thurber, Emily R. Schmeltzer, Andréa G. Grottoli, Robert Van Woesik, Robert J. Toonen, Mark Warner, Kerri L. Dobson, Rowan H. Mclachlan, Katie Barott, Daniel J. Barshis, Justin Baumann, Leila Chapron, David J. Combosch, Adrienne M.S. Correa, Thomas M. Decarlo, Mary Hagedorn, Laetitia Hédouin, Kenneth Hoadley, Thomas Felis, Christine Ferrier-Pagès, Carly Kenkel, Ilsa B. Kuffner, Jennifer Matthews, Mónica Medina, Christopher Meyer, Corinna Oster, James Price, Hollie M. Putnam, Yvonne Sawall Jan 2022

Unified Methods In Collecting, Preserving, And Archiving Coral Bleaching And Restoration Specimens To Increase Sample Utility And Interdisciplinary Collaboration, Rebecca Vega Thurber, Emily R. Schmeltzer, Andréa G. Grottoli, Robert Van Woesik, Robert J. Toonen, Mark Warner, Kerri L. Dobson, Rowan H. Mclachlan, Katie Barott, Daniel J. Barshis, Justin Baumann, Leila Chapron, David J. Combosch, Adrienne M.S. Correa, Thomas M. Decarlo, Mary Hagedorn, Laetitia Hédouin, Kenneth Hoadley, Thomas Felis, Christine Ferrier-Pagès, Carly Kenkel, Ilsa B. Kuffner, Jennifer Matthews, Mónica Medina, Christopher Meyer, Corinna Oster, James Price, Hollie M. Putnam, Yvonne Sawall

Biological Sciences Faculty Publications

Coral reefs are declining worldwide primarily because of bleaching and subsequent mortality resulting from thermal stress. Currently, extensive efforts to engage in more holistic research and restoration endeavors have considerably expanded the techniques applied to examine coral samples. Despite such advances, coral bleaching and restoration studies are often conducted within a specific disciplinary focus, where specimens are collected, preserved, and archived in ways that are not always conducive to further downstream analyses by specialists in other disciplines. This approach may prevent the full utilization of unexpended specimens, leading to siloed research, duplicative efforts, unnecessary loss of additional corals to research …


Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor Jan 2021

Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor

OES Faculty Publications

A suite of lipid biomarkers plus compound-specific carbon isotopes of major sterols were determined in muscle tissues across increasing sizes of northern Neptune whelks Neptunea heros, developing eggs and potential diets to link trophic patterns, metabolism and carbon sources on the Chukchi Sea shelf. Analysis of primary prey included the northern clam Astarte borealis, water column particulate organic matter (POM) and surface sediments near the collection sites. Sterols specific to major algal groups along with algal-derived polyunsaturated fatty acids (C20:5n-3, C20:4n-3, C22:6n-3) in whelk muscle tissue reflected the importance of algal primary production to benthic consumers and its …


Scaling The Effects Of Ocean Acidification On Coral Growth And Coral-Coral Competition On Coral Community Recovery, Nicolas R. Evensen, Yves-Marie Bozec, Peter J. Edmunds, Peter J. Mumby Jan 2021

Scaling The Effects Of Ocean Acidification On Coral Growth And Coral-Coral Competition On Coral Community Recovery, Nicolas R. Evensen, Yves-Marie Bozec, Peter J. Edmunds, Peter J. Mumby

Biological Sciences Faculty Publications

Ocean acidification (OA) is negatively affecting calcification in a wide variety of marine organisms. These effects are acute for many tropical scleractinian corals under short-term experimental conditions, but it is unclear how these effects interact with ecological processes, such as competition for space, to impact coral communities over multiple years. This study sought to test the use of individual-based models (IBMs) as a tool to scale up the effects of OA recorded in short-term studies to community-scale impacts, combining data from field surveys and mesocosm experiments to parameterize an IBM of coral community recovery on the fore reef of Moorea, …


Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson Jan 2021

Marine Phytoplankton Functional Types Exhibit Diverse Responses To Thermal Change, S. I. Anderson, A. D. Barton, Sophie Clayton, S. Dutkiewicz, T. A. Rynearson

OES Faculty Publications

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group's growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our …


Potential Virus-Mediated Nitrogen Cycling In Oxygen-Depleted Oceanic Waters, M. Consuelo Gazitúa, Dean R. Vik, Simon Roux, Ann C. Gregory, Benjamin Bolduc, Brittany Widner, Margaret R. Mulholland, Steven J. Hallam, Osvaldo Ulloa, Matthew B. Sullivan Nov 2020

Potential Virus-Mediated Nitrogen Cycling In Oxygen-Depleted Oceanic Waters, M. Consuelo Gazitúa, Dean R. Vik, Simon Roux, Ann C. Gregory, Benjamin Bolduc, Brittany Widner, Margaret R. Mulholland, Steven J. Hallam, Osvaldo Ulloa, Matthew B. Sullivan

OES Faculty Publications

Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ …


Adaptive Divergence, Neutral Panmixia, And Algal Symbiont Population Structure In The Temperate Coral Astrangia Poculata Along The Mid-Atlantic United States, Hannah E. Aichelman, Daniel J. Barshis Nov 2020

Adaptive Divergence, Neutral Panmixia, And Algal Symbiont Population Structure In The Temperate Coral Astrangia Poculata Along The Mid-Atlantic United States, Hannah E. Aichelman, Daniel J. Barshis

Biological Sciences Faculty Publications

Astrangia poculata is a temperate scleractinian coral that exists in facultative symbiosis with the dinoflagellate alga Breviolum psygmophilum across a range spanning the Gulf of Mexico to Cape Cod, Massachusetts. Our previous work on metabolic thermal performance of Virginia (VA) and Rhode Island (RI) populations of A. poculata revealed physiological signatures of cold (RI) and warm (VA) adaptation of these populations to their respective local thermal environments. Here, we used whole-transcriptome sequencing (mRNA-Seq) to evaluate genetic differences and identify potential loci involved in the adaptive signature of VA and RI populations. Sequencing data from 40 A. poculata individuals, including 10 …


Performance Evaluation Of Cetacean Species Distribution Models Developed Using Generalized Additive Models And Boosted Regression Trees, Elizabeth A. Becker, James V. Carretta, Karin A. Forney, Jay Barlow, Stephanie Brodie, Ryan Hoopes, Michael G. Jacox, Sara M. Maxwell, Jessica V. Redfern, Nicholas B. Sisson, Heather Welch, Elliott L. Hazen Apr 2020

Performance Evaluation Of Cetacean Species Distribution Models Developed Using Generalized Additive Models And Boosted Regression Trees, Elizabeth A. Becker, James V. Carretta, Karin A. Forney, Jay Barlow, Stephanie Brodie, Ryan Hoopes, Michael G. Jacox, Sara M. Maxwell, Jessica V. Redfern, Nicholas B. Sisson, Heather Welch, Elliott L. Hazen

Biological Sciences Faculty Publications

Species distribution models (SDMs) are important management tools for highly mobile marine species because they provide spatially and temporally explicit information on animal distribution. Two prevalent modeling frameworks used to develop SDMs for marine species are generalized additive models (GAMs) and boosted regression trees (BRTs), but comparative studies have rarely been conducted; most rely on presence-only data; and few have explored how features such as species distribution characteristics affect model performance. Since the majority of marine species BRTs have been used to predict habitat suitability, we first compared BRTs to GAMs that used presence/absence as the response variable. We then …


Diet Analysis Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Virginia, Kristen Marie Volker Apr 2020

Diet Analysis Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Virginia, Kristen Marie Volker

Biological Sciences Theses & Dissertations

This study describes the diet of bottlenose dolphins (Tursiops truncatus) stranded in Virginia via stomach content analysis and considers factors such as proportion of numerical abundance and reconstructed mass, frequency of occurrence, average reconstructed prey size, prey diversity and quantity, and otolith degradation code. Fish size was estimated via regression equations established from local fish collected during the study that derive wet weight directly from otolith length or width. Squid size is estimated from previously published equations. Soniferous fishes dominated the diet, especially Atlantic croaker, spot, and seatrout spp., adding evidence to the theory that bottlenose dolphins passively …


Sponge Community Biocomplexity, Competition, And Functional Significance In Hard-Bottom Habitats Of The Florida Keys, Fl (Usa), Marla Maxine Valentine Apr 2019

Sponge Community Biocomplexity, Competition, And Functional Significance In Hard-Bottom Habitats Of The Florida Keys, Fl (Usa), Marla Maxine Valentine

Biological Sciences Theses & Dissertations

Sponges can have powerful effects on ecosystem processes in shallow, tropical marine ecosystems and are an integral component of the bentho-pelagic cycle of nutrients, via filtering of dissolved and particulate organic matter from the water column. The diversity of marine communities is thought to play a determining role in intensity of ecosystem processes; thus the loss of taxa alters community function and by extension ecosystem processes. Coastal sponge populations worldwide are increasingly exposed to declining water quality that in several regions has resulted in mass sponge mortalities and reduced sponge diversity. In the Florida Keys (Florida, USA), for example, frequent …


Editorial: Advances In The Biology And Conservation Of Marine Turtles, Sara M. Maxwell, Annette C. Broderick, Peter H. Dutton, Sabrina Fossette-Halot, Mariana M.P.B. Fuentes, Richard D. Reina Jan 2019

Editorial: Advances In The Biology And Conservation Of Marine Turtles, Sara M. Maxwell, Annette C. Broderick, Peter H. Dutton, Sabrina Fossette-Halot, Mariana M.P.B. Fuentes, Richard D. Reina

Biological Sciences Faculty Publications

(First Paragraph) Marine turtles have been the subject of research over many decades, inspired by their unique life history and necessitated by their declining populations from a suite of human impacts including direct harvest, bycatch in marine fisheries, pollution, and climate change. Despite this, much about marine turtle biology has remained a mystery (Godley et al., 2008; Rees et al., 2016; Wildermann et al., 2018), but the rate of scientific discovery is increasing rapidly. As research techniques and conservation practices expand, the marine turtle research community has kept abreast of these developments and their application to marine turtles. In this …


Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv Jan 2019

Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sponges can have powerful effects on ecosystem processes in shallow tropical marine ecosystems. They drive benthic-pelagic coupling by filtering dissolved and particulate organic matter from the water column, alter water chemistry in association with their symbiotic microorganisms, and increase habitat structural complexity. Anthropogenic degradation of coastal waters is widespread and can reduce the density and diversity of foundation species such as sponges, potentially diminishing their contributions to ecosystem processes. We used a novel mesocosm design that minimized artifacts associated with traditional single-species and closed-system filtration experiments to examine the effects of water turnover and sponge biomass on water-column properties. Using …


Patterns Of Diatom Diversity Correlate With Dissolved Trace Metal Concentrations And Longitudinal Position In The Notheast Pacific Coastal Offshore Transition Zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, Jagruti Vedamati, Bethany D. Jenkins Jan 2019

Patterns Of Diatom Diversity Correlate With Dissolved Trace Metal Concentrations And Longitudinal Position In The Notheast Pacific Coastal Offshore Transition Zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, Jagruti Vedamati, Bethany D. Jenkins

OES Faculty Publications

Diatoms are important primary producers in the northeast Pacific Ocean, with their productivity closely linked to pulses of trace elements in the western high nitrate, low chlorophyll (HNLC) region of the oceanographic time series transect 'Line P.' Recently, the coastal-HNLC transition zone of the Line P transect was identified as a hotspot of phytoplankton productivity, potentially controlled by a combination of trace element and macronutrient concentrations. Here we describe diatom community composition in the eastern Line P transect, including the coastal- HNLC transition zone, with a method using high-throughput sequencing of diatom 18S gene amplicons. We identified significant correlations between …


Spatial Structuring And Life History Connectivity Of Antarctic Silverfish Along The Southern Continental Shelf Of The Weddell Sea, Jilda Alicia Caccavo, Julian R. Ashford, Svenja Ryan, Chiara Papetti, Michael Schröder, Lorenzo Zane Jan 2019

Spatial Structuring And Life History Connectivity Of Antarctic Silverfish Along The Southern Continental Shelf Of The Weddell Sea, Jilda Alicia Caccavo, Julian R. Ashford, Svenja Ryan, Chiara Papetti, Michael Schröder, Lorenzo Zane

OES Faculty Publications

A multi-disciplinary approach was employed to examine a physical-biological population hypothesis for a critical forage species, the Antarctic silverfish Pleuragramma antarctica. Caccavo et al. (2018; Sci Rep 8:17856) had shown strong gene flow along the westward Antarctic Slope Current, in addition to spatially recurring length modes that provided evidence for episodic connectivity. In this paper, otolith nucleus chemistry from a subset of fish collected in the southern Weddell Sea as part of a hydrographic survey of the Filchner Trough system was used to test between connectivity scenarios. Nucleus chemistry, which reflects environmental exposure during early life, showed significant …


Along-Shelf Connectivity And Circumpolar Gene Flow In Antarctic Silverfish (Pleuragramma Antarctica), Jilda Alicia Caccavo, Chiara Papetti, Maj Wetjen, Rainer Knust, Julian R. Ashford, Lorenzo Zane Dec 2018

Along-Shelf Connectivity And Circumpolar Gene Flow In Antarctic Silverfish (Pleuragramma Antarctica), Jilda Alicia Caccavo, Chiara Papetti, Maj Wetjen, Rainer Knust, Julian R. Ashford, Lorenzo Zane

OES Faculty Publications

The Antarctic silverfish (Pleuragramma antarctica) is a critically important forage species with a circumpolar distribution and is unique among other notothenioid species for its wholly pelagic life cycle. Previous studies have provided mixed evidence of population structure over regional and circumpolar scales. The aim of the present study was to test the recent population hypothesis for Antarctic silverfish, which emphasizes the interplay between life history and hydrography in shaping connectivity. A total of 1067 individuals were collected over 25 years from different locations on a circumpolar scale. Samples were genotyped at fifteen microsatellites to assess population differentiation and …


Troubled Waters: Threats And Extinction Risk Of The Sharks, Rays And Chimaeras Of The Arabian Sea And Adjacent Waters, Rima W. Jabado, Peter M. Kyne, Riley A. Pollom, David A. Ebert, Colin A. Simpfendorfer, Gina M. Ralph, Shakha S. Al Dhaheri, K. V. Akhilesh, Khadeeja Ali, Mohamud Hassan Ali Nov 2018

Troubled Waters: Threats And Extinction Risk Of The Sharks, Rays And Chimaeras Of The Arabian Sea And Adjacent Waters, Rima W. Jabado, Peter M. Kyne, Riley A. Pollom, David A. Ebert, Colin A. Simpfendorfer, Gina M. Ralph, Shakha S. Al Dhaheri, K. V. Akhilesh, Khadeeja Ali, Mohamud Hassan Ali

Biological Sciences Faculty Publications

The extinction risk of sharks, rays and chimaeras is higher than that for most other vertebrates due to low intrinsic population growth rates of many species and the fishing intensity they face. The Arabian Sea and adjacent waters border some of the most important chondrichthyan fishing and trading nations globally, yet there has been no previous attempt to assess the conservation status of species occurring here. Using IUCN Red List of Threatened Species Categories and Criteria and their guidelines for application at the regional level, we present the first assessment of extinction risk for 153 species of sharks, rays and …


Dermal Mycobacteriosis And Warming Sea Surface Temperatures Are Associated With Elevated Mortality Of Striped Bass In Chesapeake Bay, Maya L. Groner, John M. Hoenig, Roger Pradel, Rémi Choquet, Wolfgang K. Vogelbein, David T. Gauthier, Marjorie A. M. Friedrichs Sep 2018

Dermal Mycobacteriosis And Warming Sea Surface Temperatures Are Associated With Elevated Mortality Of Striped Bass In Chesapeake Bay, Maya L. Groner, John M. Hoenig, Roger Pradel, Rémi Choquet, Wolfgang K. Vogelbein, David T. Gauthier, Marjorie A. M. Friedrichs

Biological Sciences Faculty Publications

Temperature is hypothesized to alter disease dynamics, particularly when species are living at or near their thermal limits. When disease occurs in marine systems, this can go undetected, particularly if the disease is chronic and progresses slowly. As a result, population-level impacts of diseases can be grossly underestimated. Complex migratory patterns, stochasticity in recruitment, and data and knowledge gaps can hinder collection and analysis of data on marine diseases. New tools enabling quantification of disease impacts in marine environments include coupled biogeochemical hydrodynamic models (to hindcast key environmental data), and multievent, multistate mark-recapture (MMSMR) (to quantify the effects of environmental …


Genetic Patterns In Peripheral Marine Populations Of The Fusilier Fish Caesio Cuning Within The Kuroshio Current, Amanda S. Ackiss, Christopher E. Bird, Yuichi Akita, Mudjekeewis D. Santos, Katsunori Tachihara, Kent E. Carpenter Sep 2018

Genetic Patterns In Peripheral Marine Populations Of The Fusilier Fish Caesio Cuning Within The Kuroshio Current, Amanda S. Ackiss, Christopher E. Bird, Yuichi Akita, Mudjekeewis D. Santos, Katsunori Tachihara, Kent E. Carpenter

Biological Sciences Faculty Publications

Aim: Mayr’s central‐peripheral population model (CCPM) describes the marked differences between central and peripheral populations in genetic diversity, gene flow, and census size. When isolation leads to genetic divergence, these peripheral populations have high evolutionary value and can influence biogeographic patterns. In tropical marine species with pelagic larvae, powerful western‐boundary currents have great potential to shape the genetic characteristics of peripheral populations at latitudinal extremes. We tested for the genetic patterns expected by the CCPM in peripheral populations that are located within the Kuroshio Current for the Indo‐Pacific reef fish, Caesio cuning.

Methods: We used a panel of 2,677 …


Global Conservation Status Of Marine Pufferfishes (Tetraodontiformes: Tetraodontidae), Emilie Stump, Gina M. Ralph, Mia T. Comeros-Raynal, Keiichi Matsuura, Kent E. Carpenter Apr 2018

Global Conservation Status Of Marine Pufferfishes (Tetraodontiformes: Tetraodontidae), Emilie Stump, Gina M. Ralph, Mia T. Comeros-Raynal, Keiichi Matsuura, Kent E. Carpenter

Biological Sciences Faculty Publications

Puffers are biologically and ecologically fascinating fishes best known for their unique morphology and arsenal of defenses including inflation and bioaccumulation of deadly neurotoxins. These fishes are also commercially, culturally, and ecologically important in many regions. One-hundred-and-fifty-one species of marine puffers were assessed against the International Union for Conservation of Nature (IUCN) Red List Criteria at a 2011 workshop held in Xiamen, China. Here we present the first comprehensive review of puffer geographic and depth distribution, use and trade, and habitats and ecology and a summary of the global conservation status of marine puffers, determined by applying the International Union …


Characterizing Habitat Suitability For A Central‐Place Forager In A Dynamic Marine Environment, Dana K. Briscoe, Sabrina Fossette, Kylie L. Scales, Elliott L. Hazen, Steven J. Bograd, Sara M. Maxwell, Elizabeth A. Mchuon, Patrick W. Robibson, Carey Kuhn, Daniel P. Costa, Larry B. Crowder, Rebecca L. Lewison Jan 2018

Characterizing Habitat Suitability For A Central‐Place Forager In A Dynamic Marine Environment, Dana K. Briscoe, Sabrina Fossette, Kylie L. Scales, Elliott L. Hazen, Steven J. Bograd, Sara M. Maxwell, Elizabeth A. Mchuon, Patrick W. Robibson, Carey Kuhn, Daniel P. Costa, Larry B. Crowder, Rebecca L. Lewison

Biological Sciences Faculty Publications

Characterizing habitat suitability for a marine predator requires an understanding of the environmental heterogeneity and variability over the range in which a population moves during a particular life cycle. Female California sea lions (Zalophus californianus) are central‐place foragers and are particularly constrained while provisioning their young. During this time, habitat selection is a function of prey availability and proximity to the rookery, which has important implications for reproductive and population success. We explore how lactating females may select habitat and respond to environmental variability over broad spatial and temporal scales within the California Current System. We combine near‐real‐time …


Sea Turtles And Survivability In Demersal Trawl Fisheries: Do Comatose Olive Ridley Sea Turtles Survive Post-Release?, Sara M. Maxwell, Matthew J. Witt, Gaspard Abitsi, Marie Pierre Aboro, Pierre Didier Agamboue, Georges Mba Asseko, Francois Boussamba, Emmanuel Chartain, Micheline Schummer Gnandji, Brice Didier Koumba Mabert Jan 2018

Sea Turtles And Survivability In Demersal Trawl Fisheries: Do Comatose Olive Ridley Sea Turtles Survive Post-Release?, Sara M. Maxwell, Matthew J. Witt, Gaspard Abitsi, Marie Pierre Aboro, Pierre Didier Agamboue, Georges Mba Asseko, Francois Boussamba, Emmanuel Chartain, Micheline Schummer Gnandji, Brice Didier Koumba Mabert

Biological Sciences Faculty Publications

Incidental capture of air‑breathing species in fishing gear is a major source of mortality for many threatened populations. Even when individuals are discarded alive, they may not survive due to direct injury, or due to more cryptic internal physiological injury such as decompression sickness. Post‑release mortality, however, can be difficult to determine. In this pilot study, we deployed survivorship pop‑up archival tags (sPAT) (n = 3) for an air‑breathing species, the olive ridley sea turtle (Lepidochelys olivacea), one of the first studies to do so. We found that at least two of the three turtles survived after being …


Integrating Dynamic Subsurface Habitat Metrics Into Species Distribution Models, Stephanie Brodie, Michael G. Jacox, Steven J. Bograd, Heather Welch, Heidi Dewar, Kylie L. Scales, Sara M. Maxwell, Dana M. Briscoe, Christopher A. Edwards, Larry B. Crowder, Rebecca L. Lewison, Elliott L. Hazen Jan 2018

Integrating Dynamic Subsurface Habitat Metrics Into Species Distribution Models, Stephanie Brodie, Michael G. Jacox, Steven J. Bograd, Heather Welch, Heidi Dewar, Kylie L. Scales, Sara M. Maxwell, Dana M. Briscoe, Christopher A. Edwards, Larry B. Crowder, Rebecca L. Lewison, Elliott L. Hazen

Biological Sciences Faculty Publications

Species distribution models (SDMs) have become key tools for describing and predicting species habitats. In the marine domain, environmental data used in modeling species distributions are often remotely sensed, and as such have limited capacity for interpreting the vertical structure of the water column, or are sampled in situ, offering minimal spatial and temporal coverage. Advances in ocean models have improved our capacity to explore subsurface ocean features, yet there has been limited integration of such features in SDMs. Using output from a data-assimilative configuration of the Regional Ocean Modeling System, we examine the effect of including dynamic subsurface …


Distributions Of Krill And Antarctic Silverfish And Correlations With Environmental Variables In The Western Ross Sea, Antarctica, L. Brynn Davis, Eileen E. Hofmann, John M. Klinck, Andrea Piñones, Michael S. Dinniman Dec 2017

Distributions Of Krill And Antarctic Silverfish And Correlations With Environmental Variables In The Western Ross Sea, Antarctica, L. Brynn Davis, Eileen E. Hofmann, John M. Klinck, Andrea Piñones, Michael S. Dinniman

CCPO Publications

Antarctic krill Euphausia superba, crystal krill E. crystallorophias, and Antarctic silverfish Pleuragramma antarctica are key mid-trophic level species in the Ross Sea, connecting primary production to the upper trophic levels. Distributions of these species were constructed from observations made in the western Ross Sea from 1988 to 2004. Distributions of environmental conditions were obtained from a 5-km resolution circulation model (temperature, mixed layer depth, surface speed) and satellite-derived observations (chlorophyll, sea ice cover). A hierarchy of statistical methods determined correlations and relationships between species and environmental conditions. Each species occupies a localized habitat defined by different environmental characteristics. …


Determining Critical Internesting And Foraging Habitats For The Conservation Of Sea Turtles In Gabon, Africa Using Satellite Tracking And Stable Isotope Analysis, Tiffany M. Dawson Jul 2017

Determining Critical Internesting And Foraging Habitats For The Conservation Of Sea Turtles In Gabon, Africa Using Satellite Tracking And Stable Isotope Analysis, Tiffany M. Dawson

Biological Sciences Theses & Dissertations

Understanding the horizontal and vertical habitat of olive ridley sea turtles (Lepidochelys olivacea), a threatened species, is critical for determining regions of protection that may effectively reduce bycatch, the largest threat to this species. Satellite transmitters were used to determine the movement and dive behavior of 21 female olive ridley turtles tagged in Pongara National Park, Gabon during the 2012, 2013, and 2015 nesting seasons. A switching state space model was used to filter the tracking data and categorize the internesting and post-nesting movements. Gridded utilization distribution (UD) home range analysis of tracking data revealed that the entire core habitat …