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Full-Text Articles in Ecology and Evolutionary Biology

Ecology And Evolution Of Social Information Use, Clare T. M. Doherty Nov 2022

Ecology And Evolution Of Social Information Use, Clare T. M. Doherty

Dartmouth College Ph.D Dissertations

Sociality is a strategy many animals employ to cope with their environments, enabling them to survive and reproduce more successfully than would otherwise be possible. When navigating their environments and making decisions, social individuals often use information provided by conspecifics (in the form of social cues and signals), thereby increasing the scope and reliability of the information they can gather. However, social information use may be influenced by many factors, including key differences in context across the physical and social environment. My thesis asks and answers a series of questions regarding the trade-offs in social information use across different contexts, …


Larval Anatomy Of Monotypic Painted Ant Nest Frogs Lithodytes Lineatus Reveals Putative Homoplasies With The Leptodactylus Pentadactylus Group (Anura: Leptodactylidae), Filipe A.C Do Nascimento, Rafael O. De Sá, Paulo C. De A. Garcia Jan 2021

Larval Anatomy Of Monotypic Painted Ant Nest Frogs Lithodytes Lineatus Reveals Putative Homoplasies With The Leptodactylus Pentadactylus Group (Anura: Leptodactylidae), Filipe A.C Do Nascimento, Rafael O. De Sá, Paulo C. De A. Garcia

Biology Faculty Publications

The morphological diversity of anuran larvae made them an important source of information for evolutionary and systematic studies. For the monotypic frog genus Lithodytes, which has an interesting taxonomic history, including its past synonymizing with Adenomera and its placement as a subgenus of Leptodactylus, the information provided from its larvae can help to understand its systematics interrelationships and also provide insights about its evolutionary trajectories. Herein, we provide a detailed description of the larval morphology of Lithodytes lineatus, including novel data of internal morphology (buccopharyngeal cavity and skeleton), and discuss some morphological and evolutionary aspects in relation …


Population Genomic Transformations Induced By Isolation Of Wild Bird Avian Influenza Viruses (Orthomyxoviridae) In Embryonated Chicken Eggs, Matthew W. Hopken, Antoinette J. Piaggio, K. L. Pabilonia, James Pierce, Theodore Anderson, Courtney Pierce, Zaid Abdo Jan 2021

Population Genomic Transformations Induced By Isolation Of Wild Bird Avian Influenza Viruses (Orthomyxoviridae) In Embryonated Chicken Eggs, Matthew W. Hopken, Antoinette J. Piaggio, K. L. Pabilonia, James Pierce, Theodore Anderson, Courtney Pierce, Zaid Abdo

USDA Wildlife Services: Staff Publications

Isolation and cultivation of wild-type viruses in model organism cells or tissues is standard practice in virology. Oftentimes, the virus host species is distantly related to the species from which the culture system was developed. Thus, virus culture in these tissues and cells basically constitutes a host jump, which can lead to genomic changes through genetic drift and/or adaptation to the culture system. We directly sequenced 70 avian influenza virus (Orthomyxoviridae) genomes from oropharyngeal/cloacal swabs collected from wild bird species and paired virus isolates propagated from the same samples following isolation in specific-pathogen-free embryonated chicken eggs. The data were analyzed …


Distribution And Evolution Of Fukushima Dai-Ichi Derived 137cs, 90sr, And 129i In Surface Seawater Off The Coast Of Japan, Jennifer A. Kenyon, Ken O. Buesseler, Núria Casacuberta, Maxi Castrillejo, Shigeyoshi Otosaka, Pere Masqué, Jessica A. Drysdale, Steven M. Pike, Virginie Sanial Jan 2020

Distribution And Evolution Of Fukushima Dai-Ichi Derived 137cs, 90sr, And 129i In Surface Seawater Off The Coast Of Japan, Jennifer A. Kenyon, Ken O. Buesseler, Núria Casacuberta, Maxi Castrillejo, Shigeyoshi Otosaka, Pere Masqué, Jessica A. Drysdale, Steven M. Pike, Virginie Sanial

Research outputs 2014 to 2021

© 2020 American Chemical Society. The Fukushima Dai-ichi Nuclear Power Plants (FDNPPs) accident in 2011 led to an unprecedented release of radionuclides into the environment. Particularly important are 90Sr and 137Cs due to their known health detriments and long half-lives (T1/2 ≈ 30 y) relative to ecological systems. These radionuclides can be combined with the longer-lived 129I (T1/2 = 15.7 My) to trace hydrologic, atmospheric, oceanic, and geochemical processes. This study seeks to evaluate 137Cs, 90Sr, and 129I concentrations in seawater off the coast of Japan, reconcile the sources of contaminated waters, and assess the application of 137Cs/90Sr, 129I/137Cs, and …


Patterns Of Morphological Plasticity In Metriaclima Zebra And Danio Rerio Suggest Differently Canalized Phenotypes Due To Form-Function Relationships, Dylan Jockel Oct 2019

Patterns Of Morphological Plasticity In Metriaclima Zebra And Danio Rerio Suggest Differently Canalized Phenotypes Due To Form-Function Relationships, Dylan Jockel

Masters Theses

In order to ascertain the degree of compatibility in developmental restructuring and behavioral plasticity between two fish species frequently made subject of laboratory research (Metriaclima zebra & Danio rerio), alternative trophic niche exposure experiments utilizing novel three-prong feeding treatments were conducted to obtain morphometric data, which demonstrated both species do bear some degree of plasticity. The results are somewhat complicated by differences in locality of detectable restructuring, which may be due to disparity in the form-function relationship for each species’ lineage. Each is notable in the manner of respective species’ jaw protrusion, as it is driven by anterior …


Octopi-Ing A Unique Niche In Comparative Psychology, Jennifer Vonk Jan 2019

Octopi-Ing A Unique Niche In Comparative Psychology, Jennifer Vonk

Animal Sentience

Mather’s work has been fundamental in informing scientists of the relatively mysterious behavior and cognition of an understudied group of animals – the cephalopods. This work helps to fill a gap in the comparative literature that has historically sought evidence for complex behavior only in species that are closely related to humans or share important ecological features such as social complexity.


Our Brains Make Us Out To Be Unique In Ways We Are Not, Matthew J. Criscione, Julian Paul Keenan Jan 2019

Our Brains Make Us Out To Be Unique In Ways We Are Not, Matthew J. Criscione, Julian Paul Keenan

Animal Sentience

Humans have long viewed themselves in a favorable light. This bias is consistent with a general pattern of self-enhancement. Neural systems in the medial prefrontal cortex underlie this way of thinking, which, even when false, may be beneficial for survival. It is hence not surprising that we often disregard contrary evidence in believing ourselves superior.


Can They Suffer?, Todd K. Shackelford Jan 2018

Can They Suffer?, Todd K. Shackelford

Animal Sentience

We should treat sentient nonhuman animals as worthy of moral consideration, not because we share an evolutionary history with them, but because they can suffer. As Chapman & Huffman (2018) argue, humans are not uniquely disconnected from other species. We should minimize the suffering we inflict on sentient beings — whether human or nonhuman — not because they, too, are tool-makers or have sophisticated communication systems, but because they, too, can suffer, and suffering is bad.


The Emotional Brain Of Fish, Sonia Rey Planellas Jan 2017

The Emotional Brain Of Fish, Sonia Rey Planellas

Animal Sentience

Woodruff (2017) analyzes structural homologies and functional equivalences between the brains of mammals and fish to understand where sentience and social cognition might reside in teleosts. He compares neuroanatomical, neurophysiological and behavioural correlates. I discuss current advances in the study of fish cognitive abilities and emotions, and advocate an evolutionary approach to the underlying basis of sentience in teleosts.


Consciousness Is Not Inherent In But Emergent From Life, Jon Mallatt, Todd E. Feinberg Jan 2017

Consciousness Is Not Inherent In But Emergent From Life, Jon Mallatt, Todd E. Feinberg

Animal Sentience

Reber’s theory of the cellular basis of consciousness (CBC) is right to emphasize that we should study consciousness (sentience) in its simplest form, taking its evolution into account. However, not enough evidence is presented to support CBC’s unorthodox claim that even simple, one-celled organisms are conscious. As pointed out by other commentators, the CBC seems to be based on outdated ideas about evolution and does not acknowledge that consciousness could be an evolutionary novel feature. Such emergent features are abundant in living organisms. We review our own emergentist solution, in which consciousness evolved in the elaborating nervous systems of the …


Cognitive Continuity In Cognitive Dissonance, David R. Brodbeck, Madeleine I. R. Brodbeck Jan 2017

Cognitive Continuity In Cognitive Dissonance, David R. Brodbeck, Madeleine I. R. Brodbeck

Animal Sentience

Zentall’s (2016) model of cognitive dissonance is compatible with cognitive continuity between humans and nonhumans. It may help explain cognitive dissonance-like behavior in many species, including humans. It is also consistent with Tinbergen’s (1963) ‘four whys’ in ethological explanation.


G:, Taylor Lafe Cantrall Jan 2017

G:, Taylor Lafe Cantrall

Senior Projects Spring 2017

Senior Project submitted to The Division of Languages and Literature of Bard College.


Evolutionary Dynamics Of Tree Invasions: Complementing The Unified Framework For Biological Invasions, Rafael D. Zenni, Ian A. Dickie, Michael J. Wingfield, Heidi Hirsch, Casparus J. Crous, Laura A. Meyerson, Treena I. Burgess, Thalita G. Zimmermann, Metha M. Klock, Evan Siemann, Alexandra Erfmeier, Roxana Aragon, Lia Montti, Johannes J. Le Roux Dec 2016

Evolutionary Dynamics Of Tree Invasions: Complementing The Unified Framework For Biological Invasions, Rafael D. Zenni, Ian A. Dickie, Michael J. Wingfield, Heidi Hirsch, Casparus J. Crous, Laura A. Meyerson, Treena I. Burgess, Thalita G. Zimmermann, Metha M. Klock, Evan Siemann, Alexandra Erfmeier, Roxana Aragon, Lia Montti, Johannes J. Le Roux

Faculty Publications, Environmental Studies

Evolutionary processes greatly impact the outcomes of biological invasions. An extensive body of research suggests that invasive populations often undergo phenotypic and ecological divergence from their native sources. Evolution also operates at different and distinct stages during the invasion process. Thus, it is important to incorporate evolutionary change into frameworks of biological invasions because it allows us to conceptualize how these processes may facilitate or hinder invasion success. Here, we review such processes, with an emphasis on tree invasions, and place them in the context of the unified framework for biological invasions. The processes and mechanisms described are pre-introduction evolutionary …


Fishes As A Template For Reticulate Evolution: A Case Study Involving Catostomus In The Colorado River Basin Of Western North America, Max Russell Bangs Dec 2016

Fishes As A Template For Reticulate Evolution: A Case Study Involving Catostomus In The Colorado River Basin Of Western North America, Max Russell Bangs

Graduate Theses and Dissertations

Hybridization is neither simplistic nor phylogenetically constrained, and post hoc introgression can have profound evolutionary effects. Most studies have focused on tractable model systems, rather than organisms with complicated phylogenetic histories. Finescale Sucker (genus Catostomus) in western North America is recognized as a paradigm of fish hybridization. Yet, its extent of historic and contemporary introgression is largely unstudied, an aspect that impedes the resolution of its phylogeny as a baseline for conservation. To explore reticulation in this group, I assayed variation of 20 Catostomus species across temporal and geographic scales by analyzing hundreds of samples and employing a combination of …


“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key Sep 2016

“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key

Animal Sentience

Reber (2016) attempts to resuscitate an obscure and outdated hypothesis referred to as the “cellular basis of consciousness” that was originally formulated by the author nearly twenty years ago. This hypothesis proposes that any organism with flexible cell walls, a sensitivity to its surrounds, and the capacity for locomotion will possess the biological foundations of mind and consciousness. Reber seeks to reduce consciousness to a fundamental property inherent to individual cells rather than to centralised nervous systems. This commentary shows how this hypothesis is based on supposition, false premises and a misunderstanding of evolutionary theory. The cellular basis of consciousness …


Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau Sep 2016

Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau

Animal Sentience

According to Reber’s model, Cellular Basis of Consciousness (CBC), sentience had its origins in a unicellular organism and is an inherent property of living, mobile organic forms. He argues by analogy to basic physical forces which he considers to be inherent properties of matter; I suggest that they are instead the stuff of scientific investigation in physics. I find no convincing argument that sentience had to begin in endogenously mobile cells, a criterial attribute of the originator cell(s)for sentience according to CBC. Non-endogenously mobile cells, (i.e., plants or precursors) in a moving environment would suffice. Despite my concerns and the …


Fish Pain: An Inconvenient Truth, Culum Brown May 2016

Fish Pain: An Inconvenient Truth, Culum Brown

Culum Brown, PhD

Whether fish feel pain is a hot political topic. The consequences of our denial are huge given the billions of fish that are slaughtered annually for human consumption. The economic costs of changing our commercial fishery harvest practices are also likely to be great. Key outlines a structure-function analogy of pain in humans, tries to force that template on the rest of the vertebrate kingdom, and fails. His target article has so far elicited 34 commentaries from scientific experts from a broad range of disciplines; only three of these support his position. The broad consensus from the scientific community is …


Slavery, Welfare And The Sixth Extinction, Stephen R. Clark Mar 2016

Slavery, Welfare And The Sixth Extinction, Stephen R. Clark

Animal Sentience

Ng’s laudable concern for animal welfare would be welcome to any sensible slave-owner wishing to preserve his investment. What welfarism – for slave-owners and animal husbandmen – fails to call into question is whether we have the right to breed, hold captive and kill animals at all: If it matters, as the widely recognized slogan of ‘Five Freedoms’ suggests, that animals have the chance to live a ‘normal’ life, then more matters than keeping them ‘happy’ in subjection. Their lives – and also the lives of wild things – also deserve respect.


Fish Pain: An Inconvenient Truth, Culum Brown Jan 2016

Fish Pain: An Inconvenient Truth, Culum Brown

Animal Sentience

Whether fish feel pain is a hot political topic. The consequences of our denial are huge given the billions of fish that are slaughtered annually for human consumption. The economic costs of changing our commercial fishery harvest practices are also likely to be great. Key outlines a structure-function analogy of pain in humans, tries to force that template on the rest of the vertebrate kingdom, and fails. His target article has so far elicited 34 commentaries from scientific experts from a broad range of disciplines; only three of these support his position. The broad consensus from the scientific community is …


Pain And Fish Welfare, Eliane Gonçalves-De-Freitas Jan 2016

Pain And Fish Welfare, Eliane Gonçalves-De-Freitas

Animal Sentience

The evolutionary approach of Key’s (2016) target article, generically comparing humans with fish of all kinds, is simplistic. The author ignores published research on structural and molecular aspects of pain in fish. The target article reads more like a selective polemic against fish welfare than an even-handed analysis.


Pain-Capable Neural Substrates May Be Widely Available In The Animal Kingdom, Edgar T. Walters Jan 2016

Pain-Capable Neural Substrates May Be Widely Available In The Animal Kingdom, Edgar T. Walters

Animal Sentience

Neural and behavioral evidence from diverse species indicates that some forms of pain may be generated by coordinated activity in networks far smaller than the cortical pain matrix in mammals. Studies on responses to injury in squid suggest that simplification of the circuitry necessary for conscious pain might be achieved by restricting awareness to very limited information about a noxious event, possibly only to the fact that injury has occurred, ignoring information that is much less important for survival, such as the location of the injury. Some of the neural properties proposed to be critical for conscious pain in mammals …


The Influence Of Spines And Size Refuge On Predation Of Devonian Brachiopods From The Lime Creek Formation Near Rockford, Iowa, Broc S. Kokesh Mar 2015

The Influence Of Spines And Size Refuge On Predation Of Devonian Brachiopods From The Lime Creek Formation Near Rockford, Iowa, Broc S. Kokesh

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

Brachiopods are small invertebrates that live on the seafloor and are prominent in the fossil record from 540 to 250 million years ago. An interesting feature of some species is that large spines develop on their exterior surfaces. These spines are thought to have evolved for defense against predators, but fossils are limited in how much information they contain about how organisms interact with each other. In this study, I examined wound markings on fossils of both a spiny (Atrypa rockfordensis) and spineless (Atrypa devoniana) species of brachiopod. Results show that spiny brachiopods were less frequently …


An Examination Of The Phylogenetic Diversity Of Green Algae (Chlorophyceae) That Symbiose With Spotted Salamanders (Ambystoma Maculatum) In The Egg Stage., Crystal Xue May 2014

An Examination Of The Phylogenetic Diversity Of Green Algae (Chlorophyceae) That Symbiose With Spotted Salamanders (Ambystoma Maculatum) In The Egg Stage., Crystal Xue

Honors Scholar Theses

In 1909, the species Oophila amblystomatis Lambert ex Wille was described for green algae that symbiose with salamanders in the egg stage (Wille). There are two hypotheses about the source of algae: 1) that algae enter from the surrounding water once the egg clutch is laid in a pond, and 2) that they are acquired from the maternal reproductive tract. We developed a third hypothesis developed to account for the salamander reproductive cycle. Male salamanders lay spermatophores, which are protein-filled capsules, on plant matter in and around ponds. Spermatophores are exposed to the environment before use by females in internal …


A Virtual Phytosaur Endocast And Its Implications For Sensory System Evolution In Archosaurs, Waymon Holloway Jan 2011

A Virtual Phytosaur Endocast And Its Implications For Sensory System Evolution In Archosaurs, Waymon Holloway

Theses, Dissertations and Capstones

Due to the overall morphological similarities between the Triassic archosaurs of the order Phytosauria and extant crocodilians, most studies have assumed that the two shared similar lifestyles. Many studies involving phytosaurs have focused on the external cranial morphology of various taxa. Internal cranial anatomy has received relatively little attention. As a result, comparative morphology studies of the braincases interior, or endocast, of phytosaurs are an area of potential exploration. Just as modern medical Xray computed tomography (CT) can be used to create three-dimensional images of internal structures of living subjects, such technology offers a non-invasive means of studying the internal …


On The Enigmatic Distribution Of The Honduran Endemic Leptodactylus Silvanimbus (Amphibia: Anura: Lep Todactylidae), W. Ronald Heyer, Rafael O. De Sá, Sarah Muller Jan 2005

On The Enigmatic Distribution Of The Honduran Endemic Leptodactylus Silvanimbus (Amphibia: Anura: Lep Todactylidae), W. Ronald Heyer, Rafael O. De Sá, Sarah Muller

Biology Faculty Publications

Most species of the frog genus Leptodactylus occur in South America, and all authors who have treated the zoogeography of the genus have concluded that it originated somewhere in South America (e.g., Savage 1982). Savage (1982,518) summarized the historical herpetofaunal units of the Neotropics as follows: "All evidence points to an ancient contiguity and essential similarity of a generalized tropical herpetofauna that ranged over tropical North, Middle, and most of South America in Cretaceous-Paleocene times. Descendents of this fauna are represented today by the South and Middle American tracks (Elements). To the north of this fauna ranged a subtropical-temperate Laurasian …


Access To Another Mind: Naturalistic Theories Require Naturalistic Data, Mark A. Krause, Gordon Burghardt Dec 1999

Access To Another Mind: Naturalistic Theories Require Naturalistic Data, Mark A. Krause, Gordon Burghardt

Gordon Burghardt

If there is to be a natural theory of consciousness that would satisfy both philosophers and scientists, it must be based on naturalistic data and minimal clutter accumulated from semantic arguments. Carruthers offers a 'natural' theory of consciousness that is rather myopic. To explore the evolutionary basis of consciousness, a natural theory should include comparative psychological and neurological data that encompass nonlinguistic measures. Such an approach could provide a clearer picture of the adaptive function, mechanisms, and origins of consciousness.