Ecology and Evolutionary Biology Commons^™

Diving At High Altitude: O2 Transport And Utilization In The Ruddy Duck And Torrent Duck In The Andes, Kevin G. Mccracken, Graham R. Scott, Luis Alza, Andrea Astie, Ciska Bakkeren, Emil Bautista, Mariana Bulgarella, Rebecca Cheek G. Cheek, Beverly A. Chua, Neal J. Dawson, Alexis Diaz, Catherine M. Ivy, Peter B. Frappell, Cecilia Kopuchian, Sabine L. Laguë, John N. Maina, Violeta Muñoz-Fuentes, Elizabeth R. Schell, Matthew M. Smith, Ryan J. Sprenger, Pablo L. Tubaro, Elizabeth R. Schell, Matthew M. Smith, Ryan J. Sprenger, Pablo L. Tubaro, Thomas Valqui, Roy E. Weber, Daniela Wilner, Robert E. Wilson, Julia M. York, William K. Milsom

Occasional Papers of the Museum of Natural Science, Louisiana State University

Hypoxia and cold temperatures create unique physiological challenges for high-altitude organisms that can vary depending on lifestyle. While nearly all studies of air-breathing animals at high altitude are from terrestrial species, species that breath-hold dive underwater at high altitude encounter a very different set of selective pressures influencing their phenotype. The goal of this publication is to highlight the changes in O2 transport and utilization in high-altitude diving birds relative to divers at sea level, and the extent to which these changes are qualitatively distinct from phenotypic changes in non-diving species at high altitude. For example, while high capacities for …

History, Annotated Gazetteer, And Bibliography Of Sarawak Ornithology, Frederick H. Sheldon, Dency F. Gawain, Daisy G. S. Kho, Rosalina Regai, Subir B. Shakya, Chin Aik Yeap

Occasional Papers of the Museum of Natural Science, Louisiana State University

Sarawak is Malaysia’s largest state, covering most of northern Borneo. It has a remarkable history of scientific bird study, starting in the 1840s and growing ever since. To set the stage for the gazetteer, which is the core of this paper, we start with a review of this history and discuss various forces that have influenced the direction of bird research in the state. Following this introduction comes the gazetteer, which is an annotated list of c. 865 sites in Sarawak where birds have been collected, studied, or regularly observed. The gazetteer provides the latitude, longitude, and elevation of each …

Effects Of Riverine Barriers On Avian Evolution In The Amazon Basin, Andre Eugene Moncrieff

LSU Doctoral Dissertations

The high biodiversity found in the Amazon Basin has long captivated the attention of naturalists and evolutionary biologists seeking to explain its origins. Early observations by Alfred Wallace highlighted the role of rivers in delimiting the geographic ranges of many species; furthermore, where rivers narrow towards their headwaters, he noted that some species cross rivers freely. A major goal of this dissertation is to investigate how these and other observations about riverine barriers might inform our understanding of how speciation unfolds in Amazonia. My approach involved generating genomic data with dense geographic sampling for manakins in the genus Lepidothrix, …

Insights Into The Speciation Process From Genomic And Phenotypic Analysis Of An Avian Hybrid Zone In Amazonia, Glaucia Christina Del-Rio

LSU Doctoral Dissertations

Understanding the outcome of secondary contact is essential to shed light on the mechanisms governing species formation and maintenance. In Amazonia, closely related bird taxa with limited dispersal abilities are often separated by rivers, which presumably act as dispersal barriers. However, at the headwaters, rivers cease to be dispersal barriers, and this generates opportunities for secondary contact. In my dissertation, I studied genomic mechanisms associated with phenotypic differences, mitochondrial DNA structure, and putative reproductive barriers between two hybridizing Amazonian bird species in the genus Rhegmatorhina, a group of antbirds that find their arthropod prey exclusively by following army-ant swarms. …

Genetic Structuring And Community Assembly In Neotropical Birds, Oscar Johnson

LSU Doctoral Dissertations

The factors that influence how species form is of fundamental interest to biology. Under the framework of the speciation cycle, the process begins by population subdivision creating structured populations that then diverge until two new species form. Following speciation, however, continued divergence is necessary for these new species to be able to coexist without adverse interactions, known as the transition to secondary sympatry. At this point the speciation cycle is complete and the process can begin anew. Many of the factors influencing these processes remain poorly understood. Here, I explore the factors that influence speciation and community assembly in Neotropical …

Leveraging Multiple Data Sources: How Catch Data, Metadata, And Genetic Samples Can Aid The Recovery Of Endangered Smalltooth Sawfish (Pristis Pectinata), Kelcee Smith

LSU Doctoral Dissertations

The small population sizes characteristic of many imperiled species means that they are vulnerable to both demographic and genetic extinction threats. Responses to these threats (e.g., population trends, genetic diversity estimates) are often difficult to obtain, but critical for conservation. Thus, researchers studying imperiled species may have to consult multiple data sources, collaborate with a wide variety of stakeholders, or ask new questions about previously collected data. I used this approach to understand more about the United States (U.S.) population of Pristis pectinata, an endangered elasmobranch that has declined up to 95% due to habitat loss and bycatch in …

Henry V. Howe And His Collection Of Foraminifera At Louisiana State University, Lorene E. Smith, Baren K. Sen Gupta

Occasional Papers of the Museum of Natural Science, Louisiana State University

Henry V. Howe, the founder of the current academic program in geology at Louisiana State University (LSU), and a renowned ostracod specialist, was also a distinguished foraminiferal paleontologist. His best work in that field, involving the discovery of many new species, was on the taxonomy of Eocene Foraminifera of Louisiana. The present H.V. Howe Type Collection of Microfossils began with Howe’s gift of slides to LSU. This collection, enriched by contributions from later workers, now includes over 580 slides of foraminiferal primary type specimens, with holotypes and syntypes of 361 species and 15 taxa labeled as “varieties.” Information regarding these …

Micro- And Macroevolution Of Drab Plumage Color In Birds, Rafael Marcondes

LSU Doctoral Dissertations

I address the evolution of drab bird colors at micro- and macroevolutionary scales. I use as a study system the Furnariida, a clade of >600 Neotropical passerine species that, despite tremendous ecological and morphological diversity, are colored almost exclusively in shades of brown and grey produced by melanin pigments.

In chapters two and three, I took a macroevolutionary approach and showed that (1) plumage colors in the Furnariida evolve at similar rates in a monochromatic clade, males of a dichromatic clade, and females of a dichromatic clade; (2) ventral plumage color evolves faster than dorsal; (3) bird species that occupy …

Quantifying Structure And Variation In Complex Phylogenetic Data, Genevieve Geraldine Mount

LSU Doctoral Dissertations

Identifying the source and structure of variation in nature is crucial to understanding fundamental aspects of evolution. Despite a recent plethora of genetic and morphological data, many interesting questions about the relationships between different groups remain unresolved. My dissertation evaluates three approaches for identifying and quantifying the variation within phylogenetic datasets. Characterizing variation within datasets and across analytical methods gives insight into biologically interesting characters, unusual evolutionary processes, and areas for model improvement.

Network-based community detection approaches offer a powerful tool to describe variation in phylogenetic signal across the genome (i.e., gene tree variation). In Chapter 2, I investigate the …

The Evolution Of Bivalve Shell Matrix Proteins, Mark Ira Duhon Ii

LSU Doctoral Dissertations

This dissertation focuses on the molecular underpinnings surrounding the evolution of the biomineralized shells of marine bivalves. Bivalve molluscs synthesize remarkably complex shells from calcium carbonate and an organic matrix of proteins secreted from the dorsal edge of the mantle. Molecular analyses of shell matrix proteins (SMPs) have suggested high rates of gene turnover despite the conserved nature of the shell itself. Here, I used proteomic and transcriptomic data to identify the SMPs and other biomineralization proteins from seven bivalve species that diverged 3-513 Mya. Contrary to previous studies that identified only a few shared biomineralization transcripts across the Bivalvia, …

Natural Variation And Evolutionary Responses To Climate Change Stressors In Marine Invertebrates, Joanna Sarah Griffiths

LSU Doctoral Dissertations

Our rapidly changing climate is putting many species at risk of extinction and there is an urgent need to understand how species will respond to these changes. In this dissertation, I evaluate how three species of marine invertebrates (corals, oysters, and copepods) respond to stressful conditions in their current environments and how plasticity and evolutionary adaptation could alter their response to future climate change stressors. I first employed a space for time study to elucidate population differences in the response of cold-water corals, Balanophyllia elegans, to future ocean acidification. I found evidence that upwelling history (natural low pH exposure) influences …

Ornithological Expeditions To Sarawak, Malaysian Borneo, 2007-2017, Frederick H. Sheldon, Haw Chuan Lim, Phred M. Benham, Matthew L. Brady, Clare E. Brown, Ryan C. Burner, Vivien L. Chua, John C. Mittermeier, Subir B. Shakya, Paul Van Els, Mustafa Abdul Rahman, Dency F. Gawin, Zahirunisa Abdul Rahim, Luisa Duya Setia, Robert Moyle

Occasional Papers of the Museum of Natural Science, Louisiana State University

Louisiana State University, the University of Kansas, and the Universiti Malaysia Sarawak undertook collaborative research on the evolution and ecology of Bornean birds starting in 2005. This collaboration included a series of expeditions from 2007–2017 to collect and study birds at >30 sites in Sarawak, Malaysian Borneo. Here we provide information on the study-sites and summarize the main discoveries resulting from the collaboration.

Speciation And Hybridization In Jamaican-Endemic Streamertail Hummingbirds (Trochilus Polytmus And T. Scitulus), Caroline D. Judy

LSU Doctoral Dissertations

Streamertails hummingbirds (Trochilus polytmus and T. scitulus) are recently diverged sister taxa that appear to have speciated in situ on the island of Jamaica. They are distinguished by male bill color, a secondary sexual trait that is coral red in T. polytmus and jet black in T. scitulus. They hybridize in a narrow zone where their ranges meet in eastern Jamaica. In Chapter 2, I performed a formal population survey of T. scitulus to determine the size of the population, which was unknown. I determined that the total population contains well over 100,000 individuals despite its limited …

A Review Of Current Knowledge Concerning The Breeding And Summer Distribution Of The Cordilleran Flycatcher (Empidonax Occidentalis) In Mexico, Harold F. Greeney, Matthew J. Miller, Charles Van Riper Iii

Occasional Papers of the Museum of Natural Science, Louisiana State University

The Cordilleran Flycatcher (Empidonax occidentalis) is one of many North American birds whose distribution crosses the US–Mexican border and for which little is presently known about summer distribution and breeding biology south of this border. In addition, the Cordilleran Flycatcher presents ornithologists with a number of challenging questions surrounding its taxonomy, migration, distribution, population structure, and species limits. In particular, there remains a good deal of uncertainty concerning the species-level relationships, seasonal movements, and the wintering and breeding distributions of both recognized subspecies of Cordilleran Flycatcher in Mexico. Using field observations, a thorough review of the literature, and …

Computational Analysis Of Papionini Evolution Using Alu Insertions, Vallmer Edward Jordan Ii

LSU Doctoral Dissertations

Alu elements are primate specific retrotransposons that have remained active throughout the course of primate evolution. As a result of this sustained mobilization. Alu elements are present in greater copy number in primate genomes than any other transposable element. An average of over one million Alu elements has been identified in every sequenced haplorrhine genome to date. These characteristics qualify Alu elements as ideal characters for studying evolutionary relationship among primates.

The increasing availability of whole genome sequencing data presents novel challenges and opportunities for comparative genomic analyses. Genomic data is now publicly available for most primate species. Such an …

First Record Of The Non-Native Pacu, Piaractus Brachypomus, In Lago Petén-Itzá, Guatemala, Central America, Diego J. Elias, Susan F. Mochel, Prosanta Chakrabarty, Caleb D. Mcmahan

Occasional Papers of the Museum of Natural Science, Louisiana State University

We documented the first record of the non-native species Piaractus brachypomus (Characiformes: Serrasalmidae) in Lago Petén-Itzá, Petén, Guatemala. One brined specimen was donated by a local fisherman in San Benito, El Petén. The captured specimen was reportedly collected in the southern basin of the lake. We used the mitochondrial gene cytochrome oxidase I (COI) to validate identity of the specimen. We hypothesize that the local aquarium trade is the most likely source of introduction of the non-native Pacu in Lago Petén-Itzá.

Documentamos el primer registro de la especie no nativa Piaractus brachypomus (Characiformes: Serrasalmidae) en el lago Petén Itzá, Petén, …

Determining Bioindicators For Coastal Tidal Marsh Health Using The Food Web Of Larvae Of The Greenhead Horse Fly (Tabanus Nigrovittatus), Devika Rajeev Bhalerao

LSU Master's Theses

The greenhead horse fly Tabanus nigrovittatus Macquart is native to coastal marshlands from Texas to Nova Scotia. The larvae are apex invertebrate predators and their development is dependent on the food web in the soil. Surveillance of T. nigrovittatus after the 2010 Deepwater Horizon oil spill in the Gulf of Mexico showed population crashes of adults in the coastal marshes of East Louisiana near places where oil made landfall, but not in West Louisiana where the oil did not reach. Sediment collection in 2011 from West and East Louisiana revealed larval population crashes in the Eastern coastal region. We hypothesized …

First Record Of The Non-Native Suckermouth Armored Catfish Hypostomus Cf. Niceforoi (Fowler 1943) (Siluriformes: Loricariidae) From Central America, Wilfredo A. Matamoros, Caleb D. Mcmahan, Carlos R. Mejia, Parker H. House, Jonathan W. Armbruster, Prosanta Chakrabarty

Occasional Papers of the Museum of Natural Science, Louisiana State University

We document the first record of Hypostomus cf. niceforoi in Central America. Two specimens of these suckermouth armored catfishes were collected in Lake Nicaragua (Nicaragua) and identified as H. cf. niceforoi. Hypostomus niceforoi is endemic to Andean streams of Colombia, Venezuela, Ecuador, and Peru. We hypothesize that its introduction in Central America is related to the aquarium trade, as is the case of other armored catfish species introductions.

Gazetteer And Site-Based History Of The Ornithology Of Sabah. Malaysian Borneo, Frederick H. Sheldon

Occasional Papers of the Museum of Natural Science, Louisiana State University

The gazetteer lists sites in the state of Sabah, Malaysia, where birds have been collected, studied, or watched. Its purpose is to identify locations for research and birding in Sabah and to provide a brief scientific history of the more important sites. Each site description includes latitude, longitude, and general information on location. For many sites, elevation, habitat, scientific or birdwatching importance, historical notes, citations of key papers, specimen records, and records of certain species are also included.

A Consensus Taxonomy For The Hawaiian Honeycreepers, H. Douglas Pratt

Occasional Papers of the Museum of Natural Science, Louisiana State University

No abstract provided.

Comments On Some African Taxa Of Leptotyphlopid Snakes, Jeff Boundy

Occasional Papers of the Museum of Natural Science, Louisiana State University

Miscellaneous material of African Leptotyphlopidae are discussed: An overlooked senior synonym of Namibiana latifrons, mental scale characteristics in Tricheilostoma greenwelli, an insular record of Leptotyphlops pembae, a range expansion of Myriopholis adleri (new to the country of Ghana), and cephalic scale terminology of Rhinoleptus koniagui.

Birds In Peatswamp At Klias Forest Reserve And Environs, Sabah, Malaysian Borneo, Frederick H. Sheldon, Geoffrey Davison, Anna Wong, Robert G. Moyle

Occasional Papers of the Museum of Natural Science, Louisiana State University

Periodically from 1998-2004, we surveyed birds in the Klias Forest Reserve, which is one of the last remaining pockets of peatswamp in western Sabah. We report here on those surveys. We also review prior work on birds in peatswamp and swamp forest in the Klias-Sipitang region of Sabah as it relates to the conservation of habitat and birds specialized on peatswamp. Peatswamp forest is in jeopardy from development and fires throughout Borneo, and particularly in the Malaysian State of Sabah, which had very little to start. Peatswamp in the Klias area is of particular importance for conservation and bird watching …

Notes On The Avifauna Of The Floodplain Forest Of The Rio Mamoré, Beni, Bolivia, With A Description Of The Juvenile Plumage Of Unicolored Thrush (Turdus Haplochrous) (Aves: Turdidae), Ryan S. Terrill, Miguel Angel Aponte Justiniano, Michael G. Harvey, Glenn F. Seeholzer, Rosa Ines Strem

Occasional Papers of the Museum of Natural Science, Louisiana State University

Notes on the avifauna of the floodplain forest of the Rio Mamoré, Beni, Bolivia, with a description of the Juvenile plumage of Unicolored Thrush (Turdus haplochrous) – The floodplain forest along the Rio Mamoré is an isolated stretch of riverine forest in the matrix of flooded grassland and gallery forest of the Llanos de Moxos in the department of Beni, Bolivia and contains an understudied avifauna. This habitat potentially represents a stronghold for certain bird taxa. During Dec 2010-Jan 2011, we conducted daily audiovisual censuses, targeted collecting with shotguns, and general collecting with mist-nets for birds at a …

Notes On Bird Species In Bamboo In Northern Madre De Dios, Peru, Including The First Peruvian Record Of Acre Tody-Tyrant (Hemitriccus Cohnhafti), Michael G. Harvey, Daniel F. Lane, Justin Hite, Ryan S. Terrill, Sheila Figueroa Ramírez, Brian Tilston Smith, John Klicka, Walter Vargas Campos

Occasional Papers of the Museum of Natural Science, Louisiana State University

In the southwestern Amazon Basin, large areas of habitat are comprised predominantly of Guadua bamboo. Many bird species occur in or specialize on Guadua-dominated habitats, but little is known about the taxonomy, distribution, and evolutionary history of this avian assemblage. During 2011, we surveyed the surroundings of Iberia, an area with many large Guadua stands in the southern Peruvian Amazon. We found many Guadua specialist bird species and discovered a surprising Andean element to the local avifauna. We present information on Guadua specialists, Andean species, birds of open habitats, and avian migration and reproduction. We provide accounts for species …

Characterization Of Aebp2 Mutant Mice, Arundhati Bakshi

Honors Theses

No abstract provided.

Staffan Müller-Wille And Hans-Jörg Rheinberger, A Cultural History Of Heredity, Charles H. Pence

Faculty Publications

No abstract provided.

A Path To Success? A Review Of Evolution, Development, And The Predictable Genome By David L. Stern, Hope Hollocher, Charles H. Pence, Grant Ramsey, Michelle M. Wirth

Faculty Publications

No abstract provided.

A Checklist Of The Amphibians And Reptiles Of México, Ernest A. Liner

Occasional Papers of the Museum of Natural Science, Louisiana State University

No abstract provided.

Species Limits Within The Mexican Garter Snakes Of The Thamnophis Godmani Complex, Douglas A. Rossman, Frank T. Burbrink

Occasional Papers of the Museum of Natural Science, Louisiana State University

The highly variable Thamniphis godmani complex of southern Mexico, comprised of four apparently allopatric populations, was examined by using 28 morphological characters scored on 214 specimens. Character values were tested with univariate and multivariate statistics to determine if populations are morphologically distinct. The results suggest that the four populations represent independently evolving lineages. Four species, three previously undescribed, are recognized in the T. godmani complex. A lectotype is designated for T. godmani. For each species, a diagnosis description of holotype or lectotype, summary of interspecific variation, and statement of distribution are provided. Comparisons are made with T. errans, alleged to …

Variations In The Xenodontid Water Snake Helicops Scalaris Jan, And The Status Of H. Hogei Lancini, Douglas A. Rossman

Occasional Papers of the Museum of Natural Science, Louisiana State University

No abstract provided.