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Articles 1 - 30 of 39
Full-Text Articles in Biology
On The Importance Of Sequence Alignment Inspections In Plastid Phylogenomics – An Example From Revisiting The Relationships Of The Water-Lilies, Jessica A. Roestel, John H. Wiersema, Robert K. Jansen, Thomas Borsch, Michael Gruenstaeudl
On The Importance Of Sequence Alignment Inspections In Plastid Phylogenomics – An Example From Revisiting The Relationships Of The Water-Lilies, Jessica A. Roestel, John H. Wiersema, Robert K. Jansen, Thomas Borsch, Michael Gruenstaeudl
Biological Sciences Faculty Publications
The water-lily clade represents the second earliest-diverging branch of angiosperms. Most of its species belong to Nymphaeaceae, of which the “core Nymphaeaceae”—comprising the genera Euryale, Nymphaea and Victoria—is the most diverse clade. Despite previous molecular phylogenetic studies on the core Nymphaeaceae, various aspects of their evolutionary relationships have remained unresolved. The length-variable introns and intergenic spacers are known to contain most of the sequence variability within the water-lily plastomes. Despite the challenges with multiple sequence alignment, any new molecular phylogenetic investigation on the core Nymphaeaceae should focus on these noncoding plastome regions. For example, a new plastid phylogenomic study on …
Freshwater Mussels Of Kansas: Register Of Taxa, Synonyms, And Assumed Misidentifications, Mark E. Eberle
Freshwater Mussels Of Kansas: Register Of Taxa, Synonyms, And Assumed Misidentifications, Mark E. Eberle
Biological Sciences Faculty Publications
The literature on freshwater mussels (Mollusca: Margaritiferidae and Unionidae) of Kansas includes a collection of names of species and subspecies that makes it difficult for even experienced malacologists to decipher which taxa actually were collected. Compounding this problem is the absence of voucher specimens for some of the studies conducted in the state. This list was compiled to aid those who are conducting research and want to assess their results with reference to the earlier accounts. The alphabetical list of valid taxa, synonyms, and assumed misidentifications of freshwater mussels of Kansas is drawn from the literature and not an examination …
Transforming Entomology To Adapt To Global Concerns: 2021 Student Debates, Patricia Prade, Ramandeep Kaur Sandhi, Sarah Elzay, Katherine Arnold, Victoria Pickens, Andrew Freedman, Dashae Dillard, Sean Gresham, Ashley Morris, Daniela Pezzini, Seum O. Oladipupo, Elijah P. Carroll, Richard O. Murphy, Festus K. Ajibefun, Luis M. Mendez, Katherine Carroll, Jasleen Kaur, Lillie M. Rooney, Kendall Stacey, Yasmin Tavares, Jared E. Dyer, Na Xie, Jason Bielski, John Schepis, Kayleigh C. Hauri, John J. Ternest, Jacob Pecenka, Scott W. Gula, Natalie Constancio, Emily Rampone, Mario Luppino, Dowen Jocson, Stephen Onayemi, Emily Rendleman
Transforming Entomology To Adapt To Global Concerns: 2021 Student Debates, Patricia Prade, Ramandeep Kaur Sandhi, Sarah Elzay, Katherine Arnold, Victoria Pickens, Andrew Freedman, Dashae Dillard, Sean Gresham, Ashley Morris, Daniela Pezzini, Seum O. Oladipupo, Elijah P. Carroll, Richard O. Murphy, Festus K. Ajibefun, Luis M. Mendez, Katherine Carroll, Jasleen Kaur, Lillie M. Rooney, Kendall Stacey, Yasmin Tavares, Jared E. Dyer, Na Xie, Jason Bielski, John Schepis, Kayleigh C. Hauri, John J. Ternest, Jacob Pecenka, Scott W. Gula, Natalie Constancio, Emily Rampone, Mario Luppino, Dowen Jocson, Stephen Onayemi, Emily Rendleman
Biological Sciences Faculty Publications
The 2021 Student Debates of the Entomological Society of America (ESA) were held at the Annual Meeting in Denver, CO. The event was organized by the Student Debates Subcommittee (SDS) of the Student Affairs Committee (SAC). The theme of the 2021 Student Debates was “Transforming Entomology to Adapt to Global Concerns”, with 3 topics. Each topic had an unbiased introduction and 2 teams. The debate topics were (i) Nonnative insect introduction is an ethical approach for counteracting proliferation and overpopulation of consumers, (ii) What is the best technology to control undesirable insect pests in urban and agricultural settings? and (iii) …
Quantitative Study Of Aphid Natural Enemies In Central Oklahoma Canola Fields, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay
Quantitative Study Of Aphid Natural Enemies In Central Oklahoma Canola Fields, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay
Biological Sciences Faculty Publications
Winter canola (Brassica napus L.) is planted in late September through October in central Oklahoma and harvested in June. Three aphid species typically infest canola fields in central Oklahoma: cabbage aphid, Brevicoryne brassicae L.; green peach aphid, Myzus persicae (Sulzer); and turnip aphid, Lipaphis pseudobrassicae (Davis). Predatory insects and spiders and hymenopteran parasitoids that prey on aphids are present in canola fields in central Oklahoma. We used a D-vac suction device to sample aphids and natural enemies in a total of 23 canola fields in central Oklahoma in early November and mid-March of three growing seasons. During the three …
Role Of Parasitoids And Landscape Structure In Aphid Population Dynamics In Winter Canola, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay, Georges F. Backoulou
Role Of Parasitoids And Landscape Structure In Aphid Population Dynamics In Winter Canola, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay, Georges F. Backoulou
Biological Sciences Faculty Publications
Three aphid species infest winter canola, Brassica napus L. fields in central Oklahoma and are serious pests: the cabbage aphid, Brevicoryne brassicae L., green peach aphid, Myzus persicae (Sulzer), and turnip aphid, Lipaphis pseudobrassicae (Davis). Mortality caused by parasitoids may be an important component of biological control of aphids in Oklahoma canola fields. Therefore, it is important to determine the effect of parasitoids on aphids in canola and the factors that affect it. We undertook a study during three consecutive growing seasons to: 1) estimate aphid suppression by parasitoids in each of 23 canola fields using cages that excluded natural …
Entomology Beyond Research And Education: 2022 Student Debates, Ramandeep Kaur Sandhi, Victoria Pickens, Elizabeth Bello, Sarah Elzay, Sara Salgado, Kayleigh C. Hauri, John J. Ternest, Natalie Constancio, Scott Gula, Olivia M. Gearner, Magdeline Anderson, Molly Edeburn, Brandon Hall, Jacqueline Maille, Mollie Toth, Arjun Khadka, Ethan Doherty, Tyler Musgrove, Tiago Silva, Alexia Desoto, Emily Rampone, Dowen Jocson, Mario Luppino, Kellen Pautzke, Camille Wagstaff
Entomology Beyond Research And Education: 2022 Student Debates, Ramandeep Kaur Sandhi, Victoria Pickens, Elizabeth Bello, Sarah Elzay, Sara Salgado, Kayleigh C. Hauri, John J. Ternest, Natalie Constancio, Scott Gula, Olivia M. Gearner, Magdeline Anderson, Molly Edeburn, Brandon Hall, Jacqueline Maille, Mollie Toth, Arjun Khadka, Ethan Doherty, Tyler Musgrove, Tiago Silva, Alexia Desoto, Emily Rampone, Dowen Jocson, Mario Luppino, Kellen Pautzke, Camille Wagstaff
Biological Sciences Faculty Publications
The 2022 student debates of the Entomological Society of America (ESA) happened during the Joint Annual Meeting of the Entomological Societies of America, Canada, and British Columbia in Vancouver, BC, and addressed entomological aspects beyond research and education. The Student Debates Subcommittee of the ESA Student Affairs Committee and the participating student team members communicated for 8 months and prepared for the debates. The theme of the ESA meeting in 2022 was “Entomology as inspiration: Insects through art, science, and culture”. There were 2 unbiased speakers who introduced the debate topics as well as 4 teams who debated the following …
Software Choice And Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study In The Narrow Endemic Calligonum Bakuense, Eka Giorgashvili, Katja Reichel, Calvinna Caswara, Vuqar Kerimov, Thomas Borsch, Michael Gruenstaeudl
Software Choice And Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study In The Narrow Endemic Calligonum Bakuense, Eka Giorgashvili, Katja Reichel, Calvinna Caswara, Vuqar Kerimov, Thomas Borsch, Michael Gruenstaeudl
Biological Sciences Faculty Publications
Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study, we test the impact of both factors on plastid genome assembly in the threatened and rare endemic shrub Calligonum bakuense. We aim to characterize the differences across plastid genome assemblies generated by different assembly software tools and levels of sequencing coverage and to determine if these differences are large enough to affect the phylogenetic position inferred for C. bakuense compared to congeners. …
Roles Matter: Graduate Student Perceptions Of Active Learning In The Stem Courses They Take And Those They Teach, Lorelei E. Patrick, Leigh Ann Howell, Everett William Wischusen
Roles Matter: Graduate Student Perceptions Of Active Learning In The Stem Courses They Take And Those They Teach, Lorelei E. Patrick, Leigh Ann Howell, Everett William Wischusen
Biological Sciences Faculty Publications
Despite many calls to reform undergraduate science, technology, engineering, and math (STEM) education to incorporate active learning into classes, there has been little attention paid to graduate level classrooms or courses taught by graduate students. Here, we set out to understand if and how STEM graduate students’ perceptions of active learning change in the classes they take versus those they teach. We found that graduate students had taken relatively few graduate level classes using active learning and they felt that more time should be devoted to active learning in the courses they were taking. Teaching assistants felt that they were …
Using A Self-Determination Theory Approach To Understand Student Perceptions Of Inquiry-Based Learning, Fangfang Zhao, Gillian Roehrig, Lorelei E. Patrick, Chantal Levesque-Bristol, Sehoya Cotner
Using A Self-Determination Theory Approach To Understand Student Perceptions Of Inquiry-Based Learning, Fangfang Zhao, Gillian Roehrig, Lorelei E. Patrick, Chantal Levesque-Bristol, Sehoya Cotner
Biological Sciences Faculty Publications
Inquiry-based laboratory activities, as a part of science curricula, have been advocated to increase students’ learning outcomes and improve students’ learning experiences, but students sometimes struggle with open-inquiry activities. This study aims to investigate students’ perceptions of inquiry-based learning in a set of laboratory activities, specifically from a psychological (i.e., Self-Determination Theory) perspective. Students’ ratings of the level of inquiry in these activities indicate that students’ perceptions of inquiry align with the instructor-intended amount of inquiry in each exercise. Students’ written responses, explaining their ratings, indicate that students’ perceptions of the amount of inquiry in a given lab exercise relate …
Graduate- And Undergraduate-Student Perceptions Of And Preferences For Teaching Practices In Stem Classrooms, Ngawang Gonsar, Lorelei E. Patrick, Sehoya Cotner
Graduate- And Undergraduate-Student Perceptions Of And Preferences For Teaching Practices In Stem Classrooms, Ngawang Gonsar, Lorelei E. Patrick, Sehoya Cotner
Biological Sciences Faculty Publications
Despite positive evidence for active learning (AL), lecturing dominates science, technology, engineering, and mathematics (STEM) higher education. Though instructors acknowledge AL to be valuable, many resist implementing AL techniques, citing an array of barriers including a perceived lack of student buy-in. However, few studies have explored student perceptions of specific AL teaching practices, particularly the perceptions of graduate students. We explored student-reported instructional strategies and student perceptions of and preferences for a variety of teaching practices in graduate and undergraduate classrooms across three STEM colleges at a large, public, research university. We found that both graduate and undergraduate students desired …
Building Excellence In Scientific Teaching: How Important Is The Evidence For Evidence-Based Teaching When Training Stem Tas?, Lorelei E. Patrick, Hillary A. Barron, Julie C. Brown, Sehoya Cotner
Building Excellence In Scientific Teaching: How Important Is The Evidence For Evidence-Based Teaching When Training Stem Tas?, Lorelei E. Patrick, Hillary A. Barron, Julie C. Brown, Sehoya Cotner
Biological Sciences Faculty Publications
Evidence-based teaching practices (EBTP)—like inquiry-based learning, inclusive teaching, and active learning (AL)—have been shown to benefit all students, especially women, first-generation, and traditionally minoritized students in science fields. However, little research has focused on how best to train teaching assistants (TAs) to use EBTP or on which components of professional development are most important. We designed and experimentally manipulated a series of presemester workshops on AL, dividing subjects into two groups. The Activity group worked in teams to learn an AL technique with a workshop facilitator. These teams then modeled the activity, with their peers acting as students. In the …
Plastid Phylogenomics Of The Gynoxoid Group (Senecioneae, Asteraceae) Highlights The Importance Of Motif-Based Sequence Alignment Amid Low Genetic Distances, Belen Escobari, Thomas Borsch, Taylor Quedensley, Michael Gruenstaeudl
Plastid Phylogenomics Of The Gynoxoid Group (Senecioneae, Asteraceae) Highlights The Importance Of Motif-Based Sequence Alignment Amid Low Genetic Distances, Belen Escobari, Thomas Borsch, Taylor Quedensley, Michael Gruenstaeudl
Biological Sciences Faculty Publications
Premise The genus Gynoxys and relatives form a species-rich lineage of Andean shrubs and trees with low genetic distances within the sunflower subtribe Tussilaginineae. Previous molecular phylogenetic investigations of the Tussilaginineae have included few, if any, representatives of this Gynoxoid group or reconstructed ambiguous patterns of relationships for it. Methods We sequenced complete plastid genomes of 21 species of the Gynoxoid group and related Tussilaginineae and conducted detailed comparisons of the phylogenetic relationships supported by the gene, intron, and intergenic spacer partitions of these genomes. We also evaluated the impact of manual, motif-based adjustments of automatic DNA sequence alignments on …
Airpg: Automatically Accessing The Inverted Repeats Of Archived Plastid Genomes, Tilman Mehl, Michael Gruenstaeudl
Airpg: Automatically Accessing The Inverted Repeats Of Archived Plastid Genomes, Tilman Mehl, Michael Gruenstaeudl
Biological Sciences Faculty Publications
In most flowering plants, the plastid genome exhibits a quadripartite genome structure, comprising a large and a small single copy as well as two inverted repeat regions. Thousands of plastid genomes have been sequenced and submitted to public sequence repositories in recent years. The quality of sequence annotations in many of these submissions is known to be problematic, especially regarding annotations that specify the length and location of the inverted repeats: such annotations are either missing or portray the length or location of the repeats incorrectly. However, many biological investigations employ publicly available plastid genomes at face value and implicitly …
Quantitative Assessment Of Aphid Parasitoids And Predators In Central Oklahoma Wheat Fields During Five Growing Seasons, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay
Quantitative Assessment Of Aphid Parasitoids And Predators In Central Oklahoma Wheat Fields During Five Growing Seasons, Norman C. Elliott, Kristopher L. Giles, Kristen A. Baum, Sarah Elzay
Biological Sciences Faculty Publications
Winter wheat (Triticum aestivum L.) is the most widely grown crop in Oklahoma and typically is planted in autumn and harvested in June. Wheat in Oklahoma is often infested by insect pests, the most important of which are the cereal aphids – greenbug, Schizaphis graminum (Rondani), and bird cherry-oat aphid, Rhopalosiphum padi (L.). We sampled a total of 69 wheat fields in central Oklahoma during five wheat-growing seasons. The number of wheat fields sampled ranged from seven in the 2016-2017 growing season to 24 fields in the 2009-2010 growing season. We used a D-vac suction sampler to collect aphids …
Adaptive Genetic Potential And Plasticity Of Trait Variation In The Foundation Prairie Grass Andropogon Gerardii Across The Us Great Plains’ Climate Gradient: Implications For Climate Change And Restoration, Matthew Galliart, Sofia Sabates, Hannah Tetreault, Angel Delacruz, Johnny Bryant, Jake Alsdurf, Mary Knapp, Nora M. Bello, Sara G. Baer, Brian R. Maricle Ph.D., David J. Gibson, Jesse Poland, Paul St Amand, Natalie Unruh, Olivia Parrish, Loretta Johnson
Adaptive Genetic Potential And Plasticity Of Trait Variation In The Foundation Prairie Grass Andropogon Gerardii Across The Us Great Plains’ Climate Gradient: Implications For Climate Change And Restoration, Matthew Galliart, Sofia Sabates, Hannah Tetreault, Angel Delacruz, Johnny Bryant, Jake Alsdurf, Mary Knapp, Nora M. Bello, Sara G. Baer, Brian R. Maricle Ph.D., David J. Gibson, Jesse Poland, Paul St Amand, Natalie Unruh, Olivia Parrish, Loretta Johnson
Biological Sciences Faculty Publications
Plant response to climate depends on a species’ adaptive potential. To address this, we used reciprocal gardens to detect genetic and environmental plasticity effects on phenotypic variation and combined with genetic analyses. Four reciprocal garden sites were planted with three regional ecotypes of Andropogon gerardii, a dominant Great Plains prairie grass, using dry, mesic, and wet ecotypes originating from western KS to Illinois that span 500–1,200 mm rainfall/year. We aimed to answer: (a) What is the relative role of genetic constraints and phenotypic plasticity in controlling phenotypes? (b) When planted in the homesite, is there a trait syndrome for each …
Annonex2embl: Automatic Preparation Of Annotated Dna Sequences For Bulk Submissions To Ena, Michael Gruenstaeudl
Annonex2embl: Automatic Preparation Of Annotated Dna Sequences For Bulk Submissions To Ena, Michael Gruenstaeudl
Biological Sciences Faculty Publications
The submission of annotated sequence data to public sequence databases constitutes a central pillar in biological research. The surge of novel DNA sequences awaiting database submission due to the application of next-generation sequencing has increased the need for software tools that facilitate bulk submissions. This need has yet to be met with the concurrent development of tools to automate the preparatory work preceding such submissions.The author introduce annonex2embl, a Python package that automates the preparation of complete sequence flatfiles for large-scale sequence submissions to the European Nucleotide Archive. The tool enables the conversion of DNA sequence alignments that are co-supplied …
Pacvr: Plastome Assembly Coverage Visualization In R, Michael Gruenstaeudl, Nils Jenke
Pacvr: Plastome Assembly Coverage Visualization In R, Michael Gruenstaeudl, Nils Jenke
Biological Sciences Faculty Publications
Plastid genomes typically display a circular, quadripartite structure with two inverted repeat regions, which challenges automatic assembly procedures. The correct assembly of plastid genomes is a prerequisite for the validity of subsequent analyses on genome structure and evolution. The average coverage depth of a genome assembly is often used as an indicator of assembly quality. Visualizing coverage depth across a draft genome is a critical step, which allows users to inspect the quality of the assembly and, where applicable, identify regions of reduced assembly confidence. Despite the interplay between genome structure and assembly quality, no contemporary, user-friendly software tool can …
Reassessment Of The Triassic Archosauriform Scleromochlus Taylori: Neither Runner Nor Biped, But Hopper, S. Christopher Bennett Ph.D.
Reassessment Of The Triassic Archosauriform Scleromochlus Taylori: Neither Runner Nor Biped, But Hopper, S. Christopher Bennett Ph.D.
Biological Sciences Faculty Publications
The six known specimens of Scleromochlus taylori and casts made from their negative impressions were examined to reassess the osteological evidence that has been used to interpret Scleromochlus’s locomotion and phylogenetic relationships. It was found that the trunk was dorsoventrally compressed. The upper temporal fenestra was on the lateral surface of skull and two-thirds the size of the lower, the jaw joint posteriorly placed with short retroarticular process, and teeth short and subconical, but no evidence of external nares or antorbital fossae was found. The posterior trunk was covered with ~20 rows of closely spaced transversely elongate dorsal osteoderms. The …
Adding Value To A Field-Based Course With A Science Communication Module On Local Perceptions Of Climate Change, Lorelei E. Patrick, Seth Thompson, Aud Halbritter, Brian J. Enquist, Vigdis Vandvik, Sehoya Cotner
Adding Value To A Field-Based Course With A Science Communication Module On Local Perceptions Of Climate Change, Lorelei E. Patrick, Seth Thompson, Aud Halbritter, Brian J. Enquist, Vigdis Vandvik, Sehoya Cotner
Biological Sciences Faculty Publications
Field courses, while generally considered as beneficial for students, are challenging to implement and can lead to strained relationships between local residents and visiting scientists. Thus, it is critical to both maximize the educational value of field courses and help students develop contextualized science communication skills. We report on the development of a science communication module, integrated into an existing field-based ecology course, which aims to add value to an international field course enrolling students from multiple countries. Specifically, students surveyed local residents about their knowledge and perceptions of climate change, and then discussed their findings.
Embl2checklists: A Python Package To Facilitate The User-Friendly Submission Of Plant And Fungal Dna Barcoding Sequences To Ena, Michael Gruenstaeudl, Yannick Hartmaring
Embl2checklists: A Python Package To Facilitate The User-Friendly Submission Of Plant And Fungal Dna Barcoding Sequences To Ena, Michael Gruenstaeudl, Yannick Hartmaring
Biological Sciences Faculty Publications
Background The submission of DNA sequences to public sequence databases is an essential, but insufficiently automated step in the process of generating and disseminating novel DNA sequence data. Despite the centrality of database submissions to biological research, the range of available software tools that facilitate the preparation of sequence data for database submissions is low, especially for sequences generated via plant and fungal DNA barcoding. Current submission procedures can be complex and prohibitively time expensive for any but a small number of input sequences. A user-friendly software tool is needed that streamlines the file preparation for database submissions of DNA …
Preliminary Pcr-Based Screening Indicates A Higher Incidence Of Porcine Endogenous Retrovirus Subtype C (Perv-C) In Feral Versus Domestic Swine, Rashmi Acharya, Zoey K. Wallis, Robert Keener, Eric T. Gillock Ph.D.
Preliminary Pcr-Based Screening Indicates A Higher Incidence Of Porcine Endogenous Retrovirus Subtype C (Perv-C) In Feral Versus Domestic Swine, Rashmi Acharya, Zoey K. Wallis, Robert Keener, Eric T. Gillock Ph.D.
Biological Sciences Faculty Publications
Xenotransplantation is considered a potential alternative to allotransplantation to relieve the current shortage of human organs. Due to their similar size and physiology, the organs of pigs are of particular interest for this purpose. Endogenous retroviruses are a result of integration of retroviral genomes into the genome of infected germ cells as DNA proviruses, which are then carried in all cells of the offspring of the organism. Porcine endogenous retroviruses (PERVs) are of special concern because they are found in pig organs and tissues that might otherwise be used for xenotransplantation. PERV proviruses can be induced to replicate and recombine …
Local Adaptation, Genetic Divergence, And Experimental Selection In A Foundation Grass Across The Us Great Plains’ Climate Gradient, Matthew Galliart, Nora Bello, Mary Knapp, Jesse Poland, Paul St Amand, Sara Baer, Brian Maricle Ph.D., Adam B. Smith, Loretta Johnson
Local Adaptation, Genetic Divergence, And Experimental Selection In A Foundation Grass Across The Us Great Plains’ Climate Gradient, Matthew Galliart, Nora Bello, Mary Knapp, Jesse Poland, Paul St Amand, Sara Baer, Brian Maricle Ph.D., Adam B. Smith, Loretta Johnson
Biological Sciences Faculty Publications
Many prior studies have uncovered evidence for local adaptation using reciprocal transplant experiments. However, these studies are rarely conducted for a long enough time to observe succession and competitive dynamics in a community context, limiting inferences for long-lived species. Furthermore, the genetic basis of local adaptation and genetic associations with climate has rarely been identified. Here, we report on a long-term (6-year) experiment conducted under natural conditions focused on Andropogon gerardii, the dominant grass of the North American Great Plains tallgrass ecosystem. We focus on this foundation grass that comprises 80% of tallgrass prairie biomass and is widely used in …
The Cure For Cultivating Fastidious Microbes, Arundhati Bakshi, Austen T. Webber, Lorelei E. Patrick, William Wischusen, Cameron Thrash
The Cure For Cultivating Fastidious Microbes, Arundhati Bakshi, Austen T. Webber, Lorelei E. Patrick, William Wischusen, Cameron Thrash
Biological Sciences Faculty Publications
Course-Based Undergraduate Research Experiences (CUREs) expand the scientific educational benefits of research to large groups of students in a course setting. As part of an ongoing effort to integrate CUREs into first-year biology labs, we developed a microbiology CURE (mCURE) that uses a modified dilution-toextinction high throughput culturing protocol for isolating abundant yet fastidious aquatic bacterioplankton during one semester. Students learn common molecular biology techniques like nucleic acid extraction, PCR, and molecular characterization; read and evaluate scientific literature; and receive training in scientific communication through written and oral exercises that incorporate social media elements. In the first three semesters, the …
Genetic And Environmental Influences On Stomates Of Big Bluestem (Andropogon Gerardii), Nick A. Varvel, Christina J. Hilt, Loretta C. Johnson, Matthew Galliart, Sara G. Baer, Brian R. Maricle Ph.D.
Genetic And Environmental Influences On Stomates Of Big Bluestem (Andropogon Gerardii), Nick A. Varvel, Christina J. Hilt, Loretta C. Johnson, Matthew Galliart, Sara G. Baer, Brian R. Maricle Ph.D.
Biological Sciences Faculty Publications
Big bluestem (Andropogon gerardii) is a dominant C4 prairie grass that has wide distribution and several genetically distinct ecotypes. Many of the ecotypic adaptations are related to water availability in the native environment. Stomates facilitate photosynthetic gas exchange and regulate water loss from the plant. As such, stomatal size and density represent possible adaptations to conserve water. We hypothesized drought-tolerant ecotypes of big bluestem would have fewer or smaller stomates compared to more mesic ecotypes. Five ecotypes of big bluestem were planted in four common gardens from western Kansas to southern Illinois, USA to determine genetic and environmental influences on …
Anti-Apoptotic Effects Of Human Placental Hydrolysate Against Hepatocyte Toxicity In Vivo And In Vitro, Dong Ho Bak, Jungtae Na, Mi Ji Choi, Byung Chul Lee, Chang Taek Oh, Jeom Yong Kim, Hae Jung Han, Moo Joong Kim, Tae Ho Kim, Beom Joon Kim
Anti-Apoptotic Effects Of Human Placental Hydrolysate Against Hepatocyte Toxicity In Vivo And In Vitro, Dong Ho Bak, Jungtae Na, Mi Ji Choi, Byung Chul Lee, Chang Taek Oh, Jeom Yong Kim, Hae Jung Han, Moo Joong Kim, Tae Ho Kim, Beom Joon Kim
Biological Sciences Faculty Publications
Apoptosis and oxidative stress are essential for the pathogenesis of acute liver failure and fulminant hepatic failure. Human placental hydrolysate (hPH) has been reported to possess antioxidant and anti-inflammatory properties. In the present study, the protective effects of hPH against D-galactosamine (D-GalN)- and lipopolysaccharide (LPS)-induced hepatocyte apoptosis were investigated in vivo. In addition, the molecular mechanisms underlying the anti-apoptotic activities of hPH against D-GalN-induced cell death in vitro were examined. Male Sprague-D awley rats were injected with D-GaIN/LPS with or without the administration of hPH. Rats were sacrificed 24 h after D-GaIN/LPS intraperitoneal injection, and the blood and liver samples …
Human Umbilical Cord Blood Mesenchymal Stem Cells Engineered To Overexpress Growth Factors Accelerate Outcomes In Hair Growth, Dong Ho Bak, Mi Ji Choi, Soon Re Kim, Byung Chul Lee, Jae Min Kim, Eun Su Jeon, Wonil Oh, Ee Seok Lim, Byung Cheol Park, Moo Joong Kim, Jungtae Na, Beom Joon Kim
Human Umbilical Cord Blood Mesenchymal Stem Cells Engineered To Overexpress Growth Factors Accelerate Outcomes In Hair Growth, Dong Ho Bak, Mi Ji Choi, Soon Re Kim, Byung Chul Lee, Jae Min Kim, Eun Su Jeon, Wonil Oh, Ee Seok Lim, Byung Cheol Park, Moo Joong Kim, Jungtae Na, Beom Joon Kim
Biological Sciences Faculty Publications
Human umbilical cord blood mesenchymal stem cells (hUCB-MSCs) are used in tissue repair and regeneration; however, the mechanisms involved are not well understood. We investigated the hair growth-promoting effects of hUCB-MSCs treatment to determine whether hUCB-MSCs enhance the promotion of hair growth. Furthermore, we attempted to identify the factors responsible for hair growth. The effects of hUCB-MSCs on hair growth were investigated in vivo, and hUCB-MSCs advanced anagen onset and hair follicle neogeneration. We found that hUCB-MSCs co-culture increased the viability and up-regulated hair induction-related proteins of human dermal papilla cells (hDPCs) in vitro. A growth factor antibody array revealed …
Topical Administration Of Egf Suppresses Immune Response And Protects Skin Barrier In Dncb-Induced Atopic Dermatitis In Nc/Nga Mice, Young Je Kim, Mi Ji Choi, Dong Ho Bak, Byung Chul Lee, Eun Jung Ko, Ga Ram Ahn, Seung Won Ahn, Moo Joong Kim, Jungtae Na, Beom Joon Kim
Topical Administration Of Egf Suppresses Immune Response And Protects Skin Barrier In Dncb-Induced Atopic Dermatitis In Nc/Nga Mice, Young Je Kim, Mi Ji Choi, Dong Ho Bak, Byung Chul Lee, Eun Jung Ko, Ga Ram Ahn, Seung Won Ahn, Moo Joong Kim, Jungtae Na, Beom Joon Kim
Biological Sciences Faculty Publications
Atopic dermatitis (AD) is a common inflammatory skin disease characterized by a complex, heterogeneous pathogenesis including skin barrier dysfunction, immunology, and pruritus. Although epidermal growth factor (EGF) is essential for epithelial homeostasis and wound healing, the effect of EGF on AD remains to be explored. To develop a new therapy for AD, the anti-AD potential of EGF was investigated by inducing AD-like skin lesions in NC/Nga mice using 2,4-dinitrochlorobenzene (DNCB). EGF was administrated to NC/Nga mice to evaluate its therapeutic effect on DNCB-induced AD. EGF treatment improved dermatitis score, ear thickness, epidermal hyperplasia, serum total immunoglobulin E level, and transepidermal …
Sex-Based Differences In Anti-Predator Response Of Crickets To Chemical Cues Of A Mammalian Predator, Brian P. Tanis, Bradley Bott, Brian J. Gaston
Sex-Based Differences In Anti-Predator Response Of Crickets To Chemical Cues Of A Mammalian Predator, Brian P. Tanis, Bradley Bott, Brian J. Gaston
Biological Sciences Faculty Publications
Anti-predator behaviors like vigilance or hiding come at the expense of other fitness increasing behaviors such as foraging. To compensate for this trade-off, prey assess predation risk and modify the frequency of anti-predator behaviors according to the likelihood of the threat. In this study, we tested the ability of house crickets (Acheta domesticus) to indirectly assess predation risk via odors from a mammalian predator, Elliot's short-tailed shrew (Blarina hylophaga). As natural differences in encounter rates and predation risk differs between sexes, we tested if male and female crickets perceive similar rates of predation risk from the presence of shrew odor …
Bioinformatic Workflows For Generating Complete Plastid Genome Sequences—An Example From Cabomba (Cabombaceae) In The Context Of The Phylogenomic Analysis Of The Water-Lily Clade, Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch
Bioinformatic Workflows For Generating Complete Plastid Genome Sequences—An Example From Cabomba (Cabombaceae) In The Context Of The Phylogenomic Analysis Of The Water-Lily Clade, Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch
Biological Sciences Faculty Publications
The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships. Due to the widespread availability of next-generation sequencing, plastid genome sequences are being generated at breakneck pace. This trend towards massive sequencing of plastid genomes highlights the need for standardized bioinformatic workflows. In particular, documentation and dissemination of the details of genome assembly, annotation, alignment and phylogenetic tree inference are needed, as these processes are highly sensitive to the choice of software and the precise settings used. Here, we present the procedure and …
Statistical Hybrid Detection And The Inference Of Ancestral Distribution Areas In Tolpis (Asteraceae), Michael Gruenstaeudl, Bryan C. Carstens, Arnoldo Santos-Guerra, Robert K. Jansen
Statistical Hybrid Detection And The Inference Of Ancestral Distribution Areas In Tolpis (Asteraceae), Michael Gruenstaeudl, Bryan C. Carstens, Arnoldo Santos-Guerra, Robert K. Jansen
Biological Sciences Faculty Publications
Many historical biogeographic studies do not account for the effect of hybrid taxa on phylogenetic tree inference, despite recent advances in the statistical identification of such taxa. This investigation aims to illustrate the impact that hybrid taxa can have on ancestral area reconstructions of the plant genus Tolpis, which displays an evolutionary history possibly indicative of a back-colonization of the continental Mediterranean. We evaluate and apply two statistical hybrid detection methods, JML and STEM-hy, which assist in identifying reticulate patterns of allele coalescence. We also evaluate and apply a software tool, P2C2M, to test the fit of genetic loci to …