Biology Commons^™

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Exploration Of Student Biodiversity Knowledge And Decision-Making For A Wildlife Conservation Socioscientific Issue, Ashley R. Alred

School of Natural Resources: Dissertations, Theses, and Student Research

Global biodiversity, a foundation for ecosystem function, is diminishing at a rate unprecedented in the last 50 years. Biodiversity loss and ecosystem services deterioration is linked to increased food insecurity, reduced water quality and availability, decreased energy security, higher economic losses and human suffering (Millennium Ecosystem Assessment, 2005). Consequently, educators should invest in supporting students in their development of ecological understanding and formal decision-making skills so they are equipped with meaningful tools they can use as scientifically literate citizens. To contribute to that mission, this study seeks to explore student 1) comprehension and explanation of biodiversity concepts and 2) decision-making …

Kin Selection And Its Discontents, David C. Queller

Biology Faculty Publications & Presentations

Kin selection is a core aspect of social evolution theory, but a small number of critics have recently challenged it. Here I address these criticisms and show that kin selection remains an important explanation for much (though not all) social evolution. I show how many of the criticisms rest on historical idiosyncrasies of the way the field happened to develop, rather than on the real logic and evidence.

The Promise And Pitfalls Of Β-Diversity In Ecology And Conservation, Jonathan A. Myers, Joseph A. Lamanna

Biology Faculty Publications & Presentations

A key challenge in ecology and conservation is to determine how processes at different scales create variation in community composition (β-diversity). In this issue, Oldén & Halme show that grazers increase β-diversity through multiple processes at different scales. We discuss how β-diversity can elucidate fundamental processes of community assembly, challenges in linking processes to patterns, and unresolved questions across scales.

Problems Of Multi-Species Organisms: Endosymbionts To Holobionts, David C. Queller, Joan E. Strassmann

Biology Faculty Publications & Presentations

The organism is one of the fundamental concepts of biology and has been at the center of many discussions about biological individuality, yet what exactly it is can be confusing. The definition that we find generally useful is that an organism is a unit in which all the subunits have evolved to be highly cooperative, with very little conflict. We focus on how often organisms evolve from two or more formerly independent organisms. Two canonical transitions of this type—replicators clustered in cells and endosymbiotic organelles within host cells—demonstrate the reality of this kind of evolutionary transition and suggest conditions that …

Influence Of Tick And Mammalian Physiological Temperatures On Borrelia Burgdorferi Biofilms, Shafiq Shaikh, Venkata Arun Timmaraju, Jason Torres, Kayla Socarras, Priyanka A. Theophilus, Eva Sapi

Biology and Environmental Science Faculty Publications

The spirochaete bacterium Borrelia burgdorferi sensu lato is the aetiologic agent of Lyme disease. Borrelia is transmitted to mammals through tick bite and is adapted to survive at tick and mammalian physiological temperatures. We have previously shown that B. burgdorferi can exist in different morphological forms, including the antibiotic-resistant biofilm form, in vitro and in vivo. B. burgdorferi forms aggregates in ticks as well as in humans, indicating potential of biofilm formation at both 23 and 37 °C. However, the role of various environmental factors that influence Borrelia biofilm formation remains unknown. In this study, we investigated the effect …

Photography-Based Taxonomy Is Inadequate, Unnecessary, And Potentially Harmful For Biological Sciences, Luis M. P. Ceríaco, Eliécer E. Gutiérrez, Alain Dubois, Rafael O. De Sá, Et Al.

Biology Faculty Publications

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per …

Genome Of The Asian Longhorned Beetle (Anoplophora Glabripennis), A Globally Significant Invasive Species, Reveals Key Functional And Evolutionary Innovations At The Beetle-Plant Interface, Duane D. Mckenna, Erin D. Scully, Yannick Pauchet, Kelli Hoover, Roy Kirsch, Scott M. Geib, Robert F. Mitchell, Robert M. Waterhouse, Seung-Joon Ahn, Deanna Arsala, Joshua B. Benoit, Heath Blackmon, Tiffany Bledsoe, Julia H. Bowsher, André Busch, Bernarda Calla, Hsu Chao, Anna K. Childers, Christopher Childers, Dave J. Clarke, Lorna Cohen, Jeffery P. Demuth, Huyen Dinh, Harshavardhan Doddapaneni, Amanda Dolan, Jian J. Duan, Shannon Dugan, Markus Friedrich, Karl M. Glastad, Michael A. D. Goodisman, Stephanie Haddad, Yi Han, Daniel S. T. Hughes, Panagiotis Ioannidis, J. Spencer Johnston, Jeffery W. Jones, Leslie A. Kuhn, David R. Lance, Chien-Yueh Lee, Sandra L. Lee, Han Lin, Jeremy A. Lynch, Armin P. Moczek, Shwetha C. Murali, Donna M. Muzny, David R. Nelson, Subba R. Palli, Kristen A. Panfilio, Dan Pers, Monica F. Poelchau, Honghu Quan, Jiaxin Qu, Ann M. Ray, Joseph P. Rinehart, Hugh M. Robertson, Richard Roehrdanz, Andrew J. Rosendale, Seunggwan Shin, Christian Silva, Alex S. Torson, Iris M. Vargas Jentzsch, John H. Werren, Kim C. Worley, George Yocum, Evgeny M. Zdobnov, Richard A. Gibbs, Stephen Richards

Entomology Faculty Publications

Background: Relatively little is known about the genomic basis and evolution of wood-feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle.

Results: …

Screening Of Plants For Antibacterial Properties: Growth Inhibition Of Staphylococcus Aureus By Artemisia Tridentata, Steven Ross Eichelbaum

FIU Electronic Theses and Dissertations

Drug-resistant pathogenic and opportunistic bacteria are increasing in occurrence and prevalence, and pose a dangerous threat to human health. In the search for novel antibiotics with which to combat this threat, plants, specifically those used in traditional medicine with ascribed antibacterial properties, offer a promising and potentially vast source of such therapeutic compounds. The purpose of this study was therefore to screen chemical extracts created from various plant species for antibacterial properties versus pathogenic bacterial species. In the course of these antibacterial assays, we successfully identified a methanol extract derived from Artemisia tridentata tridentata plant material as capable of inhibiting …

Policy On The Application Of Fish Size Limits In Western Australia, Department Of Fisheries

Fisheries management papers

No abstract provided.

Reproductive Success Through High Pollinator Visitation Rates Despite Self Incompatibility In An Endangered Wallflower, Miranda K. Melen, Julie A. Herman, Jessica Lucas, Rachel E. O’Malley, Ingrid M. Parker, Aaron M. Thom, Justen B. Whittall

Biology

PREMISE OF THE STUDY: Self incompatibility (SI) in rare plants presents a unique challenge—SI protects plants from inbreeding depression, but requires a sufficient number of mates and xenogamous pollination. Does SI persist in an endangered polyploid? Is pollinator visitation sufficient to ensure reproductive success? Is there evidence of inbreeding/outbreeding depression? We characterized the mating system, primary pollinators, pollen limitation, and inbreeding/outbreeding depression in Erysimum teretifolium to guide conservation efforts.

METHODS: We compared seed production following self pollination and within- and between-population crosses. Pollen tubes were visualized after self pollinations and between-population pollinations. Pollen limitation was tested in the field. Pollinator …

Effect Of Rpon, Rpos And Luxs Pathways On The Biofilm Formation And Antibiotic Sensitivity Of Borrelia Burgdorferi, Eva Sapi, Priyanka A. Theophilus, Truc V. Pham, Divya Burugu, David Luecke

Biology and Environmental Science Faculty Publications

Borrelia burgdorferi, the causative agent of Lyme disease, is capable of forming biofilm in vivo and in vitro, a structure well known for its resistance to antimicrobial agents. For the formation of biofilm, signaling processes are required to communicate with the surrounding environment such as it was shown for the RpoN—RpoS alternative sigma factor and for the LuxS quorum-sensing pathways. Therefore, in this study, the wild-type B. burgdorferi and different mutant strains lacking RpoN, RpoS, and LuxS genes were studied for their growth characteristic and development of biofilm structures and markers as well as for their antibiotic sensitivity. …

Inter- And Intra-Individual Variation In Predator-Related Behavioral Plasticity Expressed By Female Green Swordtails (Xiphophorus Hellerii), Rachael A. Disciullo

School of Biological Sciences: Dissertations, Theses, and Student Research

Phenotypic plasticity is the ability of one genotype to express multiple phenotypes under variable environments. Behavioral plasticity is a type of phenotypic plasticity in which individuals adjust behavior in response to changes in environment. Often, behavioral plasticity is studied at the level of the population, rather than at the level of the individual. Further, few studies have considered the effect of individual traits, such as size and age, on the expression of behavioral plasticity, or, how individual plasticity may be correlated across different contexts. In this study, we used female green swordtails (Xiphophorus hellerii) to test the effects …

The Evolution Of Line-1 In Vertebrates, Stephane Boissinot, Akash Sookdeo

Publications and Research

The abundance and diversity of the LINE-1 (L1) retrotransposon differ greatly among vertebrates. Mammalian genomes contain hundreds of thousands L1s that have accumulated since the origin of mammals. A single group of very similar elements is active at a time in mammals, thus a single lineage of active families has evolved in this group. In contrast, non-mammalian genomes (fish, amphibians, reptiles) harbor a large diversity of concurrently transposing families, which are all represented by very small number of recently inserted copies. Why the pattern of diversity and abundance of L1 is so different among vertebrates remains unknown. To address this …

Canine Filamentous Dermatitis Associated With Borrelia Infection, Marianne J. Middelveen, Gheorghe M. Rotaru, Jody L. Mcmurray, Katherine R. Filush, Eva Sapi, Jennie Burke, Agustin Franco, Lorenzo Malquori, Melissa C. Mcelroy, Raphael B. Stricker

Biology and Environmental Science Faculty Publications

Background: Although canine clinical manifestations of Lyme disease vary widely, cutaneous manifestations are not well documented in dogs. In contrast, a variety of cutaneous manifestations are reported in human Lyme disease caused by the spirochete Borrelia burgdorferi. A recently recognized dermopathy associated with tickborne illness known as Morgellons disease is characterized by brightly-colored filamentous inclusions and projections detected in ulcerative lesions and under unbroken skin. Recent studies have demonstrated that the dermal filaments are collagen and keratin biofibers produced by epithelial cells in response to spirochetal infection. We now describe a similar filamentous dermatitis in canine Lyme disease. Methods and …

Soil Moisture On Soledad Ridge In Santa Rosa Island, Channel Islands National Park, Carrie Fong, Kathryn Mceachern, Ken Niessen

STAR Program Research Presentations

Santa Rosa Island is one of the Channel Islands off the coast of southern California. Before the island was heavily grazed, Santa Rosa Island is thought to have had large stands of island oak trees, Quercus tomentella, that provided a critical source of water for the ecosystem by creating a “cloud forest”. Wind-borne fog collects on the leaves, branches, and twigs of the island oaks and other native shrubs. Once the water condenses it drips, falls, and soaks into the soil. Introducing cattle and especially sheep to the island has damaged the ecosystem and nearly decimated Santa Rosa Island …

Studying The Effects Of Serpentine Soil On Adapted And Non-Adapted Species Using Arduino Technology, Kiana Saniee, Edward Himelblau, Brian Paavo

STAR Program Research Presentations

Abstract: Serpentine soils are formed from ultramafic rocks and are represent an extreme environment for plants. Serpentine soils are unique in that they carry high concentrations of heavy metals, are nutrient deficient, particularly in calcium, and have poor water retention capabilities. Although these soils constitute harsh conditions for plant growth, there are a number of species that are adapted and even endemic to serpentine soil. Water retention by commercial potting mix was compared with serpentine soil. Also, serpentine adapted and non-adapted species were grown in both soil treatments and physiological data were collected. We used the Arduino electronic platform to …

Foraging Behavior Of Tetramorium Caespitum In An Urban Environment: The Effect Of Food Quality On Foraging, Nicole A. Crofton, Sabrina R. D'Mello, Nene S. Sy

Student Publications

Animals' foraging strategies are directly related to their fitness. Proposed models of optimal foraging assume that animals strategize in terms of maximizing benefits over the cost of acquiring resources. Ants are social insects that are comparable in biomass to humans inhabiting the plant. As such, it is crucial to understand the foraging strategies of such an influential member of the ecosystem. With the ever-increasing rate of urbanization and human encroachment, it is even more important to consider the foraging patterns of species inhabiting urban areas. In this study we investigate optimal foraging strategies in the pavement ant, Tetramorium caespitum. Specifically, …

Evolutionary Interpretations Of Mycobacteriophage Biodiversity And Host-Range Through The Analysis Of Codon Usage Bias, Laura A. Esposito, Swati Gupta, Fraida Streiter, Ashley Prasad, John J. Dennehy

Publications and Research

In an genomics course sponsored by the Howard Hughes Medical Institute (HHMI), undergraduate students have isolated and sequenced the genomes of more than 1,150 mycobacteriophages, creating the largest database of sequenced bacteriophages able to infect a single host, Mycobacterium smegmatis, a soil bacterium. Genomic analysis indicates that these mycobacteriophages can be grouped into 26 clusters based on genetic similarity. These clusters span a continuum of genetic diversity, with extensive genomic mosaicism among phages in different clusters. However, little is known regarding the primary hosts of these mycobacteriophages in their natural habitats, nor of their broader host ranges. As such, it …

A Francisella-Like Endosymbiont In The Gulf Coast Tick Evolved From A Mammalian Pathogen, Jonathan G. Gerhart, Abraham S. Moses, Rahul Raghavan

Biology Faculty Publications and Presentations

Ticks (order Ixodida) vector pathogenic bacteria that cause diseases in humans and other mammals. They also contain bacteria that are closely related to pathogens but function as endosymbionts that provide nutrients that are missing from mammalian blood—their sole food source. For instance, mammalian pathogens such as Coxiella burnetii and Francisella tularensis, as well as Coxiella-like and Francisella-like endosymbionts (CLEs and FLEs, respectively) occur in ticks worldwide. However, it is not clear whether the pathogens evolved from symbionts or symbionts from pathogens. Recent studies have indicated that C. burnetii likely originated from a tick-associated ancestor, but the origins …

A Novel Qtl Associated With Dwarf Bunt Resistance In Idaho 444 Winter Wheat, Jianli Chen, Mary J. Guttieri, Junli Zhang, David Hole, Edward Souza, Blair Goates

Green Canyon Environmental Research Area, Logan Utah

Dwarf bunt [Tilletia controversa J.G. Kühn [as ‘contraversa’], in Rabenhorst, Hedwigia 13: 188 (1874)] is a destructive disease of wheat (Triticum aestivum L.) that reduces grain yield and quality. A number of distinct genes conferring resistance to dwarf bunt have been used by breeding programs for nearly 100 years. However, few markers were identified that can be used in selection of dwarf bunt resistance. A recombinant inbred line (RIL) population derived from the bunt-resistant germplasm, Idaho 444 (IDO444), and the susceptible cultivar, Rio Blanco, was evaluated for phenotypic reaction to dwarf bunt inoculation in four trials in …

A Species-Level Phylogeny Of Extant Snakes With Description Of A New Colubrid Subfamily And Genus, Alex Figueroa, Alexander D. Mckelvy, L. Lee Grismer, Charles D. Bell, Simon P. Lailvaux

Publications and Research

Background With over 3,500 species encompassing a diverse range of morphologies and ecologies, snakes make up 36% of squamate diversity. Despite several attempts at estimating higherlevel snake relationships and numerous assessments of generic- or species-level phylogenies, a large-scale species-level phylogeny solely focusing on snakes has not been completed. Here, we provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61).

Results Increased taxon sampling resulted …

The Effects Of Drought On Diets Of Apex Predators In The South African Lowveld Inferred By Fecal Hair Analysis, Shelby Wade

Mahurin Honors College Capstone Experience/Thesis Projects

To properly manage offtake quotas and conservation efforts, Balule Nature Reserve (South Africa) instituted a study in 2014 to determine prey species selection by megapredators. In 2015, Balule Nature Reserve received about 190 mm less rainfall between the months of January and June than in 2014 (116 mm less than average). This study compares the diets of lions and hyaenas between 2014 and 2015. Prey species consumed were determined by fecal analysis, and results were compared to prey availability. Sixteen, 1 km2 plots were chosen from the 400 km2 Reserve. Between June and August 2015, we walked three, 1 km …

Investigating Sub-Tropical Community Resistance And Resilience To Climate Disturbance, Ross E. Boucek

FIU Electronic Theses and Dissertations

Changes in global climate will likely increase climate variability. In turn, changes in climate variability have begun to alter the frequency, intensity, and timing of climate disturbances. Continued changes in the climate disturbance regime experienced by natural systems will undoubtedly affect ecological processes at every hierarchical scale. Thus, in order to predict the dynamics of ecological systems in the future, we must develop a more mechanistic understanding of how and in what ways climate disturbance affects natural systems. In South Florida, two climate disturbances recently affected the region, a severe cold spell in 2010, and a drought in 2011. Importantly, …

Changes In Job Satisfaction Through Time In Two Major New England Fishing Ports, Tarsila Seara, Richard Pollnac, John J. Poggie

Biology and Environmental Science Faculty Publications

Fishing communities in the U.S. have been the subject of great transformation due to changes in availability of resources and the implementation of different rules and regulations to manage the fisheries and conserve fish stocks. Job satisfaction has been widely regarded as an important component of well-being especially among fishermen because the occupation of fishing includes attributes of ‘adventure,’ ‘challenge,’ and ‘being outdoors’ infrequently found in other employment. It has been previously demonstrated that management driven changes to fishing communities can directly and indirectly affect aspects of fishermen’s job satisfaction and, consequently, their wellbeing. This paper presents a unique through …

Theory Of Inclusive Fitness, David C. Queller

Biology Faculty Publications & Presentations

A review of Social Evolution and Inclusive Fitness Theory: An Introduction. By James A. R. Marshall. Princeton (New Jersey): Princeton University Press. $39.95. xix + 195 p.; ill.; index. ISBN: 978-0-691-16156-3. 2015.

Field Estimates Of Parentage Reveal Sexually Antagonistic Selection On Body Size In A Population Of Anolis Lizards, Mary C. Duryea, Patrick Bergeron, Zachary Clare-Salzler, Ryan Calsbeek

Dartmouth Scholarship

Sexual dimorphism evolves when selection favors different phenotypic optima between the sexes. Such sexually antagonistic selection creates intralocus sexual conflict when traits are genetically correlated between the sexes and have sex‐specific optima. Brown anoles are highly sexually dimorphic: Males are on average 30% longer than females and 150% heavier in our study population. Viability selection on body size is known to be sexually antagonistic, and directional selection favors large male size whereas stabilizing selection constrains females to remain small. We build on previous studies of viability selection by measuring sexually antagonistic selection using reproductive components of fitness over three generations …

Polyandry In The Absence Of Fitness Benefits In A Species With Female-Biased Sexual Size Dimorphism, Marie Claire Chelini, Eileen A. Hebets

Eileen Hebets Publications

Most studies exploring the evolution of female mating systems focus on species in which females are either monandric (mate with a single male) or highly polyandric (mate with multiple males), but less is understood about variation in mating decisions within a species. How and why do females of a single species decide whether or not to copulate with additional mates? In this study we attempt to answer this question in the highly dimorphic crab spider, Mecaphesa celer, whose females may be either monandric or polyandric. We tested three hypotheses: (1) a female’s decision to remate is based on sequential mate …

A Review On The Invasion Ecology Of Amur Honeysuckle (Lonicera Maackii, Caprifoliaceae), A Case Study Of Ecological Impacts At Multiple Scales, Rachel E. Mcneish, Ryan W. Mcewan

Biology Faculty Publications

Invasive species are of global importance because of their impacts on ecological communities, habitat structure, native community dynamics, and ecosystem processes and function. Scientists and conservation managers are increasingly focusing on the biological impacts of invasive species and on devising management practices that emphasize the health of ecosystems based on measured biological processes. Amur honeysuckle (Lonicera maackii (Rupr.) Herder) is a highly successful invasive shrub in forests of eastern North America. The scientific literature surrounding this species has grown in the past several decades as researchers have investigated L. maackii impacts across multiple ecological scales. In this review we …

Functional Diversity Of Small And Large Trees Along Secondary Succession In A Tropical Dry Forest, Lucía Sanaphre-Villanueva, Juan Manuel Dupuy, José Luis Andrade, Casandra Reyes-García, Horacio Paz, Paula C. Jackson

Faculty and Research Publications

Functional Diversity is considered an important driver of community assembly in environmental and successional gradients. To understand tree assembly processes in a semideciduous tropical forest, we analyzed the variation of Functional Richness (FRic), Functional Divergence (FDiv), and Functional Evenness (FEve) of small vs. large trees in relation to fallow age after slash-and-burn agriculture and topographical position (flat sites vs. hills). FRic of small trees was lower than null model predicted values across the successional gradient, and decreased unexpectedly in older successional ages. FRic of large trees was higher than null model predictions early in succession and lower in late-successional stands …