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Adaptive Radiation Along A Benthic/Pelagic Ecological Axis In North America’S Most Diverse, Endemic Clade Of Freshwater Fishes, Phillip Ray Hollingsworth Jr.

Doctoral Dissertations

Eastern North America is unparalleled throughout the temperate world in terms of freshwater fish biodiversity. A monophyletic group of approximately 250 cyprinid fishes, known as the open posterior myodome (OPM) clade, dominates the fish species richness in the freshwater ecosystems of this region. In this dissertation, I explore the influence of eco-evolutionary divergence along a benthic/pelagic habitat axis on the generation of this hyper-diverse group of fishes. My three chapters work synergistically to address the question: Did a historical shift from benthic to pelagic habitats by OPM cyprinids represent the invasion of an open adaptive zone and result in the …

Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr

Electronic Theses and Dissertations

The future of Lake Baikal’s biodiversity is uncertain in response to climate change. Unlike its diverse benthos, Lake Baikal’s zooplankton is species poor, with up to 96% of its biomass being composed of a single Calanoid copepod species, Epischura baikalensis. This study characterizes the genetic differentiation and differential gene expression of E. baikalensis. Using partial-transcriptome sequences obtained by 454 Rosche and Illumina sequencing technologies, the genetic differentiation at inferred single nucleotide polymorphism (SNP) sites and differential gene expression in populations sampled from various parts of the lake were analyzed. The functional genomics of genes showed significant differential …

Fossil Crocodilians From The High Guajira Peninsula Of Colombia, And The History Of Neogene Crocodilian Diversity In Tropical South America, Jorge W. Moreno-Bernal

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

The greatest diversity of Cenozoic crocodilians occurred during the Miocene in equatorial South America. However, the origin of this high diversity and its relationship to environmental factors are poorly understood. Most described species come from localities assigned to Laventan (13.8-11.8 Ma) and Huayquerian (9.0-6.8 Ma) South American land mammal ages (SALMAS), whereas the record is sparse in the early to middle Miocene and after the latest Miocene and Pliocene. Field research in the Castilletes (early Miocene-Pliocene) Formation in the High Guajira Peninsula of Colombia provides new fossil data on the origin of Neotropical crocodylian diversity. The Castilletes Formation crops out …

Genetic Structure Of Little Brown Bats (Myotis Lucifugus) Corresponds With Spread Of White-Nose Syndrome Among Hibernacula, Cassandra M. Miller-Butterworth, Maarten J. Vonhof, Joel Rosenstern, Greg G. Turner, Amy L. Russell

Amy L. Russell

Multilocus Coalescent Analyses Reveal The Demographic History And Speciation Patterns Of Mouse Lemur Sister Species, Christopher Blair, Kellie L. Heckman, Amy L. Russell, Anne D. Yoder

Amy L. Russell

The First Molecular Phylogeny Of Buthidae (Scorpiones), Victor Fet, Benjamin Gantenbein, Alexander Gromov, Graeme Lowe, Wilson Lourenço

Victor Fet

The first partial phylogeny of family Buthidae (17 genera) is presented, based on molecular data (16S rRNA mitochondrial DNA). The strong support for a monophyletic Old World group of 13 genera (mainly Palearctic desert forms) is demonstrated, while representative genera from Madagascar (Grosphus) and Southeast Asia (Lychas) group outside, as well as New World genera Centruroides and Rhopalurus. A very strong support is observed for the first time for three groups of Old World genera: (a) Compsobuthus, Mesobuthus, Liobuthus, Kraepelinia; (b) Hottentotta, Buthacus; (c) Orthochirus, Anomalobuthus. Phylogenetic hypotheses are discussed.

Etudes On Iurids, V. Further Revision Of Iurus Thorell, 1876 (Scorpiones: Iuridae), With A Description Of A New Genus And Two New Species, Michael Soleglad, Victor Fet, František Kovařík, Ersen Yağmur

Victor Fet

Iurus populations from the Aegean area are studied, including the Greek islands of Crete, Karpathos, Kythira, Rhodes, and Samos. A new genus, Protoiurus gen. nov., and two new species, Protoiurus rhodiensis sp. nov. and P. stathiae sp. nov., are described. The two genera, Iurus and Protoiurus, are diagnosed by their hemispermatophore structure; a cladistic analysis based on this structure is presented. Genus Iurus Thorell, 1876 includes three species: I. dekanum, I. dufoureius, and I. kinzelbachi; genus Protoiurus includes five species: P. asiaticus comb. nov., P. kadleci comb. nov., P. kraepelini comb. nov., P. rhodiensis sp. nov., and P. stathiae sp. …

Evolution Of Scorpion Orthobothriotaxy: A Cladistic Approach, Michael E. Soleglad, Victor Fet

Victor Fet

This study presents a cladistic analysis of the derivation of orthobothriotaxic patterns in scorpions. Included in this analysis are the original three orthobothriotaxic patterns defined by Vachon (1972, 1974), the pattern of the unique scorpion Pseudochactas ovchinnikovi Gromov, 1998, and two trichobothrial patterns of fossil scorpions, the Upper Carboniferous palaeopisthacanthids and the Lower Cretaceous archaeobuthids. An overview of all fossil scorpion material where trichobothria are reported is presented in detail. The approach used in this analysis is to model the existence of an individual trichobothrium, adopting the ‘absence of’, ‘petite size’ and ‘full size’ as incremental stages of a trichobothrium’s …

Morphology Analysis Supports Presence Of More Than One Species In The “Euscorpius Carpathicus” Complex (Scorpiones: Euscorpiidae), Victor Fet, Michael E. Soleglad

Victor Fet

We investigate a number of scorpion populations from southern and central Europe, commonly classified under a “catch-all” name of Euscorpius carpathicus (L., 1767). This species includes a high number of described subspecies but its composition is not resolved. The detailed morphology analysis in the present paper includes a number of new characters, in particular individually mapped external patellar accessory trichobothria. It suggests that several clearly separated lineages are present. E. carpathicus (L.) is restricted here to geographically marginal populations from Romania (terra typica), which exhibit loss of one trichobothrium in the patellar series em (= 3). Another lineage (Austria, Croatia, …

Etudes On Iurids, Ii. Revision Of Genus Calchas Birula, 1899, With The Description Of Two New Species (Scorpiones: Iuridae), Victor Fet, Michael E. Soleglad, František Kovařík

Victor Fet

The relict, phylogenetically important scorpion genus Calchas Birula, 1899 (Iuridae) remained monotypic since its description. Its sole species, Calchas nordmanni Birula, 1899, was known only from northeastern Turkey until Kinzelbach (1980) published first records from southern and southeastern Turkey. A few more localities have been reported from Turkey; the species was also found on two Greek islands, Samos and Megisti. We analyzed significant material (63 specimens, including a previously unpublished large series from Naturhistorisches Museum Wien), and concluded that three distinct, disjunct species exist rather than one widespread species as previously thought. Two new species are described: Calchas birulai sp. …

A New Hottentotta Birula, 1908 From Afghanistan, With A Note On The Generic Position Of Mesobuthus Songi Lourenço, Qi Et Zhu, 2005 (Scorpiones: Buthidae), Rolando Teruel, Jan Ove Rein

Victor Fet

A new species of Hottentotta Birula, 1908 is described from the Kabul area in Afghanistan; this addition represents the fifth species of this genus confirmed for this Middle East country. It is a member of the “Indian group” of the genus (the first one recorded from Afghanistan), and is most closely related to Hottentotta jabalpurensis Kovařík, 2007, Hottentotta stockwelli Kovařík, 2007, Hottentotta tamulus (Fabricius, 1798) and Hottentotta songi (Lourenço, Qi et Zhu, 2005) n. comb., which is herein demonstrated to be a member of Hottentotta and is thus formally transferred to this genus.

Etudes On Iurids, Vi. Further Revision Of Calchas Birula, 1899 (Scorpiones: Iuridae), With A Description Of A New Genus And Two New Species., Ersen Aydın Yağmur, Michael E. Soleglad, Victor Fet, František Kovařík

Victor Fet

Several new Calchas populations are studied from Turkey, including specimens from Hakkari Province, which borders the northern edge of Iraq. A new genus, Neocalchas, gen. nov., and two new species, Calchas anlasi, sp. nov. and C. kosswigi, sp. nov., are described. The two genera, Calchas and Neocalchas, are diagnosed by their hemispermatophore structure, chelal finger dentition, telson morphometrics and setation, and trichobothrial topology of the pedipalp chela. Genus Calchas Birula, 1899 includes four species: C. anlasi, sp. nov., C. birulai, C. kosswigi, sp. nov., and C. nordmanni; genus Neocalchas, gen. nov., includes one species, N. gruberi, comb. nov. New diagnoses …

The Cretaceous Scorpion Genus, Archaeobuthus, Revisited (Scorpiones: Archaeobuthidae), Chris Baptista, Jorge Santiago-Blay, Victor Fet, Michael Soleglad

Victor Fet

No abstract provided.

Contributions To Scorpion Systematics. I. On Recent Changes In High-Level Taxonomy, Victor Fet, Michael E. Soleglad

Victor Fet

Prendini & Wheeler (2005) criticized the methods of phylogenetic analyses by Soleglad, Fet, and their coauthors, and executed an unprecedented taxonomic action: without analyzing any of these taxa, they performed a wholesale synonymization of four parvorders, eight superfamilies, one family, 11 subfamilies, eight tribes, two subtribes, and three genera (in total, 37 taxa) of scorpions, and made other taxonomic changes. No alternative new classification has been proposed (instead, they revert to a previous classification), and no results of original work on this subject by Prendini & Wheeler (2005) have been presented. Here, we reverse all taxonomic changes performed by Prendini …

Recognition Of Two New Species Of Freshwater Crabs From The Seychelles Based On Molecular Evidence (Potamoidea: Potamonautidae)., Neil Cumberlidge, Savel Regan Daniels Phd

Journal Articles

The Afrotropical freshwater crab genus Seychellum is endemic to the granitic Seychelles in the Indian Ocean (Mahé, Silhouette, Praslin, La Digue and Frégate). Here we describe two new cryptic species of Seychellum that represent two evolutionarily separate lineages of a previously monotypic genus. This raises to three the number of species of freshwater crabs known from Seychelles. Each species is endemic to either one island (Silhouette) or to a pair of islands (Mahé and Frégate, or Praslin and La Digue). The three species can be clearly distinguished as separate lineages by DNA analysis, haplotyping and examination of gonopod characters. The …

Resolution Of Deep Nodes Yields An Improved Backbone Phylogeny And A New Basal Lineage To Study Early Evolution Of Asteraceae, Jose L. Panero, Susana E. Freire, Luis Ariza Espinar, Bonnie S. Crozier, Gloria E. Barboza, Juan J. Cantero

Jose L. Panero

A backbone phylogeny that fully resolves all subfamily and deeper nodes of Asteraceae was constructed using 14 chloroplast DNA loci. The recently named genus Famatinanthus was found to be sister to the Mutisioideae–Asteroideae clade that represents more than 99% of Asteraceae and was found to have the two chloroplast inversions present in all Asteraceae except the nine genera of Barnadesioideae. A monotypic subfamily Famatinanthoideae and tribe Famatinantheae are named herein as new. Relation- ships among the basal lineages of the family were resolved with strong support in the Bayesian analysis as (Barnadesioideae (Famatinanthoideae (Mutisioideae (Stifftioideae (Wunderlichioideae– Asteroideae))))). Ancestral state reconstruction …

Sex-Biased Dispersal Produces High Error Rates In Mitochondrial Distance-Based And Tree-Based Species Delimitation, Liliana M. Dávalos, Amy L. Russell

Amy L. Russell

Accuracy And Efficiency Of Algorithms For The Demarcation Of Bacterial Ecotypes From Dna Sequence Data, Juan Carlos Francisco, Frederick M. Cohan, Danny Krizanc

Frederick M. Cohan

Identification of closely related, ecologically distinct populations of bacteria would benefit microbiologists working in many fields including systematics, epidemiology and biotechnology. Several laboratories have recently developed algorithms aimed at demarcating such ‘ecotypes’. We examine the ability of four of these algorithms to correctly identify ecotypes from sequence data. We tested the algorithms on synthetic sequences, with known history and habitat associations, generated under the stable ecotype model and on data from Bacillus strains isolated from Death Valley where previous work has confirmed the existence of multiple ecotypes. We found that one of the algorithms (ecotype simulation) performs significantly better than …