Biodiversity Commons^™

Deeply Rooted: The Story Of Congaree National Park, Taylor Karlin

Senior Theses

This photo-essay book was written to fulfill requirements for completion of a senior thesis project to graduate with honors from the South Carolina Honors College. Its purpose is to promote the enjoyment and preservation of the Congaree National Park by educating the public on the historical and ecological significance of the land and the many activities it has to offer. Despite its proximity to downtown Columbia, there remains a lack of public awareness about the park and the amazing activities and opportunities it has to offer. I have compiled information and pictures that will best depict the unique qualities of …

Impacts Of River Influence And Wave Exposure On The Epipsammic Diatoms Of The Lake Superior Wave Zone, Leon R. Katona

All NMU Master's Theses

Although little is known about primary productivity in wave zone habitats of very large lakes, it is presumably dominated by microalgae that attach to mineral substrates. Watershed energetics are linked with these wave zones through river mouth habitats, which provide nutrient and organismal input to lake systems. In this study, I assessed the abundance, productivity, and community composition of epipsammic diatoms in river mouth and beach habitats along the south-central coast of Lake Superior. Chlorophyll a concentrations were more than three-fold greater in river mouths (mean ± 1SE = 1.17 ± 0.45 mg/m²), than in wave zone (0.36 …

A New Adaptive Landscape: Urbanization As A Strong Evolutionary Force, Lauren Christie Breza

Masters Theses

Urbanization is rapidly increasing as human population growth steadily grows, but there is little consensus of the ecological consequence of this population shift and almost no information of the evolutionary consequences for local biodiversity. Nearly two-thirds of the world’s population will live in city centers by 2050 with profound impacts on landscapes that can act as important agents of selection. This study aims to identify 1) the net effect of urbanization on species richness, 2) how phylogenetic diversity varies between urban and rural sites, and 3) the strength of urbanization as a selection pressure. First, a meta-analysis was conducted in …

Rare Occurrences Of Free-Living Bacteria Belonging To Sedimenticola From Subtidal Seagrass Beds Associated With The Lucinid Clam, Stewartia Floridana, Aaron M. Goemann

Masters Theses

Lucinid clams and their sulfur-oxidizing endosymbionts comprise two compartments of a three-stage, biogeochemical relationship among the clams, seagrasses, and microbial communities in marine sediments. A population of the lucinid clam, Stewartia floridana, was sampled from a subtidal seagrass bed at Bokeelia Island Seaport in Florida to test the hypotheses: (1) S. floridana, like other lucinids, are more abundant in seagrass beds than bare sediments; (2) S. floridana gill microbiomes are dominated by one bacterial operational taxonomic unit (OTU) at a sequence similarity threshold level of 97% (a common cutoff for species level taxonomy) from 16S rRNA genes; …

Environmental Controls On The Diversity And Distribution Of Endosymbionts Associated With Phacoides Pectinatus (Bivalvia: Lucinidae) From Shallow Mangrove And Seagrass Sediments, St. Lucie County, Florida, Thomas Walters Doty

Masters Theses

Lucinid bivalves are capable of colonizing traditionally inhospitable shallow marine sediments due to metabolic functions of bacterial endosymbionts located within their gills. Because lucinids can often be the dominant sediment infauna, defining their roles in sediment and pore fluid geochemical cycling is necessary to address concerns related to changes in coastal biological diversity and to understanding the sensitivity of threatened coastal ecosystems over time. However, there has been limited research done to understand the diversity and distribution of many lucinid chemosymbiotic systems. Therefore, the goals of this thesis were to evaluate the distribution of Phacoides pectinatus and its endosymbiont communities …

Macrobenthic Communities In The Northern Gulf Of Mexico Hypoxic Zone: Testing The Pearson-Rosenberg Model, Shivakumar Shivarudrappa

Dissertations

The Pearson and Rosenberg (P-R) conceptual model of macrobenthic succession was used to assess the impact of hypoxia (dissolved oxygen [DO] ≤ 2 mg/L) on the macrobenthic community on the continental shelf of northern Gulf of Mexico for the first time. The model uses a stress-response relationship between environmental parameters and the macrobenthic community to determine the ecological condition of the benthic habitat. The ecological significance of dissolved oxygen in a benthic habitat is well understood. In addition, the annual recurrence of bottom-water hypoxia on the Louisiana/Texas shelf during summer months is well documented.

The P-R model illustrates the decreasing …

Urban Agriculture And Ecosystem Services: A Typology And Toolkit For Planners, Kathleen Doherty

Masters Theses

This thesis makes the connection between urban agriculture and a specific suite of ecosystem services and lays out a typology and toolkit for planners to take advantage of these ecosystem services. The services investigated here are: food production, water management, soil health, biodiversity, climate mitigation, and community development benefits. Research from a variety of fields was aggregated and synthesized to prove that urban agriculture can be beneficial for human as well as environmental health.

A set of urban agriculture typologies was generated to illustrate best practices to maximize a particular set of ecosystem services. The typologies are: production farm, stormwater …

The Effectiveness And Applicability Of Amphibians As Indicator Species For Long-Term Monitoring Of Ecological Changes In New England Forests, Ahmed Siddig

Doctoral Dissertations

The objective of this study is to assess the potential of two amphibians species, Eastern Red-backed Salamander (Plethodon cinereus (Green)) and Eastern Red-spotted Newt (Notopthalmus viridescens viridescens Rafinesque), as indicator species of forest disturbances at Harvard Forest, located in Petersham, Massachusetts, United States. Specifically, I 1) assess the impacts of these focal species to decline of hemlock forests in Harvard Forest; 2) calibrate abundance indices of P. cinereus based on artificial and natural objects surveys with a population size estimator based on depletion sampling; and 3) assess the potential of these salamanders as indicator species by developing an …

Protecting Ecosystems, Culture, And Human Rights In Chile Through Indigenous And Community-Conserved Territories And Areas, William G. Crowley

Capstone Collection

In environmental conservation circles around the world, the contributions of indigenous peoples and local communities to the sustainable maintenance of ecosystems and natural resources are being given increased attention. Whether for cultural, spiritual, economic, or other purposes, the use of traditional and local knowledge of habitat and resource management is slowly making its way into the modern environmental movement, and is being incorporated into the dominant conservation paradigms. These managed areas, known as Indigenous and Community-Conserved Territories and Areas, or ICCAs, are defined by the International Union for Conservation of Nature as “natural and/or modified ecosystems containing significant biodiversity …

The Enhancement Of Wild Bees (Hymenoptera: Apoidea) For Pollination Security, Eric M. Venturini

Electronic Theses and Dissertations

The acreage of pollinator-dependent crops continues to expand across the globe. Simultaneously, honey bee hives – an annually rented commodity that growers rely on – are more expensive every year and in some cases, scarce. In response, pollinator-dependent growers seek alternative pollinators. One approach is installing bee pasture on farms, a strategy that enables systems-based farmers to become in-situ farm-scale habitat managers. This thesis first presents a review of the literature on bee pasture plantings and provides a brief overview of some methods for assessing their impacts on the pollinator community. There are three major gaps in current bee pasture …

Conservation Planning In A Changing World, Austin Walker Milt

Doctoral Dissertations

As a science and practice dedicated to preventing, stopping, and reversing negative effects on nature, conservation is constantly faced with new challenges. Combine this fact with the rise of large, freely available datasets and computational power, and the result is a need to advance the methods and conceptual approach to conservation planning. In my dissertation I present novel methods and address research questions that aim to keep conservation science and practice relevant and effective in a changing world. This picture of continual change is illustrated in Chapter 1, in which I explore how the ongoing collection of observations of rare …

Evolution And Phylogeny Of The Parasitoid Subfamily Phasiinae (Diptera: Tachinidae), Jeremy Daniel Blaschke

Doctoral Dissertations

The first molecular phylogenetic analysis of the agriculturally important parasitoid subfamily Phasiinae (Diptera: Tachinidae) is presented, estimated from 128 worldwide taxa (80 genera) and approximately 7.6 kilobases of nuclear data. Special emphasis is placed on taxa with controversial taxonomic placement. The resultant phylogenetic tree is used to reconstruct ancestral character states, trace the evolution of significant adaptive traits within the Tachinidae, and test hypotheses about the classification of Phasiinae. Subfamily placements of the taxa Eutherini, Epigrimyiini, Litophasia, Strongygastrini, and Parerigonini are confidently resolved, the former three within Dexiinae and the latter two within Phasiinae. Due to sparse molecular evidence, …

Ichthyoplankton Distribution And Assemblage Within And Around The Saco River Plume, Tracey Bauer

All Theses And Dissertations

A majority of research has focused on the importance of large river plumes for ichthyoplankton survival and recruitment. However, the impacts of smaller, more ephemeral river plumes, such as those commonly found in the Gulf of Maine, on ichthyoplankton are far less understood. The purpose of the current study was to use a small river plume located in the southern Gulf of Maine as a model system to increase our understanding of their effects on ichthyoplankton distribution and diversity, and determine what biotic and abiotic factors may be influencing any differences observed. Plankton tow sampling revealed that although ichthyoplankton abundance …

Habitat Use By Spruce Grouse In A Fragmented System, Laurel A. Hill

All NMU Master's Theses

The spruce grouse is a boreal obligate species that has been protected in Michigan since 1915 (Ammann 1963). Despite protection, the status of spruce grouse is uncertain in Michigan and other parts of the Midwest, and there have been few attempts at large-scale surveys or monitoring (Williamson et al. 2008). I studied a population of spruce grouse near the southern edge of their range on the Yellow Dog Plains in Marquette County, Michigan.

I investigated fecal pellet counts as a possible method to assess spruce grouse presence and habitat use. My results validated the use of fecal pellet occurrence as …

Rock Creek Restoration Macroinvertebrate Monitoring Report, Daniel Bedell

Environmental Science and Management Professional Master's Project Reports

Stream restoration is widely used to rebuild habitat for native fisheries, but it is not well understood how current habitat reconstruction practices affect biological diversity. Citizen Science programs have potential to provide supplemental macroinvertebrate data for effectiveness monitoring of reach-scale restoration projects but variability in training, experience and collection methods can make interpretation difficult. The Clackamas Water Environment Services Watershed Health Education Program (WHEP) is an example of a Citizen Science-based program actively collecting biological data from restored streams. The purpose of this project was to use WHEP student-collected data to detect benthic macroinvertebrate community responses to stream restoration practices. …

Is Chir Pine Displacing Banj Oak In The Central Himalaya? Socioeconomic Implications For Local People And The Conservation Of Oak Forest Biodiversity, Ankush Nautiyal

Graduate Theses and Dissertations

Various studies have suggested that chir pine (Pinus roxburghii) is replacing banj oak (Quercus leucotrichophora) in the Central Himalaya. Five sites with three different types of forests (banj oak, chir pine and mixed oak-pine) were sampled to compare the diversity of their vegetation and to assess the impact of this ongoing conversion on biodiversity. Soil samples collected from oak and pine forests were analyzed and compared. In addition, dendrochronology was used to obtain age estimates of chir pine and to understand the growth response of this species to precipitation. Also, samples of ectomycorrhizal fungi were collected in the form of …

The Suitability Of Habitats And The Effects Of Human Activities In Osupuko And Olepolos Wildlife Sanctuaries On Maasai Giraffes, Sydney P. Davis

Undergraduate Honors Theses

Habitat quality and resource availability within wildlife dispersal areas in the Amboseli ecosystem are experiencing degradation due to pastoralism and agriculture by humans, which negatively affects the wildlife species that utilize these dispersal areas. Maasai giraffes are a common species that utilize these areas, but information on how human activities and the presence of domestic livestock affects the Maasai giraffe is limited. This study was conducted in two wildlife sanctuaries: Osupuko and Olepolos. Habitat condition assessment was done to determine the quality of habitats found within each sanctuary. The Point-Centered Quadrat Method was used to determine the number of five …

Local Patterns In Host-Selection By Anemone Symbionts In Bocas Del Toro, Panama, Samantha Mercer

Undergraduate Honors Theses

The associations made between many symbiotic cleaner shrimps and their host anemone species are influenced by local ecological factors, resulting in regional variations in symbiont-host preferences. These relationships are crucial parts of aquatic ecosystems, and as we face rapid global environmental change, understanding the local patterns of this host specificity will be essential to maintaining healthy marine environments. However, sea anemones, as well as their symbiotic relationships, from the Caribbean coasts of Panama have been poorly studied and are largely under-represented in the current literature. The purpose of this study is to identify the local host-selection patterns, specifically regarding host-size …

Comparing Pseudo-Environmental And Horizontal Plus Pseudo-Environmental Transmission Of A Probiotic Janithinobacterium Lividum Between Green Frog Tadpoles, Stephen Simonetti

Senior Honors Projects, 2010-2019

The gram-negative bacteria, Janthinobacterium lividum (J.liv) is able to kill the pathogenic fungus known as Batrachochytrium dendrobatidis (Bd), which is known to be causing massive amphibian decline worldwide. The purpose of this research was to identify the ability of the probiotic bacteria, Janthinobacterium lividum (J.liv), to be horizontally transmitted from individual to individual and/or pseudo-environmentally transmitted from individual to environment and back to individual between Lithobates clamitans (green frog) tadpoles. Based on previous findings I hypothesized that pseudo-environmental and horizontal transmission will occur in tadpoles. This would be important for helping stop the decline of amphibians because it would provide …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

A Systematic Review Of The Soricimorph Eulipotyphla (Soricidae: Mammalia) From The Gray Fossil Site (Hemphillian), Tennessee, Joshua Doby

Electronic Theses and Dissertations

Due in part to the incompleteness of the Cenozoic fossil record in the eastern U.S., the evolution and immigration of shrews (Soricidae) is not well understood. A rich soricid fauna from the Gray Fossil Site (GFS), Washington County, TN, has enabled many new inferences to be made. There are 7 new species in 6 genera: Paenelimnoecus, “Blarinella”, Petenyia, Tregosorex, Crusafontina, and Gen et sp. nov. GFS species of the genera Paenelimnoecus, “Blarinella”, and Petenyia are the first occurrence of each genus in the New World. Tregosorex, Crusafontina, and the N.A. taxon Limnoecus all have their latest documented occurrence at the …

Innovative Governance And Natural Resource Management In Kenya: Procedural And Substantive Outcomes Of Civil Society Participation, Jane Omudho Okwako

Dissertations

Kenya’s environmental sector is embracing co-management to address major threats to wildlife. In the past two decades, the Municipal-Community-Private Sector Partnership (MCPP) model evolved to address the threats. This dissertation seeks to explain variations in partnership outcomes. It evaluates whether the model as introduced empowers communities to be conservation stewards.

This study hypothesized the impact of five variables. These are decentralization of power, elite support, capacity of community organizations, partnership formalization, and resources expended. The findings confirm that three variables are indispensable and two minimally influence empowerment. More decentralized management structures are enabling and supportive of empowerment. However, empowerment is …

Exploration Of Spatial And Temporal Changes In Trophic Status Of Lakes In The Northern Temporal Forest Biome Using Remote Sensing, Aleksey Paltsev

Electronic Thesis and Dissertation Repository

There is a critical need for detailed surveys of lakes covering large spatial (>100 km²) and temporal scales (decades) to determine if there is an increase in the magnitude and frequency of phytoplankton blooms. Remote sensing was used to: (1) develop a regression model that relates chlorophyll a (chl-a) as a proxy of lake phytoplankton biomass to Landsat TM and ETM+ optical reflectance (r²=0.85, p

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

A Comparison Of The Genetic Diversity Of The Class Ii Major Histocompatibility Complex In Ex Situ And In Situ Populations Of African Penguins (Spheniscus Demersus), Emily Willmer

Undergraduate Honors Thesis Projects

As an endangered species, the African penguin (Spheniscus demersus) is at risk of becoming extinct in the wild due to destruction of their coastal habitat and reduction in food availability. The development of a genetically diverse and healthy captive population is important in helping to conserve the species. The goal of this project was to determine the genetic diversity of the class II major histocompatibility complex (MHC) of a wild population of African penguins and compare it to the diversity of the captive population at Mystic Aquarium in Mystic, Connecticut that has previously been studied. We found that …

Ant (Hymenoptera: Formicidae) Assemblages In Three New York Pine Barrens And The Impacts Of Hiking Trails, Grace W. Barber

Masters Theses

Ants are ecologically important, environmentally sensitive, widespread, and abundant, yet ant assemblages of many habitats remain poorly understood. Ants in inland barrens of New York State (NY) barely have been studied, but the limited data suggest such habitats are likely to support uncommon ant species and high species density for the region. To increase knowledge of these assemblages, I systematically collected ants from three inland barrens systems in NY, to create species lists and measure species density. I also investigated how hiking trails — a common man-made disturbance — may be impacting ant assemblages in these early-successional, disturbance-dependent ecosystems. My …

Investigating Seed Dispersal Distances And Long Distance Dispersal Mechanisms Of The Invasive Plant, Alliaria Petiolata, Christopher Loebach

Theses and Dissertations

Alliaria petiolata, an herbaceous plant, has aggressively invaded North American woodlands. It has been extensively studied to understand why it is a successful invader, but certain aspects of its biology have been understudied such as seed dispersal distances and long distance dispersal mechanisms (LDDM). My thesis experimentally measured A. petiolata seed dispersal distances and determined if epizoochory (external animal transport) is a LDDM. To measure dispersal distances, seed traps were placed around three A. petiolata seed point sources to capture dispersed seeds at increasing distances away from the point sources. Eight mathematical functions that describe dispersal distances were fitted to …

Identification Of Saccharina Groenlandica (Phaeophyceae) Around The Svalbard Archipelago: Dna Barcoding Using Cytochrome C Oxidase Subunit 1 (Coi), Anniken Lydon

Master's Theses

In the Arctic, brown algae (kelps) and seaweeds are ecologically important: providing habitat, protection, and nutrients for invertebrate and vertebrate species living in nearshore environments. Migrations of biota between the North Pacific and North Atlantic Oceans have occurred periodically during Earth’s history leading to colonization of the Arctic Ocean. Around 3.5 Mya the “Great Trans-Arctic Biotic Interchange” occurred and the Laminariales order of kelp, thought to be of North Pacific origin, underwent a massive radiation and speciation event around the Arctic Ocean. Phylogenetic analysis performed on “Laminaria-like” specimens collected from six sampling locations around the Svalbard Archipelago identified …

Sampling Considerations For Amphibian Surveys: Evaluating Risks Of Committing Type I And Type Ii Errors, Kelli Marie Herrick

Theses, Dissertations and Capstones

Global amphibian declines pose a major threat to the world’s biodiversity. We examined the observation bias associated with volunteer based anuran surveys, such as the North American Amphibian Monitoring Protocol (NAAMP). We followed NAAMP protocol to examine if variation in the persons (1-3) in an observer unit affected observer error. We hypothesized that observation units with multiple observers have less observer bias and would better report anuran assemblages compared to single observers. Larger observer units had fewer incidences of false positive observations. Additionally, we attempted to determine which sampling method for the eastern hellbender (Cryptobranchus a. alleganiensis) had the highest …

Examining The Impacts Of Valley Fills In Stream Ecosystems On Amphibian And Aquatic Insect Communities In Southeastern Kentucky, John Clayton Bourne

Online Theses and Dissertations

Chapter 1. Abstract: Biodiversity is not evenly distributed, and understanding factors that determine spatial patterns of species diversity remains a key question in ecology. Because of their relatively high abundance and complex life cycles, stream salamanders and aquatic insects are important trophic links and serve a critical role in transferring energy. Despite this importance little research has examined their community structure simultaneously in aquatic ecosystems. The primary objective of this research was to determine the structure of these communities across natural areas of southeastern Kentucky and understand what factors impact their abundances and distributions. To address this, we sampled eight …