Animal Sciences Commons^™

Nestedness And Modularity Of Avian Metacommunities Across Gradients Of Chesapeake Bay Island Characteristics, Grant Walter Bowers

Biological Sciences Theses & Dissertations

Islands are not only great models for understanding the ways in which communities are linked by the dispersal of their members to form metacommunities, but are of particular interest to conservationists. One important aspect of metacommunity structure is the degree of nestedness—whether or not less speciose communities are perfect subsets of more speciose communities. Another important metric of metacommunity structure is modularity—the degree to which communities belong to modules composed of other communities that share the same species but have little species overlap with communities from different modules. Environmental gradients have received insufficient attention as predictors of metacommunity nestedness and …

Beyond Zar: The Use And Abuse Of Classification Statistics For Otolith Chemistry, C. M. Jones, M. Palmers, J. J. Schaffler

OES Faculty Publications

Classification method performance was evaluated using otolith chemistry of juvenile Atlantic menhaden Brevoortia tyrannus when assumptions of data normality were met and were violated. Four methods were tested [linear discriminant function analysis (LDFA), quadratic discriminant function analysis (QDFA), random forest (RF) and artificial neural networks (ANN)] using computer simulation to determine their performance when variable-group means ranged from small to large and their performance under conditions of typical skewness to double the amount of skewness typically observed. Using the kappa index, the parametric methods performed best after applying appropriate data transformation, gaining 2% better performance with LDFA performing slightly better …

Regulatory Capture, The Chesapeake Bay, And Hampton Roads: What's On Your Plate, Ronnie David Gannon

Institute for the Humanities Theses

The Chesapeake Bay and its 64,000 square mile watershed are both severely impacted from excessive amounts of nutrient pollution, which contributes to a growing presence of dead zones in the Bay. What causes nutrient pollution? What are dead zones? In addition, many of the Bay's commercially valuable species of marine life have been/ are overexploited to the point of collapse / verge of collapse. Despite all of these facts, management agencies continue to weakly enforce regulations. Why?

Not to mention, much of the Bay's marine life is unsustainably caught in the contaminated waters of Hampton Roads. How, and for what? …

How Do Shellfisheries Influence Genetic Connectivity In Metapopulations? A Modeling Study Examining The Role Of Lower Size Limits In Oyster Fisheries, Daphne M. Munroe, Eileen E. Hofmann, Eric N. Powell, John M. Klinck

CCPO Publications

Fisheries can potentially alter evolutionary processes such as genetic connectivity and lead to genotypic changes in stocks. Using an individual-based metapopulation genetics model, we examined the possible influence of oyster (Crassostrea virginica) fisheries on genetic connectivity. We simulated a range of realistic fishing pressures, with and without a minimum size limit (limit = 63.5 mm), over a range of fishing scenarios including single-area and stock-wide fisheries. Movement of a neutral marker gene provided an indicator of gene transfer between populations. Simulations showed that fishing may alter genetic connectivity. Increasing fishing pressure tended to decrease potential for fished populations …

Population Dynamics Of Sheepshead (Archosargus Probatocephalus; Walbaum 1792) In The Chesapeake Bay Region: A Comparison To Other Areas And An Assessment Of Their Current Status, Joseph Charles Ballenger

OES Theses and Dissertations

Sheepshead recently have seen an increase in fishing pressure in Virginian waters of the Chesapeake Bay. This increase in fishing pressure has led to demands to install effective management measures to protect the fishery. However, no study regarding the population dynamics, and thus potential yield, of sheepshead has been conducted north of Cape Hatteras. We addressed the need for information regarding the population dynamics of Chesapeake Bay sheepshead by investigating their age distribution, growth rate and reproductive biology. We used this information to construct yield-per-recruit models, which local management agencies may use in the formation of scientifically based management measures. …

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …

Characterization Of Photochromogenic Mycobacterium Spp. From Chesapeake Bay Striped Bass Morone Saxatilis, D. T. Gauthier, A. M. Helenthal, M. W. Rhodes, W. K. Vogelbein, H. I. Kator

Biological Sciences Faculty Publications

A large diversity of Mycobacterium spp. has been isolated from striped bass Morone saxatilis in Chesapeake Bay, USA. The new species M. shottsii and M. pseudoshottsii are the dominant isolates, while the classical fish pathogen M. marinum is found much less frequently. M. fortuitum and M. chelonae, other Mycobacterium spp. known to commonly infect fishes, have not yet been aseptically isolated from striped bass within Chesapeake Bay. While M. pseudoshottsii and M. shottsii have been phenotypically and genotypically characterized, other less common mycobacterial isolates have not. In the present study, we describe 17 photochromogenic isolates from Chesapeake …

Quantitative Pcr Assay For Mycobacterium Pseudoshottsii And Mycobacterium Shottsii And Application To Environmental Samples And Fishes From The Chesapeake Bay, D. T. Gauthier, K. S. Reece, J. Xiao, M. W. Rhodes, H. I. Kator, R. J. Latour, C. F. Bonzek, J. M. Hoenig, W. K. Vogelbein

Biological Sciences Faculty Publications

Striped bass (Morone saxatilis) in the Chesapeake Bay are currently experiencing a very high prevalence of mycobacteriosis associated with newly described Mycobacterium species, Mycobacterium pseudoshottsii and M. shottsii. The ecology of these mycobacteria outside the striped bass host is currently unknown. In this work, we developed quantitative real-time PCR assays for M. pseudoshottsii and M. shottsii and applied these assays to DNA extracts from Chesapeake Bay water and sediment samples, as well as to tissues from two dominant prey of striped bass, Atlantic menhaden (Brevoortia tyrannus) and bay anchovy (Anchoa mitchilli). Mycobacterium …

First Records Of Hypleurochilus Geminatus And Centropristis Philadelphica From Chesapeake Bay, Aimee D. Halvorson

Virginia Journal of Science

During the fall of 2007, Centropris philadelphica (rock seabass) and Hypleurochilus geminatus (Crested blenny) were collected from Chesapeake Bay. These captures are significant as they represent the first substantiated record of C. philadelphica from Chesapeake Bay and only the second and third validated records of H. geminatus. Additionally, the first record of H. geminatus from Chesapeake Bay was only recently recognized since the specimen had been previously misidentified as Parablennius marmoreus (seaweed blenny). The collection of seven individuals of H. geminatus in 2007, from two locations, indicates that the species may be resident within the Chesapeake Bay estuary.

Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

We compared ingress patterns of Atlantic croaker Micropogonias undulatus larvae into Chesapeake Bay, USA, with published ingress patterns through barrier island inlets, the accepted model for larval fish ingress. This model asserts that larvae ingress on night flood tides at the flooddominated side of the inlet and at all depths. At the Chesapeake Bay mouth and in the adjacent coastal waters, we compared the distribution of abundance, size, age, and growth rates of croaker prior to ingress, In contrast to the barrier island inlet model, croaker larvae were more abundant at depth than closer to the surface regardless of location. …

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones

OES Faculty Publications

We tested the hypothesis that the physical and chemical processes acting in sea grass habitats of the lower Chesapeake Bay are spatially structured and that dissolved elemental chemistry of sea grass-habitat surface waters have their own unique identity. We sampled surface waters from July to September 2001 in five sea grass habitats of the lower bay: Potomac, Rappahannock, York, Island (Tangier-Bloodsworth), and Eastern Shore. Dissolved Mg, Mn, Sr, and Ba concentrations were measured by sector field inductively coupled plasma-mass spectrometry. As expected, Mg, Sr, and Ba exhibited conservative behavior, but Mn exhibited nonconservative behavior along the salinity gradient. Spatial differences …

Biophysical Mechanisms Of Larval Fish Ingress Into Chesapeake Bay, Jonathan A. Hare, Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, Cynthia Jones

OES Faculty Publications

Selective tidal stream transport is hypothesized as a dominant mechanism by which larvae of marine animals move through estuarine openings. For larvae moving from the shelf to estuarine habitats, selective tidal stream transport proposes that larvae are higher in the water column during flood tide and lower in the water column during ebb tide. Although a number of studies conclude that selective tidal stream transport is the mechanism responsible for larval ingress, few studies consider alternative mechanisms or consider passive explanations for tidal patterns in larval distributions. We examined the biophysical mechanisms responsible for larval ingress into Chesapeake Bay using …

Reproduction Of Black Drum, Pogonias Cromis, From The Chesapeake Bay Region, Brian K. Wells, Cynthia M. Jones

Virginia Journal of Science

Ovaries of black drum, Pogonias cromis, collected from the Chesapeake Bay region in 1992, were used to describe reproductive strategy and fecundity. Histological examination showed that black drum spawn in the Chesapeake Bay region from April through early June. Distributions of oocyte diameter showed distinct oocyte-developmental groups indicating that Chesapeake Bay black drum are group-synchronous batch spawners. Female black drum are extremely fecund ranging from 414,000 to 3,736,000 hydrated oocytes (mean = 1,389,000) per batch with a spawning periodicity of 3.8 days. Estimates of spawning strategy, spawning periodicity, and batch fecundity for black drum from the Chesapeake Bay region …

Vertical Distributions Of Zooplankton At The Mouth Of Chesapeake Bay And Calibration Of Backscatter From An Acoustic Doppler Current Profiler, Arthur Keith Jenkins

Biological Sciences Theses & Dissertations

This study investigated the physical factors influencing the vertical distribution of zooplankton at the mouth of the Chesapeake Bay and attempted to derive biological data from acoustic Doppler current profiler (ADCP) backscatter. A single site was occupied in the North Channel at the mouth of Chesapeake Bay (37° 04' N, 75° 58' W) from 17.0–19.7 November 1999. Temperature, salinity, fluorescence, light transmission, current velocity and backscatter were measured throughout the sampling period. Plankton samples were collected every hour from 3.5, 7.5, and 11.5 m.

We found little association between ADCP backscatter and plankton concentrations, but stronger correlations between backscatter and …

Growth Rate Variability And Lipofuscin Accumulation Rates In The Blue Crab Callinectes Sapidus, Se-Jong Ju, David H. Secor, H. Rodger Harvey

OES Faculty Publications

To better understand growth and age-pigment (lipofuscin) accumulation rates of the blue crab Callinectes sapidus under natural conditions, juveniles (33 to 94 mm carapace width) were reared in outdoor ponds for over 1 yr. Growth rates, measured by carapace width, during summer and fall exceeded all those reported in the literature; the initial carapace width of 59 ± 14 mm (mean ± SD) increased to 164 ± 15 mm within a 3 mo period. No growth occurred during winter months (November to April) at low water temperatures. Growth rates of crabs in ponds were substantially higher (von Bertalanffy growth parameter …

Growth And Yield-Per-Recruit Modeling Of Spot (Leiostomus Xanthurus) In The Chesapeake Bay, And A Comparison Of Biological Reference Points, Kevin Ray Piner

Biological Sciences Theses & Dissertations

Spot were sampled from the Chesapeake Bay commercial fishery from 1993–1995 to determine if spot are overfished. Transversely sectioned otoliths were determined to be the most appropriate structure for ageing spot. It was determined that spot have a high natural mortality rate (M = 0.9) and fast growth (K = 0.6). This combination of M and K makes spot relatively impervious to growth overfishing as determined by yield-per-recruit modeling. Because spot are nearly impervious to growth overfishing, management thresholds based on yield-per-recruit modeling may be inappropriate. In addition, the combination of high M and fast K makes it possible to …

Distribution Of Free Marine Viruses Of Lower Chesapeake Bay And Their Effects On Life-History Parameters Of The Estuarine Copepod Acartia Tonsa Dana, Lisa A. Drake

OES Theses and Dissertations

Naturally occurring viruses are very abundant in fresh, estuarine, and marine waters, with densities on the order of 10⁵-10⁸ viruses ml^-1. Research has focused on virus effects on bacteria, cyanobacteria, and phytoplankton, as well as mechanisms of virus production and decay. However, little is known about the distribution of viruses in benthic environments or virus effects on organisms in higher trophic levels.

To determine the distribution of virus-like particles (VLPs) and bacteria in the lower Chesapeake Bay, vertical profiles of VLPs and bacteria were determined through the water column and 15-25 cm into the sediment …

Description, Distribution, And Abundance Of The Blue Crab, Callinectes Sapidus (Rathbun), Spawning Stock Of The Lower Chesapeake Bay, Patrick John Geer

OES Theses and Dissertations

The lower Chesapeake Bay spawning stock of the blue crab, Callinectes sapidus, (Rathbun), is examined for seven years (1986 - 1992) in an attempt to better understand stock behavior. Three methods of post-stratification are used to describe the distribution and movement of the population over time. The three methods, density strata, geographic zones, and depth strata, did well in explaining movements of the population, indicating a trend of increased concentration of blue crabs near the eastern Bay late in the spawning season - October. The data suggest a bimodal period of spawning and a trimodal period of abundance. The …

Age, Growth, And Mortality Of Atlantic Croaker, Micropogonias Undulatus, In The Chesapeake Bay Region, With A Discussion Of Apparent Geographic Changes In Population Dynamics, Luiz R. Barbieri, Mark E. Chittenden Jr., Cynthia M. Jones

OES Faculty Publications

Atlantic croaker, Micropogonias undulatus, collected from commercial catches in Chesapeake Bay and in Virginia and North Carolina coastal waters during 1988-1991 (n=1,967) were aged from transverse otolith sections. Ages 1-8 were recorded, but eight-year-old fish were rare. Marginal increment analysis showed that for ages 1-7, annuli are formed once a year during the period April-May. Otolith age readings were precise: >99% agreement within and between readers. Observed lengths-at-age were highly variable and growth rate decreased after the first year. Despite the high variability in sizes-at-age, observed lengths for ages 1-7 fit the von Bertalanffy growth model (r2=0.99; n=753) well. …

Spatial And Temporal Occurrence Of Spanish Mackerel Scomberomorus Maculatus In Chesapeake Bay, Mark E. Chittenden Jr., Luiz R. Barbieri, Cynthia M. Jones

OES Faculty Publications

No abstract provided.

Age Growth And Reproduction Of Black Drum, Pogonias Cromis, In Virginia, Stephen J. Bobko

Biological Sciences Theses & Dissertations

The black drum, Pogonias cromis, is of great economic importance to the communities of the lower Eastern Shore of Virginia. Fish are sought both commercially and recreationally during their yearly spring spawning run. Although the number of fish caught each year does not rival other exploited species, it is a directed fishery that partially supports many local fishermen, seafood distributors, marinas, motel owners, and restauranteurs.

Black drum were collected during the fall of 1989 and the spring of 1990 to investigate the population dynamics of fish found in Virginia's Chesapeake Bay and surrounding coastal waters. A total of 235 fish …

Estimates Of Spawning Stock Size Of Blue Crab, Callinectes Sapidus, In Chesapeake Bay, 1986-1987, Cynthia M. Jones, John R. Mcconaugha, Patrick J. Geer, Michael H. Prager

OES Faculty Publications

The 1986 spawning stock exhibited a single abundance peak, increasing from 1.0×105 individuals in early July to 9.3×106 in late July, maintaining high levels throughout the summer, and declining in the fall to 7.4×105 individuals. The 1987 spawning stock showed 2 peaks of abundance. The population reached the lesser peak, 1.0×106 individuals, in late July; the greater peak, 1.5×106, in late August. By late September, the population had declined to 6.5×105 individuals. The peak abundance of the 1987 female spawning stock was only 16% as great as the peak abundance in 1986; the 1987 spawning stock size in 1986. Variability …

Fecundity Of Blue Crab, Callinectes Sapidus, In Chesapeake Bay: Biological, Statistical And Management Considerations, Michael H. Prager, John R. Mcconaugha, Cynthia M. Jones, Patrick J. Geer

OES Faculty Publications

Ovigerous blue crabs were collected from the mouth of Chesapeake Bay during the 1986 and 1987 spawning seasons. Mean carapace width was 14.7 cm; mean fecundity was 3.2×106 eggs. Fecundity was significantly related to carapace width, and did not vary significantly with developmental stage of the eggs. Mean fecundities were 2.6×106 eggs in 1986, and 4.0×106 eggs in 1987. An additive model with year and size effects described the observed fecundities reasonably well, was compact, and was easier to interpret than a multiplicative model. To fit a more general model without year effects, the authors took the mean of 1986 …

The Temporal And Spatial Distribution Of Blue Crab Larvae On The Mid-Atlantic Bight Adjacent To The Chesapeake Bay, 1982-1983, Lyle Michael Varnell

OES Theses and Dissertations

Recruitment processes are important information for the management of commercially and recreationally exploited marine species. Recruitment processes of the Chesapeake Bay's most important commercial and recreational species, the blue crab, are unknown, due in part to the lack of knowledge of the processes directly preceeding recruitment.

The present study was undertaken to investigate and explain the movement and developmental patterns of blue crab larvae while offshore. Interannual and intraseasonal variations of these patterns were also examined.

Sampling occurred from May to November during 1982 and 1983. Larvae were collected at three depths (neuston layer (upper 10 cm), one meter and …

Age And Growth Of The Tautog, Tautoga Onitis (Pisces: Labridae), From Lower Chesapeake Bay And Coastal Waters Of Virginia, E. Brian Hostetter

Biological Sciences Theses & Dissertations

The tautog, Tautoga onitis (Pisces: Labridae), is rapidly gaining popularity in Virginia by anglers, spearfishermen and specialized commercial interests. In Virginia, tautog are seasonally abundant on hard bottom substrates in nearshore (ca. 2-10 m) habitats and inhabit offshore wrecks and reef areas (ca. 10-30 m) year round. Habitat restriction and slow growth of the species coupled with recent technological advances in marine electronics which simplify locating tautog populations by user groups may contribute to overexploitation of tautog within the region.

Tautog were collected over a two year period from the lower Chesapeake Bay and nearshore waters of the Atlantic Ocean …

Timing Of The Blue Crab Fisheries Of Virginia And Its Application To Harvest Management, J. Dale Shively

OES Theses and Dissertations

The timing of a fishery is a quantitative expression of the composite behaviors of harvesters, markets, animals and climatic events. A quantitative description of the timing of the blue crab (Callinectes sapidus) fisheries of Virginia was established using the time density model of Mundy (1979). Blue crab catch statistics supplied by the National Marine Fisheries Service and the Virginia Marine Resource Commission were divided into two fisheries based on gear type; the summer and winter fisheries. Average performance curves were then constructed using average cumulative proportions of catch. Annual yield estimates were also made and timing in five …

A Model Of The Population Dynamics Of The Blue Crab In Chesapeake Bay, Betty Springer Hester

OES Theses and Dissertations

This study has particular application to the blue crab fisheries in Chesapeake Bay, an economically important industry whose successful management has been hindered by relatively poor understanding of the population dynamics. Recent biological studies have indicated a systematic spawning behavior which seems designed for ejection of larvae seaward from the bay entrance where they spend their pre-metamorphosis stages in the neuston. A physical mechanism for retention of the larvae in sufficient proximity to the bay entrance for their return at the proper time which involves the action of wind stress in shallow waters is proposed. Since the supply of blue …